Strain Fitness in Sphingobium sp. HT1-2 around GFF2936

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,007,603	+		GFF2935	0.35	-0.3
3,007,611	-		GFF2935	0.36	+0.5
3,007,611	-		GFF2935	0.36	-0.9
3,007,613	+		GFF2935	0.36	+0.3
3,007,613	+		GFF2935	0.36	-1.1
3,007,616	-		GFF2935	0.36	+0.3
3,007,618	+		GFF2935	0.36	+0.0
3,007,640	+		GFF2935	0.38	+0.5
3,007,645	+		GFF2935	0.38	-0.5
3,007,645	+		GFF2935	0.38	-0.4
3,007,645	+		GFF2935	0.38	+0.3
3,007,653	+		GFF2935	0.39	-2.5
3,007,653	-		GFF2935	0.39	+1.0
3,007,655	+		GFF2935	0.39	-2.6
3,007,658	-		GFF2935	0.39	-0.1
3,007,658	-		GFF2935	0.39	-2.6
3,007,663	+		GFF2935	0.39	-1.2
3,007,663	-		GFF2935	0.39	+1.0
3,007,678	-		GFF2935	0.40	-0.1
3,007,678	-		GFF2935	0.40	+0.3
3,007,678	-		GFF2935	0.40	+0.1
3,007,694	+		GFF2935	0.41	-0.8
3,007,702	-		GFF2935	0.42	-0.9
3,007,702	-		GFF2935	0.42	-1.5
3,007,702	-		GFF2935	0.42	+0.3
3,007,717	+		GFF2935	0.43	+0.4
3,007,717	+		GFF2935	0.43	+0.5
3,007,717	+		GFF2935	0.43	-0.1
3,007,717	+		GFF2935	0.43	+1.2
3,007,717	+		GFF2935	0.43	-0.1
3,007,717	+		GFF2935	0.43	-0.2
3,007,725	-		GFF2935	0.43	-0.9
3,007,732	+		GFF2935	0.44	-1.3
3,007,736	-		GFF2935	0.44	-1.6
3,007,736	-		GFF2935	0.44	-2.9
3,007,751	+		GFF2935	0.45	-0.5
3,007,782	+		GFF2935	0.47	+0.5
3,007,790	+		GFF2935	0.47	-1.1
3,007,790	+		GFF2935	0.47	+0.5
3,007,790	+		GFF2935	0.47	-0.4
3,007,790	+		GFF2935	0.47	-0.7
3,007,790	+		GFF2935	0.47	+0.5
3,007,798	-		GFF2935	0.48	-1.4
3,007,798	-		GFF2935	0.48	+0.8
3,007,800	+		GFF2935	0.48	-0.4
3,007,808	-		GFF2935	0.49	+0.4
3,007,808	-		GFF2935	0.49	+0.2
3,007,808	-		GFF2935	0.49	+0.8
3,007,808	-		GFF2935	0.49	-0.1
3,007,833	+		GFF2935	0.50	-0.8
3,007,833	+		GFF2935	0.50	-0.8
3,007,841	-		GFF2935	0.51	+0.5
3,007,843	+		GFF2935	0.51	+0.1
3,007,843	+		GFF2935	0.51	-0.3
3,007,843	+		GFF2935	0.51	+1.0
3,007,843	+		GFF2935	0.51	+1.4
3,007,848	+		GFF2935	0.51	+0.0
3,007,848	+		GFF2935	0.51	+0.9
3,007,851	-		GFF2935	0.51	+1.2
3,007,851	-		GFF2935	0.51	+0.8
3,007,851	-		GFF2935	0.51	-1.1
3,007,851	-		GFF2935	0.51	-0.9
3,007,851	-		GFF2935	0.51	+0.2
3,007,851	-		GFF2935	0.51	-0.2
3,007,851	-		GFF2935	0.51	-1.8
3,007,851	-		GFF2935	0.51	+0.9
3,007,853	+		GFF2935	0.52	+0.3
3,007,856	-		GFF2935	0.52	+0.4
3,007,856	-		GFF2935	0.52	+0.9
3,007,870	+		GFF2935	0.53	+0.0
3,007,872	-		GFF2935	0.53	-0.5
3,007,889	+		GFF2935	0.54	-1.3
3,007,889	+		GFF2935	0.54	-0.1
3,007,889	+		GFF2935	0.54	-0.5
3,007,897	-		GFF2935	0.54	+1.4
3,007,897	-		GFF2935	0.54	-1.7
3,007,934	-		GFF2935	0.57	+0.3
3,007,971	-		GFF2935	0.59	-0.6
3,007,995	+		GFF2935	0.61	+0.6
3,008,005	+		GFF2935	0.61	-0.9
3,008,010	+		GFF2935	0.62	-0.0
3,008,012	-		GFF2935	0.62	+1.0
3,008,013	-		GFF2935	0.62	-0.1
3,008,086	+		GFF2935	0.67	-0.4
3,008,133	-		GFF2935	0.70	+0.5
3,008,151	+		GFF2935	0.71	+1.4
3,008,151	-		GFF2935	0.71	+0.2
3,008,155	+		GFF2935	0.71	-1.5
3,008,155	+		GFF2935	0.71	+0.2
3,008,155	+		GFF2935	0.71	+0.9
3,008,155	+		GFF2935	0.71	+0.0
3,008,155	+		GFF2935	0.71	-1.7
3,008,159	-		GFF2935	0.71	-0.4
3,008,163	-		GFF2935	0.71	-0.6
3,008,163	-		GFF2935	0.71	-1.6
3,008,163	-		GFF2935	0.71	+1.1
3,008,163	-		GFF2935	0.71	+0.3
3,008,163	-		GFF2935	0.71	+0.2
3,008,163	-		GFF2935	0.71	-1.2
3,008,179	+		GFF2935	0.73	-0.1
3,008,187	-		GFF2935	0.73	-0.2
3,008,194	+		GFF2935	0.73	-0.7
3,008,194	+		GFF2935	0.73	+1.1
3,008,194	+		GFF2935	0.73	-0.1
3,008,194	+		GFF2935	0.73	-1.6
3,008,194	+		GFF2935	0.73	-1.2
3,008,194	+		GFF2935	0.73	+0.3
3,008,202	-		GFF2935	0.74	-0.8
3,008,202	-		GFF2935	0.74	+0.1
3,008,202	-		GFF2935	0.74	-0.8
3,008,204	+		GFF2935	0.74	-1.5
3,008,204	+		GFF2935	0.74	+0.4
3,008,213	+		GFF2935	0.75	-0.1
3,008,214	+		GFF2935	0.75	+0.1
3,008,214	+		GFF2935	0.75	+0.2
3,008,238	+		GFF2935	0.76	-0.3
3,008,243	+		GFF2935	0.77	-0.6
3,008,243	+		GFF2935	0.77	-1.1
3,008,243	+		GFF2935	0.77	+0.1
3,008,246	-		GFF2935	0.77	-1.6
3,008,270	+		GFF2935	0.78	+2.1
3,008,270	+		GFF2935	0.78	+0.0
3,008,275	+		GFF2935	0.79	+0.7
3,008,275	+		GFF2935	0.79	+0.9
3,008,278	-		GFF2935	0.79	+0.6
3,008,278	-		GFF2935	0.79	+0.4
3,008,278	-		GFF2935	0.79	+0.9
3,008,278	-		GFF2935	0.79	-1.2
3,008,278	-		GFF2935	0.79	+0.7
3,008,278	-		GFF2935	0.79	-1.0
3,008,278	-		GFF2935	0.79	+0.1
3,008,280	+		GFF2935	0.79	-1.9
3,008,283	-		GFF2935	0.79	-0.6
3,008,283	-		GFF2935	0.79	+0.7
3,008,283	-		GFF2935	0.79	+0.9
3,008,283	-		GFF2935	0.79	-1.5
3,008,293	+		GFF2935	0.80	-0.1
3,008,293	+		GFF2935	0.80	+0.9
3,008,293	-		GFF2935	0.80	-0.2
3,008,299	+		GFF2935	0.80	+0.0
3,008,306	+		GFF2935	0.81	+1.2
3,008,307	-		GFF2935	0.81	-1.6
3,008,313	-		GFF2935	0.81	-2.1
3,008,314	-		GFF2935	0.81	-0.6
3,008,325	+		GFF2935	0.82	-1.9
3,008,344	-		GFF2935	0.83	-0.8
3,008,353	+		GFF2935	0.84	+0.4
3,008,355	+		GFF2935	0.84	+1.3
3,008,392	+		GFF2935	0.86	+0.7
3,008,392	+		GFF2935	0.86	-0.4
3,008,392	+		GFF2935	0.86	-2.1
3,008,392	+		GFF2935	0.86	-0.9
3,008,392	+		GFF2935	0.86	-1.1
3,008,400	-		GFF2935	0.87	-1.1
3,008,400	-		GFF2935	0.87	+1.3
3,008,429	+		GFF2935	0.89	+0.7
3,008,461	-				-0.0
3,008,476	-				-1.2
3,008,477	-				-0.7
3,008,485	+				+0.3
3,008,490	+				+1.0
3,008,490	+				-0.2
3,008,491	-				+1.5
3,008,500	+				-0.1
3,008,510	+				-0.9
3,008,529	+				+0.0
3,008,556	+				+0.3
3,008,563	-				-0.3
3,008,590	-				+0.9
3,008,590	-				+0.5
3,008,590	-				+0.8
3,008,590	-				+0.3
3,008,590	-				+0.7
3,008,598	-				-0.1
3,008,603	+				-0.7
3,008,603	+				-1.6
3,008,603	+				-0.3
3,008,603	+				-0.1
3,008,603	+				-0.6
3,008,603	+				+0.3
3,008,605	+				+0.3
3,008,611	-				-0.3
3,008,611	-				+0.9
3,008,611	-				-0.1
3,008,613	+				+0.2
3,008,618	+				-1.0
3,008,618	+				+0.9
3,008,671	-		GFF2936	0.19	-1.3
3,008,693	+		GFF2936	0.25	-0.5
3,008,693	+		GFF2936	0.25	-0.6
3,008,693	+		GFF2936	0.25	-0.5
3,008,693	+		GFF2936	0.25	-1.6
3,008,693	+		GFF2936	0.25	-0.5
3,008,693	+		GFF2936	0.25	-0.0
3,008,693	+		GFF2936	0.25	-0.4
3,008,693	+		GFF2936	0.25	-1.9
3,008,696	-		GFF2936	0.26	-1.1
3,008,701	-		GFF2936	0.28	-1.9
3,008,701	-		GFF2936	0.28	+1.3
3,008,701	-		GFF2936	0.28	-0.8
3,008,701	-		GFF2936	0.28	+0.4
3,008,701	-		GFF2936	0.28	+0.2
3,008,701	-		GFF2936	0.28	+1.1
3,008,701	-		GFF2936	0.28	-0.1
3,008,701	-		GFF2936	0.28	-1.2
3,008,701	-		GFF2936	0.28	-1.5
3,008,708	+		GFF2936	0.29	+0.5
3,008,708	+		GFF2936	0.29	-1.7
3,008,716	-		GFF2936	0.32	-1.2
3,008,716	-		GFF2936	0.32	+0.8
3,008,716	-		GFF2936	0.32	-1.1
3,008,716	-		GFF2936	0.32	+0.4
3,008,716	-		GFF2936	0.32	+1.5
3,008,723	-		GFF2936	0.34	+0.2
3,008,723	-		GFF2936	0.34	+0.3
3,008,748	-		GFF2936	0.41	+0.7
3,008,748	-		GFF2936	0.41	+0.3
3,008,748	-		GFF2936	0.41	-0.7
3,008,748	-		GFF2936	0.41	-0.1
3,008,754	+		GFF2936	0.42	-1.8
3,008,773	+		GFF2936	0.47	+0.4
3,008,773	+		GFF2936	0.47	-0.3
3,008,806	+		GFF2936	0.57	-0.9
3,008,813	-		GFF2936	0.59	+1.2
3,008,827	+		GFF2936	0.62	-0.4
3,008,852	-		GFF2936	0.69	+0.8
3,008,862	+		GFF2936	0.72	+0.7
3,008,909	+		GFF2936	0.85	+0.8
3,008,909	+		GFF2936	0.85	-1.2
3,008,914	+		GFF2936	0.87	+0.4
3,008,914	+		GFF2936	0.87	+0.2
3,008,914	+		GFF2936	0.87	-0.9
3,008,914	+		GFF2936	0.87	-0.0
3,008,917	-		GFF2936	0.88	+0.2
3,008,917	-		GFF2936	0.88	+1.3
3,008,917	-		GFF2936	0.88	-1.9
3,008,919	+		GFF2936	0.88	+1.4
3,008,919	+		GFF2936	0.88	+0.8
3,008,922	-		GFF2936	0.89	+1.0
3,008,922	-		GFF2936	0.89	-0.0
3,008,922	-		GFF2936	0.89	-1.7
3,008,922	-		GFF2936	0.89	+0.6
3,008,927	-				-0.2
3,008,927	-				+0.4
3,008,941	-				-0.5
3,008,952	+				+0.2
3,008,952	+				-0.9
3,008,952	+				-1.1
3,008,952	+				-1.4
3,008,952	+				-0.5
3,008,952	+				-0.2
3,008,952	+				+1.2
3,008,952	+				+0.8
3,008,960	-				-0.6
3,008,960	-				-1.2
3,008,960	-				-0.6
3,008,960	-				+0.3
3,008,960	-				+0.3
3,008,960	-				-0.3
3,008,963	+				-0.1
3,008,965	-				-1.9
3,008,974	+				+0.6
3,008,979	+				-0.4
3,008,982	+				+0.2
3,009,039	+		GFF2937	0.14	+0.5
3,009,042	-		GFF2937	0.14	+0.1
3,009,043	-		GFF2937	0.14	+1.1
3,009,072	+		GFF2937	0.19	+0.1
3,009,078	+		GFF2937	0.20	-0.9
3,009,078	+		GFF2937	0.20	-1.5
3,009,086	-		GFF2937	0.21	-2.3
3,009,086	-		GFF2937	0.21	+1.4
3,009,091	+		GFF2937	0.22	-1.4
3,009,101	-		GFF2937	0.24	-0.1
3,009,148	-		GFF2937	0.31	-0.6
3,009,148	-		GFF2937	0.31	-0.1
3,009,149	+		GFF2937	0.31	-0.6
3,009,150	+		GFF2937	0.32	-0.4
3,009,156	+		GFF2937	0.33	-1.0
3,009,156	+		GFF2937	0.33	+0.1
3,009,158	-		GFF2937	0.33	+1.0
3,009,158	-		GFF2937	0.33	-0.7
3,009,159	-		GFF2937	0.33	+1.2
3,009,161	+		GFF2937	0.33	-0.1
3,009,164	-		GFF2937	0.34	-0.4
3,009,164	-		GFF2937	0.34	-0.1
3,009,223	-		GFF2937	0.43	+0.2
3,009,223	-		GFF2937	0.43	-1.3
3,009,225	+		GFF2937	0.44	-1.6
3,009,245	+		GFF2937	0.47	-0.7
3,009,254	+		GFF2937	0.48	+1.2
3,009,254	+		GFF2937	0.48	-1.1
3,009,254	+		GFF2937	0.48	+0.1
3,009,254	+		GFF2937	0.48	+0.8
3,009,256	+		GFF2937	0.49	+0.2
3,009,262	-		GFF2937	0.50	+0.1
3,009,262	-		GFF2937	0.50	-2.4
3,009,262	-		GFF2937	0.50	-0.2
3,009,262	-		GFF2937	0.50	+0.1
3,009,262	-		GFF2937	0.50	-1.5
3,009,282	+		GFF2937	0.53	+0.2
3,009,287	-		GFF2937	0.54	-1.2
3,009,304	+		GFF2937	0.56	+0.5
3,009,312	-		GFF2937	0.58	-0.2
3,009,313	-		GFF2937	0.58	-1.4
3,009,315	+		GFF2937	0.58	-0.6
3,009,327	-		GFF2937	0.60	-1.4
3,009,330	+		GFF2937	0.61	-1.2
3,009,330	+		GFF2937	0.61	+0.6
3,009,330	+		GFF2937	0.61	+0.1
3,009,330	+		GFF2937	0.61	+0.4
3,009,335	+		GFF2937	0.61	-0.5
3,009,338	-		GFF2937	0.62	-0.6
3,009,338	-		GFF2937	0.62	-0.9
3,009,338	-		GFF2937	0.62	+1.2
3,009,338	-		GFF2937	0.62	-0.7
3,009,338	-		GFF2937	0.62	-1.3
3,009,340	+		GFF2937	0.62	-0.3
3,009,340	+		GFF2937	0.62	+1.5
3,009,340	+		GFF2937	0.62	-0.1
3,009,343	-		GFF2937	0.63	-0.6
3,009,352	-		GFF2937	0.64	-1.1
3,009,358	+		GFF2937	0.65	-1.9
3,009,361	-		GFF2937	0.66	-1.4
3,009,369	+		GFF2937	0.67	-0.1
3,009,392	-		GFF2937	0.71	-0.6
3,009,413	-		GFF2937	0.74	-0.9
3,009,415	+		GFF2937	0.74	+0.9
3,009,423	-		GFF2937	0.76	+0.6
3,009,423	-		GFF2937	0.76	-0.0
3,009,423	-		GFF2937	0.76	+1.6
3,009,424	-		GFF2937	0.76	-0.9
3,009,438	+		GFF2937	0.78	-0.5
3,009,467	-		GFF2937	0.83	-1.8
3,009,474	-		GFF2937	0.84	+0.8
3,009,562	+				-0.5
3,009,575	-				-0.3
3,009,575	-				+2.1
3,009,576	+				-2.1
3,009,576	+				-0.7
3,009,593	+				-0.9
3,009,713	+		GFF2938	0.25	-0.5
3,009,713	+		GFF2938	0.25	+0.1
3,009,713	+		GFF2938	0.25	-2.3
3,009,721	-		GFF2938	0.26	+0.4
3,009,747	+		GFF2938	0.31	-0.1
3,009,749	+		GFF2938	0.31	-0.2
3,009,757	-		GFF2938	0.32	-0.1
3,009,762	-		GFF2938	0.33	-0.6
3,009,768	-		GFF2938	0.34	-1.2
3,009,770	+		GFF2938	0.35	-1.2
3,009,770	+		GFF2938	0.35	-0.2
3,009,776	+		GFF2938	0.36	+0.1
3,009,778	-		GFF2938	0.36	-0.0
3,009,778	-		GFF2938	0.36	-0.9
3,009,790	-		GFF2938	0.38	+2.0
3,009,833	+		GFF2938	0.45	+0.4
3,009,833	+		GFF2938	0.45	-2.6
3,009,833	+		GFF2938	0.45	+0.7
3,009,841	-		GFF2938	0.46	+0.4
3,009,850	-		GFF2938	0.48	-1.1
3,009,857	+		GFF2938	0.49	-2.0
3,009,857	+		GFF2938	0.49	-1.4
3,009,857	+		GFF2938	0.49	-0.7
3,009,858	-		GFF2938	0.49	+0.1
3,009,860	-		GFF2938	0.50	-0.3
3,009,860	-		GFF2938	0.50	+0.4
3,009,865	-		GFF2938	0.50	+1.6
3,009,909	+		GFF2938	0.58	+0.4
3,009,917	-		GFF2938	0.59	-0.6
3,009,929	+		GFF2938	0.61	-0.8
3,009,960	-		GFF2938	0.66	-1.0