Strain Fitness in Sphingobium sp. HT1-2 around GFF2949

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,014,770	+		GFF2948	0.50	-2.2
3,014,770	+		GFF2948	0.50	-0.3
3,014,778	-		GFF2948	0.51	-0.7
3,014,778	-		GFF2948	0.51	+1.2
3,014,821	+		GFF2948	0.53	-0.8
3,014,838	-		GFF2948	0.54	-1.1
3,014,845	+		GFF2948	0.54	-0.7
3,014,851	+		GFF2948	0.54	-1.0
3,014,859	-		GFF2948	0.55	-1.3
3,014,859	-		GFF2948	0.55	+0.7
3,014,892	+		GFF2948	0.56	-0.2
3,014,892	+		GFF2948	0.56	+0.2
3,014,900	-		GFF2948	0.57	-0.4
3,014,900	-		GFF2948	0.57	+1.0
3,014,929	-		GFF2948	0.58	-1.3
3,014,931	+		GFF2948	0.58	-1.5
3,014,936	+		GFF2948	0.59	+0.5
3,014,947	+		GFF2948	0.59	+0.9
3,014,952	+		GFF2948	0.59	+1.1
3,014,978	+		GFF2948	0.61	-0.3
3,014,978	+		GFF2948	0.61	-2.0
3,014,978	+		GFF2948	0.61	+0.8
3,014,978	+		GFF2948	0.61	-1.4
3,014,978	+		GFF2948	0.61	+0.3
3,014,983	+		GFF2948	0.61	-0.2
3,014,983	+		GFF2948	0.61	-2.6
3,014,983	+		GFF2948	0.61	+0.3
3,014,986	-		GFF2948	0.61	-3.2
3,014,986	-		GFF2948	0.61	-0.3
3,014,986	-		GFF2948	0.61	-0.5
3,014,986	-		GFF2948	0.61	+1.2
3,014,986	-		GFF2948	0.61	+0.2
3,014,991	-		GFF2948	0.61	+0.0
3,014,993	+		GFF2948	0.62	-1.4
3,015,008	+		GFF2948	0.62	-2.6
3,015,013	+		GFF2948	0.63	-1.2
3,015,018	+		GFF2948	0.63	-0.5
3,015,021	-		GFF2948	0.63	-0.2
3,015,026	-		GFF2948	0.63	-0.5
3,015,040	+		GFF2948	0.64	-1.6
3,015,053	+		GFF2948	0.65	-1.0
3,015,053	+		GFF2948	0.65	+0.2
3,015,073	+		GFF2948	0.66	-0.1
3,015,073	+		GFF2948	0.66	-0.8
3,015,081	-		GFF2948	0.66	-1.0
3,015,095	-		GFF2948	0.67	-3.4
3,015,100	+		GFF2948	0.67	-1.9
3,015,112	-		GFF2948	0.68	+0.3
3,015,132	+		GFF2948	0.69	+0.4
3,015,153	+		GFF2948	0.70	+2.2
3,015,153	-		GFF2948	0.70	-0.0
3,015,153	-		GFF2948	0.70	+0.3
3,015,156	+		GFF2948	0.70	-0.1
3,015,168	+		GFF2948	0.71	-0.7
3,015,174	+		GFF2948	0.71	+0.2
3,015,176	-		GFF2948	0.71	-0.7
3,015,176	-		GFF2948	0.71	-0.0
3,015,196	+		GFF2948	0.72	-1.5
3,015,196	+		GFF2948	0.72	-0.9
3,015,196	+		GFF2948	0.72	-1.9
3,015,196	+		GFF2948	0.72	-0.1
3,015,196	+		GFF2948	0.72	-1.5
3,015,204	-		GFF2948	0.72	+0.4
3,015,242	+		GFF2948	0.74	-0.9
3,015,279	-		GFF2948	0.76	+1.2
3,015,323	+		GFF2948	0.78	-1.9
3,015,340	+		GFF2948	0.79	-0.5
3,015,340	+		GFF2948	0.79	+1.0
3,015,340	+		GFF2948	0.79	-0.0
3,015,348	-		GFF2948	0.80	+0.8
3,015,348	-		GFF2948	0.80	+0.1
3,015,348	-		GFF2948	0.80	-1.2
3,015,361	+		GFF2948	0.80	+1.2
3,015,361	+		GFF2948	0.80	+0.4
3,015,361	+		GFF2948	0.80	-0.5
3,015,361	+		GFF2948	0.80	+0.5
3,015,366	+		GFF2948	0.81	+0.0
3,015,366	+		GFF2948	0.81	-0.5
3,015,367	+		GFF2948	0.81	-0.7
3,015,367	+		GFF2948	0.81	-1.3
3,015,367	+		GFF2948	0.81	-0.0
3,015,369	-		GFF2948	0.81	+0.9
3,015,369	-		GFF2948	0.81	+0.2
3,015,369	-		GFF2948	0.81	-0.8
3,015,370	-		GFF2948	0.81	-0.6
3,015,374	-		GFF2948	0.81	-1.3
3,015,374	-		GFF2948	0.81	+0.8
3,015,374	-		GFF2948	0.81	-1.9
3,015,375	-		GFF2948	0.81	+1.5
3,015,375	-		GFF2948	0.81	-1.2
3,015,390	-		GFF2948	0.82	+1.4
3,015,410	+		GFF2948	0.83	-1.4
3,015,444	+		GFF2948	0.85	+0.0
3,015,463	-		GFF2948	0.86	+1.0
3,015,475	-		GFF2948	0.86	-2.0
3,015,481	-		GFF2948	0.87	-0.4
3,015,488	+		GFF2948	0.87	+0.3
3,015,491	-		GFF2948	0.87	+1.0
3,015,496	-		GFF2948	0.87	-0.7
3,015,505	+		GFF2948	0.88	+0.8
3,015,506	+		GFF2948	0.88	-0.6
3,015,526	+		GFF2948	0.89	-0.7
3,015,533	-		GFF2948	0.89	+0.3
3,015,565	+				-1.0
3,015,581	+				+0.1
3,015,581	+				+0.5
3,015,581	+				-0.8
3,015,594	-				+0.5
3,015,621	-				-0.9
3,015,641	-				-1.0
3,015,641	-				+1.1
3,015,641	-				-2.4
3,015,641	-				-1.8
3,015,641	-				+0.6
3,015,670	-				+0.3
3,015,747	+				-0.1
3,015,777	-				-1.8
3,015,787	-				+0.8
3,015,787	-				+1.9
3,015,787	-				-0.1
3,015,816	+				-0.9
3,015,819	+				+0.3
3,015,819	+				-2.4
3,015,820	-				-0.1
3,015,846	+		GFF2949	0.12	+0.6
3,015,865	+		GFF2949	0.14	+0.2
3,015,875	-		GFF2949	0.15	-1.4
3,015,878	+		GFF2949	0.16	-0.9
3,015,883	+		GFF2949	0.16	-0.6
3,015,883	+		GFF2949	0.16	+0.7
3,015,886	+		GFF2949	0.17	-0.7
3,015,886	-		GFF2949	0.17	+0.3
3,015,901	+		GFF2949	0.18	-0.1
3,015,907	-		GFF2949	0.19	-0.0
3,015,909	-		GFF2949	0.19	-0.9
3,015,952	-		GFF2949	0.25	-1.3
3,015,954	+		GFF2949	0.25	+0.1
3,015,954	+		GFF2949	0.25	-1.7
3,015,954	+		GFF2949	0.25	-1.2
3,015,954	+		GFF2949	0.25	+0.7
3,015,954	+		GFF2949	0.25	+0.3
3,015,954	+		GFF2949	0.25	-0.7
3,015,954	+		GFF2949	0.25	-0.3
3,015,959	+		GFF2949	0.26	-0.1
3,015,959	+		GFF2949	0.26	-1.1
3,015,962	-		GFF2949	0.26	-0.6
3,015,962	-		GFF2949	0.26	+0.8
3,015,967	-		GFF2949	0.27	-2.4
3,015,972	+		GFF2949	0.27	-0.4
3,015,972	+		GFF2949	0.27	-1.1
3,015,972	+		GFF2949	0.27	+1.0
3,015,972	-		GFF2949	0.27	-0.0
3,016,000	+		GFF2949	0.31	+0.3
3,016,014	+		GFF2949	0.33	-0.6
3,016,019	+		GFF2949	0.33	-0.1
3,016,019	+		GFF2949	0.33	-0.0
3,016,019	+		GFF2949	0.33	+1.1
3,016,019	+		GFF2949	0.33	-1.1
3,016,019	+		GFF2949	0.33	+0.4
3,016,022	+		GFF2949	0.34	-0.0
3,016,024	+		GFF2949	0.34	-1.3
3,016,027	-		GFF2949	0.34	-1.1
3,016,027	-		GFF2949	0.34	+0.4
3,016,027	-		GFF2949	0.34	-0.3
3,016,027	-		GFF2949	0.34	-0.6
3,016,027	-		GFF2949	0.34	+0.4
3,016,032	-		GFF2949	0.35	+0.6
3,016,039	+		GFF2949	0.36	-1.6
3,016,045	+		GFF2949	0.37	+0.5
3,016,045	+		GFF2949	0.37	+0.4
3,016,045	+		GFF2949	0.37	-0.4
3,016,053	-		GFF2949	0.38	-0.8
3,016,053	-		GFF2949	0.38	-2.2
3,016,065	+		GFF2949	0.39	+0.4
3,016,071	-		GFF2949	0.40	-0.1
3,016,073	-		GFF2949	0.40	-1.3
3,016,080	+		GFF2949	0.41	+0.1
3,016,100	+		GFF2949	0.44	-1.1
3,016,100	+		GFF2949	0.44	+0.5
3,016,100	+		GFF2949	0.44	+1.3
3,016,100	+		GFF2949	0.44	-1.3
3,016,100	+		GFF2949	0.44	+1.0
3,016,100	+		GFF2949	0.44	-1.5
3,016,100	+		GFF2949	0.44	+1.4
3,016,100	+		GFF2949	0.44	-0.4
3,016,100	+		GFF2949	0.44	-0.1
3,016,100	+		GFF2949	0.44	-1.3
3,016,100	+		GFF2949	0.44	-0.6
3,016,108	-		GFF2949	0.45	+0.1
3,016,108	-		GFF2949	0.45	-0.6
3,016,108	-		GFF2949	0.45	-0.1
3,016,108	-		GFF2949	0.45	+0.1
3,016,108	-		GFF2949	0.45	-1.9
3,016,108	-		GFF2949	0.45	+0.5
3,016,108	-		GFF2949	0.45	-0.4
3,016,108	-		GFF2949	0.45	-0.4
3,016,108	-		GFF2949	0.45	+0.1
3,016,108	-		GFF2949	0.45	+1.0
3,016,108	-		GFF2949	0.45	+1.0
3,016,108	-		GFF2949	0.45	-0.9
3,016,146	+		GFF2949	0.49	-0.7
3,016,146	+		GFF2949	0.49	-0.9
3,016,146	+		GFF2949	0.49	+1.5
3,016,154	-		GFF2949	0.50	-2.3
3,016,154	-		GFF2949	0.50	+0.1
3,016,154	-		GFF2949	0.50	+0.1
3,016,154	-		GFF2949	0.50	+0.9
3,016,171	+		GFF2949	0.52	+0.2
3,016,179	-		GFF2949	0.53	-0.7
3,016,186	+		GFF2949	0.54	-0.6
3,016,189	-		GFF2949	0.55	-0.1
3,016,194	-		GFF2949	0.55	-0.1
3,016,194	-		GFF2949	0.55	+0.4
3,016,199	+		GFF2949	0.56	+0.4
3,016,199	-		GFF2949	0.56	+0.1
3,016,216	-		GFF2949	0.58	-1.3
3,016,216	-		GFF2949	0.58	-0.5
3,016,216	-		GFF2949	0.58	-1.1
3,016,218	-		GFF2949	0.58	-0.9
3,016,218	-		GFF2949	0.58	+1.0
3,016,230	+		GFF2949	0.60	+0.7
3,016,230	+		GFF2949	0.60	+0.6
3,016,233	-		GFF2949	0.60	-0.9
3,016,235	+		GFF2949	0.61	-0.7
3,016,238	-		GFF2949	0.61	-1.2
3,016,243	+		GFF2949	0.62	+1.0
3,016,243	+		GFF2949	0.62	+0.4
3,016,243	-		GFF2949	0.62	+0.5
3,016,251	-		GFF2949	0.63	-0.7
3,016,278	-		GFF2949	0.66	-1.8
3,016,289	+		GFF2949	0.67	+0.1
3,016,293	-		GFF2949	0.68	-1.3
3,016,294	-		GFF2949	0.68	+1.2
3,016,338	+		GFF2949	0.73	-1.2
3,016,340	-		GFF2949	0.74	-0.9
3,016,346	+		GFF2949	0.74	-0.2
3,016,346	+		GFF2949	0.74	+0.5
3,016,346	+		GFF2949	0.74	+0.8
3,016,346	+		GFF2949	0.74	+1.1
3,016,346	+		GFF2949	0.74	-0.6
3,016,354	-		GFF2949	0.75	-1.3
3,016,354	-		GFF2949	0.75	+0.2
3,016,354	-		GFF2949	0.75	+0.5
3,016,354	-		GFF2949	0.75	+0.8
3,016,356	+		GFF2949	0.76	+0.1
3,016,356	+		GFF2949	0.76	-0.3
3,016,356	+		GFF2949	0.76	-1.1
3,016,356	+		GFF2949	0.76	-2.9
3,016,359	-		GFF2949	0.76	-1.0
3,016,364	-		GFF2949	0.77	-0.2
3,016,364	-		GFF2949	0.77	-0.7
3,016,364	-		GFF2949	0.77	-0.9
3,016,364	-		GFF2949	0.77	-0.1
3,016,368	+		GFF2949	0.77	-1.1
3,016,371	-		GFF2949	0.78	-0.8
3,016,371	-		GFF2949	0.78	+1.4
3,016,376	-		GFF2949	0.78	-1.2
3,016,376	-		GFF2949	0.78	+0.7
3,016,376	-		GFF2949	0.78	-0.8
3,016,386	+		GFF2949	0.79	-0.2
3,016,390	+		GFF2949	0.80	+1.9
3,016,415	+		GFF2949	0.83	-0.1
3,016,442	+		GFF2949	0.87	-0.3
3,016,442	+		GFF2949	0.87	-0.9
3,016,450	-		GFF2949	0.88	-2.0
3,016,460	-		GFF2949	0.89	-2.3
3,016,469	+				+0.9
3,016,477	-				-0.3
3,016,477	-				-0.0
3,016,515	+				-0.2
3,016,520	+				-1.7
3,016,522	+				+0.5
3,016,522	+				-0.0
3,016,536	-				-0.9
3,016,582	-				+1.0
3,016,585	+				-1.4
3,016,592	+				+0.4
3,016,602	+				-0.8
3,016,607	+				+0.2
3,016,607	+				-1.0
3,016,610	-				-1.3
3,016,634	+				+0.8
3,016,636	+				+0.3
3,016,644	+				-0.5
3,016,644	+				-0.2
3,016,652	-		GFF2950	0.10	+1.2
3,016,665	+		GFF2950	0.11	-1.7
3,016,665	+		GFF2950	0.11	+1.3
3,016,671	-		GFF2950	0.12	+0.1
3,016,673	-		GFF2950	0.12	+0.3
3,016,673	-		GFF2950	0.12	+1.1
3,016,673	-		GFF2950	0.12	+0.0
3,016,729	-		GFF2950	0.17	-1.3
3,016,737	-		GFF2950	0.18	+1.1
3,016,744	+		GFF2950	0.19	+1.2
3,016,783	+		GFF2950	0.22	-0.1
3,016,790	+		GFF2950	0.23	+1.0
3,016,791	-		GFF2950	0.23	+0.0
3,016,791	-		GFF2950	0.23	+0.6
3,016,798	-		GFF2950	0.24	+0.2
3,016,802	+		GFF2950	0.24	-0.8
3,016,810	-		GFF2950	0.25	+0.8
3,016,822	+		GFF2950	0.26	-0.7
3,016,832	+		GFF2950	0.27	-2.0
3,016,866	+		GFF2950	0.30	+0.1
3,016,866	+		GFF2950	0.30	-0.5
3,016,874	-		GFF2950	0.31	-1.0
3,016,880	+		GFF2950	0.31	+0.3
3,016,880	+		GFF2950	0.31	+0.3
3,016,880	+		GFF2950	0.31	-1.3
3,016,880	+		GFF2950	0.31	+0.2
3,016,880	+		GFF2950	0.31	-0.3
3,016,887	+		GFF2950	0.32	-2.1
3,016,887	+		GFF2950	0.32	-1.0
3,016,888	-		GFF2950	0.32	+0.7
3,016,895	-		GFF2950	0.33	-1.0
3,016,900	+		GFF2950	0.33	-0.4
3,016,900	+		GFF2950	0.33	-0.5
3,016,905	-		GFF2950	0.34	-2.0
3,016,908	-		GFF2950	0.34	-2.1
3,016,908	-		GFF2950	0.34	+0.5
3,016,908	-		GFF2950	0.34	-0.4
3,016,908	-		GFF2950	0.34	-1.3
3,016,915	+		GFF2950	0.35	-2.4
3,016,915	+		GFF2950	0.35	+1.0
3,016,915	+		GFF2950	0.35	-0.0
3,016,923	-		GFF2950	0.35	+0.9
3,016,923	-		GFF2950	0.35	-0.7
3,016,923	-		GFF2950	0.35	+0.7
3,016,923	-		GFF2950	0.35	+0.4
3,016,938	+		GFF2950	0.37	-0.9
3,016,946	-		GFF2950	0.38	-2.0
3,016,947	+		GFF2950	0.38	-1.6
3,016,947	+		GFF2950	0.38	+0.6
3,016,947	+		GFF2950	0.38	-0.1
3,016,952	+		GFF2950	0.38	-0.5
3,016,955	-		GFF2950	0.38	+1.4
3,016,957	+		GFF2950	0.39	-0.2
3,016,957	+		GFF2950	0.39	-1.9
3,016,963	+		GFF2950	0.39	-1.1
3,016,965	-		GFF2950	0.39	-1.1
3,016,970	-		GFF2950	0.40	-0.0
3,016,971	-		GFF2950	0.40	-0.3
3,016,980	+		GFF2950	0.41	+0.4
3,016,980	+		GFF2950	0.41	-0.3
3,016,980	+		GFF2950	0.41	-0.0
3,016,980	+		GFF2950	0.41	-0.8
3,016,980	+		GFF2950	0.41	+0.3
3,016,987	+		GFF2950	0.41	-0.2
3,016,988	-		GFF2950	0.41	-0.5
3,016,988	-		GFF2950	0.41	-0.8
3,017,006	-		GFF2950	0.43	-0.7
3,017,016	+		GFF2950	0.44	-1.3
3,017,020	+		GFF2950	0.44	-2.0
3,017,020	+		GFF2950	0.44	-0.7
3,017,031	+		GFF2950	0.45	+0.7
3,017,069	+		GFF2950	0.49	-1.2
3,017,090	-		GFF2950	0.51	+0.6
3,017,108	+		GFF2950	0.53	+0.6
3,017,114	+		GFF2950	0.53	+0.1
3,017,128	-		GFF2950	0.54	-1.7
3,017,128	-		GFF2950	0.54	-1.5
3,017,154	+		GFF2950	0.57	-0.6
3,017,154	+		GFF2950	0.57	+0.4
3,017,154	+		GFF2950	0.57	+0.3
3,017,182	-		GFF2950	0.59	+0.8
3,017,185	+		GFF2950	0.60	+0.5
3,017,198	+		GFF2950	0.61	-1.0
3,017,198	-		GFF2950	0.61	-0.8
3,017,203	+		GFF2950	0.61	+1.0
3,017,205	+		GFF2950	0.61	+1.1
3,017,205	-		GFF2950	0.61	-0.9
3,017,213	-		GFF2950	0.62	+0.2
3,017,235	+		GFF2950	0.64	-1.0
3,017,237	-		GFF2950	0.64	+1.0
3,017,243	-		GFF2950	0.65	-0.7
3,017,254	+		GFF2950	0.66	+0.1
3,017,254	+		GFF2950	0.66	-1.1
3,017,254	+		GFF2950	0.66	+0.8
3,017,280	-		GFF2950	0.68	-0.2
3,017,292	+		GFF2950	0.70	-1.9
3,017,292	+		GFF2950	0.70	+1.2
3,017,292	+		GFF2950	0.70	+0.2
3,017,292	+		GFF2950	0.70	-0.9
3,017,292	+		GFF2950	0.70	+0.6
3,017,292	+		GFF2950	0.70	-0.3
3,017,292	+		GFF2950	0.70	-0.8
3,017,292	+		GFF2950	0.70	-0.6
3,017,292	+		GFF2950	0.70	+2.2
3,017,292	+		GFF2950	0.70	-1.6
3,017,292	+		GFF2950	0.70	+0.4
3,017,292	+		GFF2950	0.70	+0.8
3,017,292	+		GFF2950	0.70	-2.0
3,017,292	+		GFF2950	0.70	-2.3
3,017,292	+		GFF2950	0.70	-2.8
3,017,292	+		GFF2950	0.70	-0.3
3,017,292	+		GFF2950	0.70	-2.1
3,017,292	+		GFF2950	0.70	-1.6
3,017,300	-		GFF2950	0.70	-1.2
3,017,300	-		GFF2950	0.70	-0.1
3,017,300	-		GFF2950	0.70	-1.9
3,017,300	-		GFF2950	0.70	+0.1
3,017,300	-		GFF2950	0.70	+0.7
3,017,300	-		GFF2950	0.70	+1.5
3,017,300	-		GFF2950	0.70	+0.2
3,017,300	-		GFF2950	0.70	-0.5
3,017,300	-		GFF2950	0.70	-1.4
3,017,300	-		GFF2950	0.70	-1.8
3,017,300	-		GFF2950	0.70	-0.6
3,017,300	-		GFF2950	0.70	-2.3
3,017,300	-		GFF2950	0.70	+0.1
3,017,300	-		GFF2950	0.70	-0.7
3,017,300	-		GFF2950	0.70	+0.2
3,017,300	-		GFF2950	0.70	+0.7
3,017,300	-		GFF2950	0.70	-0.3
3,017,300	-		GFF2950	0.70	-0.4
3,017,300	-		GFF2950	0.70	-0.5
3,017,300	-		GFF2950	0.70	-0.6
3,017,300	-		GFF2950	0.70	+0.7
3,017,300	-		GFF2950	0.70	+0.5
3,017,300	-		GFF2950	0.70	+0.3
3,017,302	+		GFF2950	0.70	-0.3
3,017,302	+		GFF2950	0.70	+0.4
3,017,302	+		GFF2950	0.70	+0.9
3,017,302	+		GFF2950	0.70	-0.4
3,017,310	-		GFF2950	0.71	-1.6
3,017,310	-		GFF2950	0.71	-0.1
3,017,310	-		GFF2950	0.71	-0.2
3,017,310	-		GFF2950	0.71	-1.1
3,017,319	+		GFF2950	0.72	-1.0
3,017,369	+		GFF2950	0.77	+0.8
3,017,369	+		GFF2950	0.77	-1.4
3,017,391	+		GFF2950	0.79	-0.2
3,017,403	-		GFF2950	0.80	-1.3
3,017,438	+		GFF2950	0.83	-1.3
3,017,438	+		GFF2950	0.83	+0.4
3,017,438	+		GFF2950	0.83	+1.0
3,017,444	-		GFF2950	0.84	+0.7
3,017,446	-		GFF2950	0.84	+0.9
3,017,471	-		GFF2950	0.86	+0.4
3,017,482	-		GFF2950	0.87	+0.1
3,017,497	+		GFF2950	0.89	-0.3
3,017,505	-		GFF2950	0.89	+1.9
3,017,505	-		GFF2950	0.89	-2.3
3,017,543	-				+0.6