Strain Fitness in Sphingobium sp. HT1-2 around GFF2952

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,017,069	+		GFF2950	0.49	-1.2
3,017,090	-		GFF2950	0.51	+0.6
3,017,108	+		GFF2950	0.53	+0.6
3,017,114	+		GFF2950	0.53	+0.1
3,017,128	-		GFF2950	0.54	-1.7
3,017,128	-		GFF2950	0.54	-1.5
3,017,154	+		GFF2950	0.57	-0.6
3,017,154	+		GFF2950	0.57	+0.4
3,017,154	+		GFF2950	0.57	+0.3
3,017,182	-		GFF2950	0.59	+0.8
3,017,185	+		GFF2950	0.60	+0.5
3,017,198	+		GFF2950	0.61	-1.0
3,017,198	-		GFF2950	0.61	-0.8
3,017,203	+		GFF2950	0.61	+1.0
3,017,205	+		GFF2950	0.61	+1.1
3,017,205	-		GFF2950	0.61	-0.9
3,017,213	-		GFF2950	0.62	+0.2
3,017,235	+		GFF2950	0.64	-1.0
3,017,237	-		GFF2950	0.64	+1.0
3,017,243	-		GFF2950	0.65	-0.7
3,017,254	+		GFF2950	0.66	+0.1
3,017,254	+		GFF2950	0.66	-1.1
3,017,254	+		GFF2950	0.66	+0.8
3,017,280	-		GFF2950	0.68	-0.2
3,017,292	+		GFF2950	0.70	-1.9
3,017,292	+		GFF2950	0.70	+1.2
3,017,292	+		GFF2950	0.70	+0.2
3,017,292	+		GFF2950	0.70	-0.9
3,017,292	+		GFF2950	0.70	+0.6
3,017,292	+		GFF2950	0.70	-0.3
3,017,292	+		GFF2950	0.70	-0.8
3,017,292	+		GFF2950	0.70	-0.6
3,017,292	+		GFF2950	0.70	+2.2
3,017,292	+		GFF2950	0.70	-1.6
3,017,292	+		GFF2950	0.70	+0.4
3,017,292	+		GFF2950	0.70	+0.8
3,017,292	+		GFF2950	0.70	-2.0
3,017,292	+		GFF2950	0.70	-2.3
3,017,292	+		GFF2950	0.70	-2.8
3,017,292	+		GFF2950	0.70	-0.3
3,017,292	+		GFF2950	0.70	-2.1
3,017,292	+		GFF2950	0.70	-1.6
3,017,300	-		GFF2950	0.70	-1.2
3,017,300	-		GFF2950	0.70	-0.1
3,017,300	-		GFF2950	0.70	-1.9
3,017,300	-		GFF2950	0.70	+0.1
3,017,300	-		GFF2950	0.70	+0.7
3,017,300	-		GFF2950	0.70	+1.5
3,017,300	-		GFF2950	0.70	+0.2
3,017,300	-		GFF2950	0.70	-0.5
3,017,300	-		GFF2950	0.70	-1.4
3,017,300	-		GFF2950	0.70	-1.8
3,017,300	-		GFF2950	0.70	-0.6
3,017,300	-		GFF2950	0.70	-2.3
3,017,300	-		GFF2950	0.70	+0.1
3,017,300	-		GFF2950	0.70	-0.7
3,017,300	-		GFF2950	0.70	+0.2
3,017,300	-		GFF2950	0.70	+0.7
3,017,300	-		GFF2950	0.70	-0.3
3,017,300	-		GFF2950	0.70	-0.4
3,017,300	-		GFF2950	0.70	-0.5
3,017,300	-		GFF2950	0.70	-0.6
3,017,300	-		GFF2950	0.70	+0.7
3,017,300	-		GFF2950	0.70	+0.5
3,017,300	-		GFF2950	0.70	+0.3
3,017,302	+		GFF2950	0.70	-0.3
3,017,302	+		GFF2950	0.70	+0.4
3,017,302	+		GFF2950	0.70	+0.9
3,017,302	+		GFF2950	0.70	-0.4
3,017,310	-		GFF2950	0.71	-1.6
3,017,310	-		GFF2950	0.71	-0.1
3,017,310	-		GFF2950	0.71	-0.2
3,017,310	-		GFF2950	0.71	-1.1
3,017,319	+		GFF2950	0.72	-1.0
3,017,369	+		GFF2950	0.77	+0.8
3,017,369	+		GFF2950	0.77	-1.4
3,017,391	+		GFF2950	0.79	-0.2
3,017,403	-		GFF2950	0.80	-1.3
3,017,438	+		GFF2950	0.83	-1.3
3,017,438	+		GFF2950	0.83	+0.4
3,017,438	+		GFF2950	0.83	+1.0
3,017,444	-		GFF2950	0.84	+0.7
3,017,446	-		GFF2950	0.84	+0.9
3,017,471	-		GFF2950	0.86	+0.4
3,017,482	-		GFF2950	0.87	+0.1
3,017,497	+		GFF2950	0.89	-0.3
3,017,505	-		GFF2950	0.89	+1.9
3,017,505	-		GFF2950	0.89	-2.3
3,017,543	-				+0.6
3,017,576	+				+0.2
3,017,584	-				-1.4
3,017,598	+				-0.0
3,017,598	+				+0.3
3,017,598	+				+1.0
3,017,598	+				-0.6
3,017,598	+				-0.1
3,017,598	+				+0.2
3,017,598	+				-0.6
3,017,603	+				+0.3
3,017,603	+				-2.3
3,017,606	-				-0.6
3,017,606	-				-1.0
3,017,606	-				+0.3
3,017,615	+				+0.6
3,017,615	+				-2.6
3,017,615	+				+1.5
3,017,615	+				-1.6
3,017,616	+				-0.7
3,017,621	+				-0.5
3,017,621	+				-1.7
3,017,621	+				+0.5
3,017,622	+				+0.2
3,017,623	+				-1.9
3,017,623	+				+0.8
3,017,624	-				-0.6
3,017,624	-				-0.6
3,017,630	-				-0.3
3,017,630	-				+0.4
3,017,630	-				+0.3
3,017,630	-				+1.1
3,017,651	+				-0.1
3,017,656	+				+0.4
3,017,663	+		GFF2951	0.11	+0.2
3,017,669	-		GFF2951	0.13	-1.2
3,017,669	-		GFF2951	0.13	-0.1
3,017,677	+		GFF2951	0.15	+0.6
3,017,692	+		GFF2951	0.19	-1.4
3,017,692	+		GFF2951	0.19	-0.6
3,017,693	+		GFF2951	0.20	-0.1
3,017,693	+		GFF2951	0.20	-1.3
3,017,693	+		GFF2951	0.20	+0.9
3,017,693	+		GFF2951	0.20	+0.6
3,017,693	+		GFF2951	0.20	-1.8
3,017,693	+		GFF2951	0.20	-0.8
3,017,693	+		GFF2951	0.20	-1.8
3,017,693	+		GFF2951	0.20	+0.1
3,017,701	-		GFF2951	0.22	-0.4
3,017,701	-		GFF2951	0.22	+1.2
3,017,701	-		GFF2951	0.22	-1.4
3,017,701	-		GFF2951	0.22	-1.1
3,017,701	-		GFF2951	0.22	-2.1
3,017,701	-		GFF2951	0.22	-0.2
3,017,701	-		GFF2951	0.22	-1.6
3,017,712	+		GFF2951	0.25	-0.4
3,017,712	+		GFF2951	0.25	+0.4
3,017,712	+		GFF2951	0.25	-2.2
3,017,720	-		GFF2951	0.27	-2.9
3,017,720	-		GFF2951	0.27	+1.4
3,017,735	-		GFF2951	0.32	-1.8
3,017,762	+		GFF2951	0.39	-0.5
3,017,762	+		GFF2951	0.39	+0.0
3,017,770	-		GFF2951	0.42	+0.3
3,017,770	-		GFF2951	0.42	-0.6
3,017,770	-		GFF2951	0.42	-2.2
3,017,779	+		GFF2951	0.44	-1.5
3,017,797	-		GFF2951	0.49	+0.1
3,017,836	+		GFF2951	0.60	-1.2
3,017,836	+		GFF2951	0.60	-1.4
3,017,844	-		GFF2951	0.63	-0.5
3,017,844	-		GFF2951	0.63	-1.7
3,017,844	-		GFF2951	0.63	-1.1
3,017,871	+		GFF2951	0.70	-1.2
3,017,879	-		GFF2951	0.73	-0.7
3,017,879	-		GFF2951	0.73	+1.1
3,017,912	-		GFF2951	0.82	+0.4
3,017,914	+		GFF2951	0.83	-1.3
3,017,921	+		GFF2951	0.85	+0.9
3,017,923	+		GFF2951	0.85	+0.6
3,017,923	+		GFF2951	0.85	-1.6
3,017,937	+		GFF2951	0.89	-0.1
3,018,444	+				-1.9
3,018,447	-				+0.0
3,018,447	-				+0.6
3,018,465	+				+0.4
3,018,485	-				-1.2
3,018,485	-				+0.3
3,018,504	+				+0.4
3,018,591	+				+2.5
3,018,622	+				-0.3
3,018,658	-		GFF2953	0.10	-1.4
3,018,660	+		GFF2953	0.11	-0.1
3,018,670	+		GFF2953	0.13	-1.6
3,018,678	-		GFF2953	0.15	+0.1
3,018,678	-		GFF2953	0.15	-1.3
3,018,683	+		GFF2953	0.16	+0.3
3,018,683	+		GFF2953	0.16	+0.5
3,018,691	-		GFF2953	0.17	+0.7
3,018,691	-		GFF2953	0.17	-0.5
3,018,693	+		GFF2953	0.18	+0.1
3,018,701	-		GFF2953	0.20	+0.6
3,018,722	-		GFF2953	0.24	+0.7
3,018,729	+		GFF2953	0.26	-1.6
3,018,729	+		GFF2953	0.26	-1.9
3,018,729	+		GFF2953	0.26	-0.2
3,018,736	-		GFF2953	0.27	-2.2
3,018,737	-		GFF2953	0.27	-0.8
3,018,737	-		GFF2953	0.27	-0.5
3,018,755	+		GFF2953	0.31	-1.2
3,018,763	-		GFF2953	0.33	-2.3
3,018,784	-		GFF2953	0.38	-1.1
3,018,788	+		GFF2953	0.39	+0.3
3,018,789	-		GFF2953	0.39	-1.0
3,018,800	+		GFF2953	0.41	-0.4
3,018,817	+		GFF2953	0.45	-1.1
3,018,817	+		GFF2953	0.45	-1.6
3,018,817	+		GFF2953	0.45	-1.8
3,018,817	+		GFF2953	0.45	-0.4
3,018,825	-		GFF2953	0.47	+0.3
3,018,825	-		GFF2953	0.47	-1.2
3,018,825	-		GFF2953	0.47	-0.0
3,018,826	-		GFF2953	0.47	+1.3
3,018,828	+		GFF2953	0.47	-0.4
3,018,828	+		GFF2953	0.47	-1.7
3,018,828	+		GFF2953	0.47	-0.3
3,018,828	+		GFF2953	0.47	+0.2
3,018,828	+		GFF2953	0.47	-1.6
3,018,828	+		GFF2953	0.47	+0.8
3,018,836	-		GFF2953	0.49	-0.2
3,018,836	-		GFF2953	0.49	+0.8
3,018,836	-		GFF2953	0.49	-0.3
3,018,850	+		GFF2953	0.52	+0.1
3,018,852	+		GFF2953	0.53	+1.3
3,018,852	+		GFF2953	0.53	-1.5
3,018,860	-		GFF2953	0.54	-0.8
3,018,860	-		GFF2953	0.54	-1.9
3,018,871	+		GFF2953	0.57	-1.4
3,018,876	+		GFF2953	0.58	+0.3
3,018,897	+		GFF2953	0.62	-1.4
3,018,897	+		GFF2953	0.62	+0.4
3,018,914	+		GFF2953	0.66	-2.2
3,018,914	+		GFF2953	0.66	-1.4
3,018,922	-		GFF2953	0.68	-0.8
3,018,922	-		GFF2953	0.68	-0.1
3,018,924	+		GFF2953	0.68	-1.2
3,018,935	+		GFF2953	0.71	-0.7
3,018,935	+		GFF2953	0.71	-0.8
3,018,939	-		GFF2953	0.71	+0.1
3,018,973	+		GFF2953	0.79	-0.1
3,018,978	+		GFF2953	0.80	-1.5
3,018,981	-		GFF2953	0.81	-0.1
3,018,981	-		GFF2953	0.81	-0.9
3,018,981	-		GFF2953	0.81	-1.0
3,019,036	-				+0.5
3,019,049	-				-0.4
3,019,085	+				-1.0
3,019,107	+				+1.0
3,019,115	-				-0.8
3,019,117	-				+0.1
3,019,145	-				+0.3
3,019,154	+				+1.3
3,019,154	+				-0.7
3,019,154	+				-0.1
3,019,162	-				-1.5
3,019,162	-				+0.2
3,019,162	-				-0.1
3,019,162	-				+1.4
3,019,173	-				+0.8
3,019,177	+				-1.2
3,019,177	+				+0.6
3,019,182	+		GFF2954	0.13	+0.1
3,019,182	+		GFF2954	0.13	+0.1
3,019,182	+		GFF2954	0.13	+0.5
3,019,182	+		GFF2954	0.13	-1.2
3,019,182	+		GFF2954	0.13	-0.3
3,019,182	+		GFF2954	0.13	+0.1
3,019,182	+		GFF2954	0.13	+0.4
3,019,182	+		GFF2954	0.13	-0.7
3,019,185	-		GFF2954	0.16	+0.1
3,019,185	-		GFF2954	0.16	-1.0
3,019,190	-		GFF2954	0.20	-0.2
3,019,190	-		GFF2954	0.20	-0.2
3,019,190	-		GFF2954	0.20	-0.1
3,019,190	-		GFF2954	0.20	-1.4
3,019,190	-		GFF2954	0.20	-1.6
3,019,204	+		GFF2954	0.32	-1.5
3,019,204	+		GFF2954	0.32	-1.1
3,019,212	-		GFF2954	0.38	+0.4
3,019,212	-		GFF2954	0.38	-0.8
3,019,212	-		GFF2954	0.38	-0.2
3,019,212	-		GFF2954	0.38	-1.2
3,019,212	-		GFF2954	0.38	-1.4
3,019,212	-		GFF2954	0.38	-0.5
3,019,215	-		GFF2954	0.41	+0.1
3,019,229	+		GFF2954	0.53	-1.2
3,019,229	+		GFF2954	0.53	-2.1
3,019,232	-		GFF2954	0.55	-1.0
3,019,234	+		GFF2954	0.57	-1.8
3,019,234	+		GFF2954	0.57	-0.1
3,019,234	+		GFF2954	0.57	+1.4
3,019,242	+		GFF2954	0.63	-0.2
3,019,242	-		GFF2954	0.63	-0.2
3,019,247	-		GFF2954	0.68	-1.1
3,019,257	+		GFF2954	0.76	-0.6
3,019,257	+		GFF2954	0.76	-0.7
3,019,257	+		GFF2954	0.76	+1.0
3,019,257	+		GFF2954	0.76	-2.4
3,019,265	-		GFF2954	0.82	-1.0
3,019,265	-		GFF2954	0.82	-0.5
3,019,265	-		GFF2954	0.82	-1.0
3,019,265	-		GFF2954	0.82	+0.7
3,019,265	-		GFF2954	0.82	+0.7
3,019,270	-		GFF2954	0.87	+0.1
3,019,270	-		GFF2954	0.87	+0.1
3,019,270	-		GFF2954	0.87	-0.9
3,019,272	+		GFF2954	0.88	-0.4
3,019,272	+		GFF2954	0.88	+1.2
3,019,275	-				+1.1
3,019,275	-				-0.1
3,019,275	-				+0.4
3,019,275	-				-0.1
3,019,280	-				+0.7
3,019,280	-				-0.7
3,019,295	+				-0.7
3,019,295	+				-1.9
3,019,303	-				+0.1
3,019,310	+		GFF2955	0.11	+0.5
3,019,310	+		GFF2955	0.11	-1.8
3,019,310	+		GFF2955	0.11	-0.1
3,019,314	+		GFF2955	0.13	+0.2
3,019,314	+		GFF2955	0.13	-0.0
3,019,314	+		GFF2955	0.13	+1.6
3,019,314	+		GFF2955	0.13	+0.2
3,019,314	+		GFF2955	0.13	-0.2
3,019,314	+		GFF2955	0.13	-0.2
3,019,314	+		GFF2955	0.13	+1.3
3,019,318	-		GFF2955	0.14	-1.4
3,019,318	-		GFF2955	0.14	-1.9
3,019,318	-		GFF2955	0.14	+1.1
3,019,329	+		GFF2955	0.18	+1.1
3,019,348	+		GFF2955	0.26	-0.2
3,019,355	-		GFF2955	0.29	-0.9
3,019,355	-		GFF2955	0.29	-1.3
3,019,366	+		GFF2955	0.33	+0.8
3,019,375	+		GFF2955	0.36	-0.7
3,019,375	+		GFF2955	0.36	+0.6
3,019,375	+		GFF2955	0.36	-1.7
3,019,380	+		GFF2955	0.38	-0.8
3,019,388	-		GFF2955	0.42	+0.5
3,019,388	-		GFF2955	0.42	-0.4
3,019,426	+		GFF2955	0.56	-0.5
3,019,434	-		GFF2955	0.60	-0.1
3,019,436	+		GFF2955	0.60	-0.8
3,019,438	+		GFF2955	0.61	-1.1