Strain Fitness in Sphingobium sp. HT1-2 around GFF2927

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,999,706	+		GFF2926	0.58	+0.2
2,999,714	-		GFF2926	0.58	+1.0
2,999,714	-		GFF2926	0.58	+0.2
2,999,714	-		GFF2926	0.58	-0.9
2,999,753	-		GFF2926	0.60	-1.3
2,999,772	-		GFF2926	0.61	-0.5
2,999,778	-		GFF2926	0.61	-1.1
2,999,793	+		GFF2926	0.62	-0.3
2,999,793	+		GFF2926	0.62	-0.8
2,999,796	-		GFF2926	0.62	+0.7
2,999,801	-		GFF2926	0.62	-0.3
2,999,805	+		GFF2926	0.62	-1.1
2,999,805	+		GFF2926	0.62	-0.3
2,999,806	-		GFF2926	0.62	-0.7
2,999,808	+		GFF2926	0.62	+1.1
2,999,811	-		GFF2926	0.62	-0.1
2,999,816	-		GFF2926	0.63	+0.5
2,999,831	+		GFF2926	0.63	-0.4
2,999,842	+		GFF2926	0.64	-0.3
2,999,850	-		GFF2926	0.64	-0.8
2,999,859	-		GFF2926	0.64	+0.6
2,999,866	-		GFF2926	0.65	-1.3
2,999,866	-		GFF2926	0.65	-0.1
2,999,868	+		GFF2926	0.65	+0.7
2,999,879	+		GFF2926	0.65	-0.6
2,999,900	+		GFF2926	0.66	-0.1
2,999,900	+		GFF2926	0.66	-0.5
2,999,900	+		GFF2926	0.66	-1.7
2,999,900	+		GFF2926	0.66	-1.7
2,999,900	+		GFF2926	0.66	-0.1
2,999,908	-		GFF2926	0.67	-0.0
2,999,908	-		GFF2926	0.67	+0.3
2,999,908	-		GFF2926	0.67	-0.9
2,999,940	+		GFF2926	0.68	+0.5
2,999,947	+		GFF2926	0.68	-0.9
2,999,947	+		GFF2926	0.68	-1.4
2,999,947	+		GFF2926	0.68	+1.0
2,999,947	+		GFF2926	0.68	+0.3
2,999,947	+		GFF2926	0.68	-0.2
2,999,955	-		GFF2926	0.69	+0.9
2,999,955	-		GFF2926	0.69	-1.9
2,999,955	-		GFF2926	0.69	+0.5
2,999,955	-		GFF2926	0.69	-0.9
2,999,955	-		GFF2926	0.69	-2.4
2,999,955	-		GFF2926	0.69	-0.0
2,999,955	-		GFF2926	0.69	-0.1
2,999,955	-		GFF2926	0.69	+1.2
2,999,957	+		GFF2926	0.69	-2.7
2,999,996	-		GFF2926	0.70	-0.4
3,000,000	-		GFF2926	0.71	+0.1
3,000,001	-		GFF2926	0.71	-0.2
3,000,001	-		GFF2926	0.71	-1.4
3,000,001	-		GFF2926	0.71	+0.2
3,000,046	-		GFF2926	0.73	-1.3
3,000,050	+		GFF2926	0.73	+0.4
3,000,051	-		GFF2926	0.73	-0.6
3,000,062	+		GFF2926	0.73	+0.4
3,000,081	+		GFF2926	0.74	-1.0
3,000,089	-		GFF2926	0.74	+0.4
3,000,111	-		GFF2926	0.75	+0.1
3,000,131	+		GFF2926	0.76	-1.1
3,000,137	-		GFF2926	0.77	-1.2
3,000,141	+		GFF2926	0.77	-0.0
3,000,168	+		GFF2926	0.78	+1.5
3,000,180	-		GFF2926	0.78	-0.5
3,000,181	+		GFF2926	0.78	-2.0
3,000,193	+		GFF2926	0.79	+0.2
3,000,244	-		GFF2926	0.81	-2.7
3,000,245	-		GFF2926	0.81	+0.5
3,000,245	-		GFF2926	0.81	-0.8
3,000,247	+		GFF2926	0.81	-0.6
3,000,247	+		GFF2926	0.81	-0.8
3,000,265	-		GFF2926	0.82	+0.1
3,000,265	-		GFF2926	0.82	+0.5
3,000,265	-		GFF2926	0.82	-0.0
3,000,276	+		GFF2926	0.83	-0.4
3,000,276	+		GFF2926	0.83	-0.0
3,000,287	+		GFF2926	0.83	-1.2
3,000,287	+		GFF2926	0.83	-0.6
3,000,291	+		GFF2926	0.83	-0.1
3,000,295	-		GFF2926	0.83	-1.2
3,000,313	+		GFF2926	0.84	-0.5
3,000,321	-		GFF2926	0.85	-0.3
3,000,321	-		GFF2926	0.85	+0.1
3,000,321	-		GFF2926	0.85	+0.7
3,000,323	+		GFF2926	0.85	-0.6
3,000,328	-		GFF2926	0.85	-1.6
3,000,328	-		GFF2926	0.85	+0.4
3,000,339	+		GFF2926	0.85	-0.5
3,000,339	+		GFF2926	0.85	+0.5
3,000,350	+		GFF2926	0.86	-2.1
3,000,350	+		GFF2926	0.86	+0.1
3,000,357	-		GFF2926	0.86	-0.0
3,000,357	-		GFF2926	0.86	-0.1
3,000,357	-		GFF2926	0.86	+0.0
3,000,358	-		GFF2926	0.86	-0.3
3,000,358	-		GFF2926	0.86	+0.2
3,000,358	-		GFF2926	0.86	-0.2
3,000,368	+		GFF2926	0.87	+0.8
3,000,368	+		GFF2926	0.87	+0.4
3,000,378	+		GFF2926	0.87	+0.9
3,000,416	+		GFF2926	0.89	-0.0
3,000,426	+		GFF2926	0.89	-1.5
3,000,426	+		GFF2926	0.89	+0.6
3,000,426	+		GFF2926	0.89	-0.6
3,000,426	+		GFF2926	0.89	+0.7
3,000,426	+		GFF2926	0.89	+0.2
3,000,426	+		GFF2926	0.89	+0.3
3,000,434	-		GFF2926	0.89	+1.0
3,000,434	-		GFF2926	0.89	-1.3
3,000,446	+				-1.5
3,000,451	+				-1.3
3,000,459	-				+0.4
3,000,464	-				-0.2
3,000,470	-				+0.3
3,000,487	+				-0.5
3,000,494	+				+0.6
3,000,494	+				-1.0
3,000,495	-				-1.4
3,000,500	-				+0.1
3,000,521	-				+0.3
3,000,531	+				-0.1
3,000,531	+				-0.3
3,000,532	-				-0.7
3,000,536	+				-1.2
3,000,536	+				-0.6
3,000,537	-				-0.4
3,000,539	-				-0.1
3,000,560	+				-0.4
3,000,562	+				-1.9
3,000,568	-				-0.4
3,000,586	+				-1.8
3,000,618	-				-1.3
3,000,620	+				-0.2
3,000,622	-				+0.9
3,000,630	-				+1.1
3,000,680	-				+0.4
3,000,692	+				-1.0
3,000,700	-				-0.1
3,000,703	+				-0.1
3,000,720	+				-0.9
3,000,720	+				-1.6
3,000,751	+		GFF2927	0.11	+0.5
3,000,784	-		GFF2927	0.16	+0.1
3,000,794	+		GFF2927	0.17	-0.8
3,000,820	+		GFF2927	0.21	-1.6
3,000,820	+		GFF2927	0.21	-1.1
3,000,820	+		GFF2927	0.21	+0.1
3,000,828	+		GFF2927	0.23	-0.9
3,000,828	-		GFF2927	0.23	+1.0
3,000,828	-		GFF2927	0.23	-0.7
3,000,836	-		GFF2927	0.24	-0.1
3,000,838	+		GFF2927	0.24	+0.7
3,000,865	+		GFF2927	0.29	-0.1
3,000,865	+		GFF2927	0.29	-0.6
3,000,865	+		GFF2927	0.29	-0.2
3,000,865	+		GFF2927	0.29	+0.2
3,000,865	+		GFF2927	0.29	+0.3
3,000,865	+		GFF2927	0.29	-0.7
3,000,865	+		GFF2927	0.29	-1.6
3,000,865	+		GFF2927	0.29	+0.5
3,000,865	+		GFF2927	0.29	-1.1
3,000,865	+		GFF2927	0.29	-0.3
3,000,865	+		GFF2927	0.29	+0.2
3,000,865	+		GFF2927	0.29	-0.5
3,000,865	+		GFF2927	0.29	+0.1
3,000,873	-		GFF2927	0.30	+0.1
3,000,873	-		GFF2927	0.30	-0.1
3,000,873	-		GFF2927	0.30	+0.1
3,000,873	-		GFF2927	0.30	+0.3
3,000,873	-		GFF2927	0.30	-1.9
3,000,873	-		GFF2927	0.30	+0.3
3,000,873	-		GFF2927	0.30	+1.0
3,000,888	+		GFF2927	0.32	-1.0
3,000,888	+		GFF2927	0.32	-1.7
3,000,888	+		GFF2927	0.32	-0.2
3,000,888	+		GFF2927	0.32	+1.9
3,000,888	+		GFF2927	0.32	+0.3
3,000,890	+		GFF2927	0.32	-1.3
3,000,890	+		GFF2927	0.32	-1.2
3,000,890	+		GFF2927	0.32	-0.9
3,000,890	+		GFF2927	0.32	-1.2
3,000,890	+		GFF2927	0.32	+0.2
3,000,890	+		GFF2927	0.32	+2.2
3,000,890	+		GFF2927	0.32	-0.6
3,000,890	+		GFF2927	0.32	-0.6
3,000,896	-		GFF2927	0.33	-0.4
3,000,896	-		GFF2927	0.33	-0.0
3,000,896	-		GFF2927	0.33	-1.1
3,000,896	-		GFF2927	0.33	-0.3
3,000,896	-		GFF2927	0.33	+1.0
3,000,896	-		GFF2927	0.33	-2.5
3,000,897	+		GFF2927	0.33	+1.2
3,000,898	-		GFF2927	0.34	-1.5
3,000,898	-		GFF2927	0.34	-1.2
3,000,898	-		GFF2927	0.34	-0.1
3,000,900	+		GFF2927	0.34	+0.6
3,000,905	-		GFF2927	0.35	-0.6
3,000,913	+		GFF2927	0.36	-1.2
3,000,916	-		GFF2927	0.36	+0.6
3,000,921	+		GFF2927	0.37	+0.7
3,000,934	+		GFF2927	0.39	+0.2
3,000,940	+		GFF2927	0.40	-0.7
3,000,957	+		GFF2927	0.43	-1.7
3,000,965	+		GFF2927	0.44	+0.0
3,000,965	-		GFF2927	0.44	-0.4
3,000,970	+		GFF2927	0.45	+0.1
3,000,970	-		GFF2927	0.45	-2.1
3,000,980	+		GFF2927	0.46	+0.6
3,000,981	+		GFF2927	0.47	-2.3
3,000,989	-		GFF2927	0.48	+0.1
3,000,999	+		GFF2927	0.49	-0.6
3,000,999	+		GFF2927	0.49	+0.3
3,000,999	+		GFF2927	0.49	-2.6
3,000,999	+		GFF2927	0.49	+0.8
3,000,999	+		GFF2927	0.49	-1.2
3,001,002	-		GFF2927	0.50	+0.7
3,001,002	-		GFF2927	0.50	+0.3
3,001,002	-		GFF2927	0.50	-2.1
3,001,002	-		GFF2927	0.50	-0.6
3,001,007	-		GFF2927	0.51	+1.2
3,001,007	-		GFF2927	0.51	-0.3
3,001,007	-		GFF2927	0.51	+1.7
3,001,007	-		GFF2927	0.51	+1.4
3,001,007	-		GFF2927	0.51	+0.9
3,001,007	-		GFF2927	0.51	+0.4
3,001,007	-		GFF2927	0.51	-0.1
3,001,010	+		GFF2927	0.51	-0.2
3,001,012	-		GFF2927	0.51	+0.8
3,001,014	+		GFF2927	0.52	-0.9
3,001,014	+		GFF2927	0.52	-1.9
3,001,022	-		GFF2927	0.53	+0.4
3,001,022	-		GFF2927	0.53	-1.0
3,001,082	+		GFF2927	0.62	-0.0
3,001,082	+		GFF2927	0.62	-0.6
3,001,108	+		GFF2927	0.66	+1.0
3,001,116	-		GFF2927	0.68	-0.5
3,001,116	-		GFF2927	0.68	+1.6
3,001,116	-		GFF2927	0.68	-0.6
3,001,116	-		GFF2927	0.68	-0.4
3,001,116	-		GFF2927	0.68	-0.4
3,001,117	-		GFF2927	0.68	+0.8
3,001,118	+		GFF2927	0.68	+0.0
3,001,119	+		GFF2927	0.68	-1.0
3,001,119	+		GFF2927	0.68	-0.3
3,001,129	+		GFF2927	0.70	-0.6
3,001,129	+		GFF2927	0.70	-0.0
3,001,129	+		GFF2927	0.70	+1.0
3,001,129	+		GFF2927	0.70	+0.4
3,001,129	+		GFF2927	0.70	+1.1
3,001,129	+		GFF2927	0.70	+0.2
3,001,129	+		GFF2927	0.70	+0.6
3,001,129	+		GFF2927	0.70	+0.4
3,001,129	+		GFF2927	0.70	-1.2
3,001,129	+		GFF2927	0.70	+0.7
3,001,129	+		GFF2927	0.70	+0.4
3,001,132	-		GFF2927	0.70	-1.6
3,001,137	-		GFF2927	0.71	-1.9
3,001,137	-		GFF2927	0.71	+1.1
3,001,137	-		GFF2927	0.71	-0.1
3,001,172	+		GFF2927	0.76	-0.9
3,001,206	-		GFF2927	0.82	-0.2
3,001,244	+		GFF2927	0.88	-0.2
3,001,244	+		GFF2927	0.88	+0.3
3,001,246	+		GFF2927	0.88	-0.7
3,001,259	+				+0.1
3,001,262	+				+0.5
3,001,265	-				-0.2
3,001,267	-				+0.1
3,001,280	-				+0.4
3,001,348	+				-0.1
3,001,409	-				-0.7
3,001,449	+				-2.0
3,001,459	-				+0.2
3,001,487	-				+0.8
3,001,506	+				-1.0
3,001,506	+				-0.9
3,001,545	+		GFF2928	0.12	-0.4
3,001,545	+		GFF2928	0.12	-1.5
3,001,553	-		GFF2928	0.14	-0.8
3,001,553	-		GFF2928	0.14	+0.4
3,001,553	-		GFF2928	0.14	-0.3
3,001,580	+		GFF2928	0.20	-1.3
3,001,580	+		GFF2928	0.20	+1.2
3,001,580	+		GFF2928	0.20	-0.9
3,001,583	-		GFF2928	0.21	-0.1
3,001,588	-		GFF2928	0.22	+0.6
3,001,588	-		GFF2928	0.22	-1.2
3,001,588	-		GFF2928	0.22	+1.2
3,001,588	-		GFF2928	0.22	+0.3
3,001,592	+		GFF2928	0.23	+0.4
3,001,600	-		GFF2928	0.25	-0.8
3,001,607	+		GFF2928	0.26	-0.8
3,001,607	+		GFF2928	0.26	+0.7
3,001,607	+		GFF2928	0.26	-0.4
3,001,612	+		GFF2928	0.27	-1.2
3,001,615	-		GFF2928	0.28	-0.4
3,001,620	-		GFF2928	0.29	+0.1
3,001,625	+		GFF2928	0.30	+1.4
3,001,633	-		GFF2928	0.32	-1.3
3,001,638	-		GFF2928	0.33	-0.1
3,001,649	+		GFF2928	0.36	-0.4
3,001,652	-		GFF2928	0.37	+1.2
3,001,662	-		GFF2928	0.39	+0.7
3,001,673	-		GFF2928	0.41	+0.4
3,001,683	+		GFF2928	0.44	-2.0
3,001,712	-		GFF2928	0.50	-0.6
3,001,740	-		GFF2928	0.57	+0.7
3,001,764	+		GFF2928	0.62	+0.7
3,001,764	+		GFF2928	0.62	+1.2
3,001,772	-		GFF2928	0.64	+0.8
3,001,772	-		GFF2928	0.64	-0.1
3,001,785	-		GFF2928	0.67	+1.6
3,001,798	+		GFF2928	0.70	+1.1
3,001,798	+		GFF2928	0.70	-1.3
3,001,806	-		GFF2928	0.72	-0.7
3,001,806	-		GFF2928	0.72	-0.1
3,001,806	-		GFF2928	0.72	-1.0
3,001,806	-		GFF2928	0.72	-1.9
3,001,814	+		GFF2928	0.74	+0.1
3,001,822	+		GFF2928	0.76	+0.7
3,001,822	-		GFF2928	0.76	-0.4
3,001,822	-		GFF2928	0.76	-0.4
3,001,840	+		GFF2928	0.80	+0.1
3,001,848	-		GFF2928	0.82	-2.0
3,001,854	+		GFF2928	0.83	+0.5
3,001,867	-		GFF2928	0.86	+1.1
3,001,867	-		GFF2928	0.86	-0.3
3,001,881	+		GFF2928	0.89	-1.1
3,001,886	+				+0.7
3,001,886	+				-0.0
3,001,891	+				+0.0
3,001,892	-				-0.5
3,001,894	-				-0.2
3,001,899	-				+0.9
3,001,899	-				+0.5
3,001,928	+				+0.1
3,001,928	+				+0.8
3,001,928	+				+0.2
3,001,936	-				-1.5
3,001,936	-				-0.7
3,001,936	-				+1.0
3,001,936	-				-0.0
3,001,995	+				-0.9
3,001,995	+				-0.1
3,002,019	+				-1.4
3,002,025	+				+1.6
3,002,025	+				+1.1
3,002,028	-				-1.3
3,002,045	+				+0.3
3,002,045	+				-0.1
3,002,045	+				-0.6
3,002,045	+				-1.8
3,002,045	+				-1.8
3,002,045	+				-0.8
3,002,045	+				+0.4
3,002,045	+				-1.6
3,002,045	+				-0.7
3,002,053	-				-1.5
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