Strain Fitness in Sphingobium sp. HT1-2 around GFF2890

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,950,320	-		GFF2888	0.56	-0.0
2,950,326	-		GFF2888	0.56	-0.9
2,950,326	-		GFF2888	0.56	-0.2
2,950,326	-		GFF2888	0.56	-1.6
2,950,331	+		GFF2888	0.57	+0.8
2,950,331	+		GFF2888	0.57	-0.8
2,950,336	+		GFF2888	0.57	-0.1
2,950,339	-		GFF2888	0.57	+0.4
2,950,342	+		GFF2888	0.57	-0.4
2,950,344	-		GFF2888	0.58	-0.3
2,950,369	+		GFF2888	0.59	-0.0
2,950,378	-		GFF2888	0.60	-0.2
2,950,385	-		GFF2888	0.60	+0.9
2,950,390	-		GFF2888	0.60	-0.7
2,950,400	+		GFF2888	0.61	+0.9
2,950,403	+		GFF2888	0.61	+0.1
2,950,427	+		GFF2888	0.63	+0.5
2,950,437	+		GFF2888	0.63	-0.1
2,950,445	-		GFF2888	0.64	+0.3
2,950,445	-		GFF2888	0.64	-0.9
2,950,522	+		GFF2888	0.68	-1.0
2,950,522	+		GFF2888	0.68	+0.9
2,950,529	+		GFF2888	0.69	-1.4
2,950,530	-		GFF2888	0.69	+0.3
2,950,530	-		GFF2888	0.69	-2.4
2,950,537	-		GFF2888	0.69	-2.0
2,950,537	-		GFF2888	0.69	-1.0
2,950,537	-		GFF2888	0.69	+0.0
2,950,547	-		GFF2888	0.70	+0.9
2,950,547	-		GFF2888	0.70	-0.3
2,950,552	-		GFF2888	0.70	+1.4
2,950,552	-		GFF2888	0.70	+0.4
2,950,565	+		GFF2888	0.71	-1.3
2,950,565	+		GFF2888	0.71	-0.0
2,950,565	+		GFF2888	0.71	+0.2
2,950,571	-		GFF2888	0.71	-1.0
2,950,573	+		GFF2888	0.72	-1.4
2,950,573	+		GFF2888	0.72	-1.1
2,950,573	-		GFF2888	0.72	+1.0
2,950,573	-		GFF2888	0.72	+1.1
2,950,581	-		GFF2888	0.72	-2.0
2,950,581	-		GFF2888	0.72	+0.6
2,950,581	-		GFF2888	0.72	+0.8
2,950,581	-		GFF2888	0.72	-0.6
2,950,613	+		GFF2888	0.74	+0.2
2,950,613	+		GFF2888	0.74	+0.4
2,950,613	+		GFF2888	0.74	+0.3
2,950,613	+		GFF2888	0.74	+0.1
2,950,621	-		GFF2888	0.74	-0.3
2,950,621	-		GFF2888	0.74	-0.8
2,950,621	-		GFF2888	0.74	-1.3
2,950,635	-		GFF2888	0.75	-1.5
2,950,640	+		GFF2888	0.76	-1.7
2,950,642	+		GFF2888	0.76	-0.1
2,950,645	+		GFF2888	0.76	-0.4
2,950,647	+		GFF2888	0.76	+1.2
2,950,650	-		GFF2888	0.76	-0.1
2,950,655	+		GFF2888	0.77	-1.2
2,950,663	-		GFF2888	0.77	+0.3
2,950,663	-		GFF2888	0.77	-0.2
2,950,681	+		GFF2888	0.78	-0.4
2,950,681	+		GFF2888	0.78	+1.5
2,950,686	+		GFF2888	0.78	+0.1
2,950,691	+		GFF2888	0.79	-0.4
2,950,691	+		GFF2888	0.79	-0.7
2,950,691	+		GFF2888	0.79	-1.7
2,950,691	+		GFF2888	0.79	-0.4
2,950,691	+		GFF2888	0.79	-1.7
2,950,691	+		GFF2888	0.79	+0.8
2,950,691	+		GFF2888	0.79	-0.0
2,950,691	+		GFF2888	0.79	-1.0
2,950,691	+		GFF2888	0.79	+0.2
2,950,691	+		GFF2888	0.79	-0.4
2,950,691	+		GFF2888	0.79	+0.4
2,950,691	+		GFF2888	0.79	+0.3
2,950,691	+		GFF2888	0.79	-0.7
2,950,699	-		GFF2888	0.79	-0.7
2,950,699	-		GFF2888	0.79	-0.5
2,950,699	-		GFF2888	0.79	-2.5
2,950,699	-		GFF2888	0.79	+1.3
2,950,699	-		GFF2888	0.79	+1.1
2,950,699	-		GFF2888	0.79	-0.0
2,950,699	-		GFF2888	0.79	-1.6
2,950,699	-		GFF2888	0.79	+0.5
2,950,699	-		GFF2888	0.79	+1.2
2,950,699	-		GFF2888	0.79	-0.5
2,950,699	-		GFF2888	0.79	-1.5
2,950,699	-		GFF2888	0.79	-1.0
2,950,699	-		GFF2888	0.79	-1.6
2,950,699	-		GFF2888	0.79	+0.8
2,950,699	-		GFF2888	0.79	-0.9
2,950,699	-		GFF2888	0.79	+0.1
2,950,699	-		GFF2888	0.79	+0.5
2,950,699	-		GFF2888	0.79	-0.6
2,950,706	+		GFF2888	0.80	-0.9
2,950,706	+		GFF2888	0.80	+0.3
2,950,706	+		GFF2888	0.80	+0.7
2,950,709	-		GFF2888	0.80	-1.2
2,950,714	-		GFF2888	0.80	-1.7
2,950,714	-		GFF2888	0.80	+0.4
2,950,719	-		GFF2888	0.80	-1.1
2,950,724	-		GFF2888	0.81	+0.1
2,950,724	-		GFF2888	0.81	+0.9
2,950,724	-		GFF2888	0.81	-0.0
2,950,745	+		GFF2888	0.82	+0.2
2,950,753	-		GFF2888	0.83	-0.2
2,950,772	-		GFF2888	0.84	-2.3
2,950,778	+		GFF2888	0.84	-1.1
2,950,803	-		GFF2888	0.86	-0.6
2,950,824	-		GFF2888	0.87	+1.8
2,950,824	-		GFF2888	0.87	-1.5
2,950,830	+		GFF2888	0.87	-0.5
2,950,830	+		GFF2888	0.87	+0.8
2,950,836	+		GFF2888	0.88	-0.4
2,950,836	+		GFF2888	0.88	-1.9
2,950,838	-		GFF2888	0.88	+1.2
2,950,856	+		GFF2888	0.89	-0.7
2,950,862	-		GFF2888	0.89	-0.4
2,950,862	-		GFF2888	0.89	-0.8
2,950,876	+				-1.3
2,950,877	+				+1.3
2,950,911	-				-1.4
2,950,934	+				-0.7
2,950,939	+				-0.1
2,950,939	+				-0.2
2,950,939	+				+0.4
2,950,939	+				+0.4
2,950,939	+				+0.2
2,950,939	+				+0.5
2,950,939	+				-1.8
2,950,939	+				-1.7
2,950,947	-				-1.9
2,950,947	-				-0.4
2,950,947	-				+1.4
2,950,947	-				-0.0
2,950,947	-				-0.1
2,950,947	-				+0.1
2,950,947	-				-0.1
2,950,963	-				-0.0
2,950,963	-				-0.1
2,950,963	-				-1.3
2,950,963	-				-1.2
2,950,963	-				-1.3
2,950,963	-				+0.7
2,950,963	-				-0.5
2,950,983	+				-0.0
2,950,987	-				+0.9
2,951,001	-				+0.1
2,951,032	+				+0.2
2,951,032	+				-0.4
2,951,032	+				+0.5
2,951,054	-				-0.3
2,951,063	+		GFF2889	0.12	-0.6
2,951,070	+		GFF2889	0.15	-0.2
2,951,071	-		GFF2889	0.16	-0.9
2,951,096	-		GFF2889	0.26	+0.9
2,951,096	-		GFF2889	0.26	-0.3
2,951,104	+		GFF2889	0.29	-0.1
2,951,104	-		GFF2889	0.29	-0.0
2,951,105	+		GFF2889	0.29	-0.5
2,951,113	-		GFF2889	0.33	+1.2
2,951,138	+		GFF2889	0.43	-0.3
2,951,138	+		GFF2889	0.43	-1.7
2,951,138	+		GFF2889	0.43	+0.8
2,951,141	-		GFF2889	0.44	-0.7
2,951,146	-		GFF2889	0.46	-1.3
2,951,174	+		GFF2889	0.57	-1.5
2,951,234	+		GFF2889	0.81	+0.5
2,951,299	-				-0.0
2,951,299	-				-1.8
2,951,308	-				-1.6
2,951,420	+		GFF2890	0.15	+0.4
2,951,448	-		GFF2890	0.19	-0.9
2,951,530	-		GFF2890	0.31	-1.1
2,951,543	+		GFF2890	0.33	-0.3
2,951,551	-		GFF2890	0.34	-1.4
2,951,551	-		GFF2890	0.34	-0.7
2,951,551	-		GFF2890	0.34	+0.5
2,951,551	-		GFF2890	0.34	-1.9
2,951,618	+		GFF2890	0.44	-1.2
2,951,627	-		GFF2890	0.45	-1.3
2,951,730	+		GFF2890	0.60	-1.3
2,951,776	-		GFF2890	0.67	-0.2
2,951,797	-		GFF2890	0.70	-0.5
2,951,797	-		GFF2890	0.70	-1.7
2,951,817	-		GFF2890	0.73	-1.1
2,951,906	+		GFF2890	0.86	+0.3
2,951,936	+				-1.7
2,951,953	+				-0.0
2,951,961	-				+0.5
2,951,961	-				+1.2
2,951,961	-				-1.2
2,951,972	+				+0.2
2,952,008	-				+0.1
2,952,008	-				+0.3
2,952,021	+				-0.1
2,952,026	+				-1.4
2,952,027	+				-0.3
2,952,027	+				+0.6
2,952,027	+				-0.4
2,952,029	-				-0.8
2,952,035	-				+0.2
2,952,035	-				-0.1
2,952,057	+				-1.2
2,952,072	+				-1.9
2,952,072	+				-1.7
2,952,072	+				+1.7
2,952,072	+				+0.0
2,952,076	+				+0.6
2,952,080	-				-0.8
2,952,080	-				+0.7
2,952,080	-				-0.1
2,952,084	+				-1.5
2,952,090	+				-1.7
2,952,092	-				-1.1
2,952,098	-				+0.7
2,952,143	-				-1.1
2,952,202	+		GFF2891	0.15	-1.1
2,952,210	-		GFF2891	0.16	-0.9
2,952,210	-		GFF2891	0.16	-1.1
2,952,284	+		GFF2891	0.26	+0.3
2,952,289	+		GFF2891	0.26	-1.3
2,952,297	-		GFF2891	0.27	-1.2
2,952,297	-		GFF2891	0.27	-1.2
2,952,363	+		GFF2891	0.36	-1.1
2,952,690	-		GFF2891	0.79	+0.4
2,952,817	+				-1.5
2,952,817	+				+1.2
2,952,825	-				-2.0
2,952,829	+				-1.2
2,952,829	+				-0.1
2,952,829	+				+0.5
2,952,829	+				+0.9
2,952,829	+				+0.4
2,952,829	+				-0.3
2,952,829	+				-1.5
2,952,829	+				-1.5
2,952,829	+				-1.4
2,952,832	-				+0.4
2,952,834	+				-2.1
2,952,834	+				+1.1
2,952,834	+				-0.6
2,952,837	-				-0.2
2,952,837	-				-0.7
2,952,837	-				+0.6
2,952,837	-				+1.3
2,952,837	-				-1.4
2,952,837	-				+0.1
2,952,837	-				-0.7
2,952,837	-				-1.3
2,952,837	-				-1.3
2,952,837	-				+0.3
2,952,837	-				+0.9
2,952,837	-				-0.9
2,952,837	-				-1.0
2,952,837	-				+0.1
2,952,837	-				-0.3
2,952,837	-				-0.6
2,952,837	-				-2.3
2,952,837	-				+0.2
2,952,842	-				-0.9
2,952,842	-				-1.0
2,952,842	-				-1.4
2,952,842	-				+0.8
2,952,842	-				-1.3
2,952,842	-				-0.2
2,952,842	-				-0.1
2,952,876	-				-1.1
2,952,878	-				+0.7
2,952,883	-				-0.0
2,952,883	-				-0.5
2,952,898	+				+0.1
2,952,899	-				-0.6
2,952,945	-				-0.1
2,952,948	+				-0.6
2,952,948	+				-0.6
2,952,948	+				-1.8
2,952,948	+				-0.1
2,952,948	+				+0.9
2,952,956	-				-0.3
2,952,956	-				-0.2
2,952,956	-				-1.5
2,952,956	-				-1.6
2,952,956	-				-0.4
2,952,956	-				+0.8
2,952,989	+				-0.0
2,952,990	-				-0.6
2,952,998	+				-1.7
2,952,999	+				-1.1
2,953,000	+				-0.0
2,953,000	+				+1.9
2,953,000	+				-0.2