Strain Fitness in Sphingobium sp. HT1-2 around GFF2850

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,905,598	+		GFF2849	0.39	+0.3
2,905,619	-		GFF2849	0.40	-2.7
2,905,636	-		GFF2849	0.41	+0.1
2,905,646	+		GFF2849	0.42	+0.3
2,905,651	+		GFF2849	0.42	-2.4
2,905,653	+		GFF2849	0.42	+1.0
2,905,654	-		GFF2849	0.42	-1.3
2,905,677	-		GFF2849	0.44	-0.5
2,905,677	-		GFF2849	0.44	-1.3
2,905,687	+		GFF2849	0.44	+0.3
2,905,692	+		GFF2849	0.45	-0.0
2,905,692	+		GFF2849	0.45	+1.6
2,905,697	+		GFF2849	0.45	-0.2
2,905,697	+		GFF2849	0.45	-0.3
2,905,700	-		GFF2849	0.45	-3.3
2,905,700	-		GFF2849	0.45	-2.1
2,905,700	-		GFF2849	0.45	-0.4
2,905,716	+		GFF2849	0.46	-1.1
2,905,716	+		GFF2849	0.46	-0.8
2,905,716	+		GFF2849	0.46	-1.3
2,905,716	+		GFF2849	0.46	-2.1
2,905,716	+		GFF2849	0.46	-1.7
2,905,716	+		GFF2849	0.46	+0.5
2,905,716	+		GFF2849	0.46	+1.2
2,905,716	+		GFF2849	0.46	+0.8
2,905,716	+		GFF2849	0.46	-1.7
2,905,716	+		GFF2849	0.46	-2.8
2,905,721	+		GFF2849	0.47	-0.3
2,905,721	+		GFF2849	0.47	-0.3
2,905,724	-		GFF2849	0.47	+0.6
2,905,724	-		GFF2849	0.47	-2.3
2,905,724	-		GFF2849	0.47	-2.5
2,905,724	-		GFF2849	0.47	+0.2
2,905,724	-		GFF2849	0.47	-0.5
2,905,724	-		GFF2849	0.47	-1.1
2,905,724	-		GFF2849	0.47	-0.7
2,905,724	-		GFF2849	0.47	+0.7
2,905,724	-		GFF2849	0.47	-0.8
2,905,724	-		GFF2849	0.47	-0.2
2,905,729	-		GFF2849	0.47	-0.5
2,905,734	-		GFF2849	0.47	-1.0
2,905,746	+		GFF2849	0.48	-1.0
2,905,773	+		GFF2849	0.50	-2.1
2,905,781	-		GFF2849	0.50	+0.0
2,905,783	+		GFF2849	0.50	-1.5
2,905,783	+		GFF2849	0.50	-2.3
2,905,786	-		GFF2849	0.51	-1.0
2,905,788	+		GFF2849	0.51	-0.6
2,905,788	+		GFF2849	0.51	-1.7
2,905,788	+		GFF2849	0.51	-0.2
2,905,791	-		GFF2849	0.51	+1.3
2,905,791	-		GFF2849	0.51	-0.4
2,905,791	-		GFF2849	0.51	+0.7
2,905,791	-		GFF2849	0.51	+0.8
2,905,793	+		GFF2849	0.51	-0.5
2,905,796	-		GFF2849	0.51	+0.4
2,905,796	-		GFF2849	0.51	-0.3
2,905,801	-		GFF2849	0.52	+1.2
2,905,826	-		GFF2849	0.53	+0.6
2,905,828	+		GFF2849	0.53	+0.7
2,905,828	+		GFF2849	0.53	-0.8
2,905,828	+		GFF2849	0.53	+0.4
2,905,834	-		GFF2849	0.54	-0.1
2,905,834	-		GFF2849	0.54	-0.1
2,905,836	-		GFF2849	0.54	+0.6
2,905,836	-		GFF2849	0.54	-2.5
2,905,837	-		GFF2849	0.54	-1.5
2,905,842	+		GFF2849	0.54	-1.6
2,905,883	-		GFF2849	0.57	-0.1
2,905,883	-		GFF2849	0.57	+0.6
2,905,886	+		GFF2849	0.57	+1.0
2,905,886	+		GFF2849	0.57	-1.5
2,905,891	+		GFF2849	0.57	-0.2
2,905,891	+		GFF2849	0.57	-1.8
2,905,894	-		GFF2849	0.57	-0.6
2,905,894	-		GFF2849	0.57	+0.6
2,905,894	-		GFF2849	0.57	-1.2
2,905,899	-		GFF2849	0.58	+0.1
2,905,923	+		GFF2849	0.59	-0.6
2,905,933	+		GFF2849	0.60	+0.5
2,905,933	+		GFF2849	0.60	-1.2
2,905,941	-		GFF2849	0.60	-1.8
2,905,941	-		GFF2849	0.60	-2.7
2,905,948	+		GFF2849	0.61	+0.2
2,905,948	+		GFF2849	0.61	-2.7
2,905,948	+		GFF2849	0.61	-0.3
2,905,948	+		GFF2849	0.61	+0.9
2,905,948	+		GFF2849	0.61	-1.1
2,905,948	+		GFF2849	0.61	-1.8
2,905,948	+		GFF2849	0.61	+0.1
2,905,956	-		GFF2849	0.61	-0.5
2,905,956	-		GFF2849	0.61	-0.3
2,905,956	-		GFF2849	0.61	+0.4
2,905,956	-		GFF2849	0.61	+0.5
2,906,022	+		GFF2849	0.65	+1.0
2,906,025	+		GFF2849	0.65	-0.6
2,906,039	+		GFF2849	0.66	+0.3
2,906,052	-		GFF2849	0.67	-0.1
2,906,085	+		GFF2849	0.69	+0.1
2,906,093	-		GFF2849	0.70	+1.6
2,906,095	+		GFF2849	0.70	-0.3
2,906,104	+		GFF2849	0.70	+0.3
2,906,127	-		GFF2849	0.72	-1.6
2,906,145	+		GFF2849	0.73	-0.2
2,906,145	+		GFF2849	0.73	-1.2
2,906,145	+		GFF2849	0.73	+0.9
2,906,145	+		GFF2849	0.73	+0.0
2,906,153	-		GFF2849	0.73	-0.7
2,906,153	-		GFF2849	0.73	+0.2
2,906,153	-		GFF2849	0.73	+0.1
2,906,153	-		GFF2849	0.73	-0.8
2,906,184	+		GFF2849	0.75	-0.3
2,906,190	+		GFF2849	0.76	-0.3
2,906,208	+		GFF2849	0.77	-1.8
2,906,213	+		GFF2849	0.77	-0.7
2,906,216	-		GFF2849	0.77	-1.1
2,906,216	-		GFF2849	0.77	-0.7
2,906,218	+		GFF2849	0.77	-0.5
2,906,238	+		GFF2849	0.79	-1.3
2,906,238	+		GFF2849	0.79	+0.3
2,906,242	+		GFF2849	0.79	+1.5
2,906,245	-		GFF2849	0.79	-0.2
2,906,245	-		GFF2849	0.79	+0.6
2,906,245	-		GFF2849	0.79	-0.4
2,906,245	-		GFF2849	0.79	+0.5
2,906,246	-		GFF2849	0.79	-1.2
2,906,258	-		GFF2849	0.80	-1.1
2,906,284	+		GFF2849	0.82	+0.5
2,906,284	+		GFF2849	0.82	-0.3
2,906,298	+		GFF2849	0.82	-0.2
2,906,298	+		GFF2849	0.82	+0.0
2,906,298	+		GFF2849	0.82	-0.2
2,906,298	+		GFF2849	0.82	+1.3
2,906,298	+		GFF2849	0.82	-0.7
2,906,298	+		GFF2849	0.82	-1.3
2,906,306	-		GFF2849	0.83	+2.0
2,906,306	-		GFF2849	0.83	+0.1
2,906,308	+		GFF2849	0.83	-0.8
2,906,308	+		GFF2849	0.83	-1.3
2,906,316	-		GFF2849	0.83	-0.7
2,906,327	-		GFF2849	0.84	+0.2
2,906,332	+		GFF2849	0.84	-0.8
2,906,337	+		GFF2849	0.85	-1.5
2,906,378	+		GFF2849	0.87	+0.2
2,906,403	+		GFF2849	0.89	-0.3
2,906,436	+				+0.9
2,906,436	+				-0.3
2,906,444	-				-1.4
2,906,444	-				-0.5
2,906,444	-				-0.2
2,906,444	-				+0.7
2,906,446	-				+0.6
2,906,457	+				-0.3
2,906,478	-				-1.1
2,906,481	-				-0.9
2,906,504	+				+1.0
2,906,509	+				-0.5
2,906,517	+				+0.2
2,906,522	+				-1.2
2,906,530	-				-0.8
2,906,530	-				+0.3
2,906,530	-				-1.2
2,906,530	-				-2.9
2,906,530	-				+0.7
2,906,551	-				-0.5
2,906,551	-				-0.3
2,906,556	-				+0.3
2,906,557	-				+1.0
2,906,562	-				-0.6
2,906,564	+				-0.7
2,906,564	+				+0.9
2,906,564	+				-0.5
2,906,564	+				-1.1
2,906,564	+				-1.4
2,906,571	+				-0.5
2,906,571	+				+0.8
2,906,572	-				-1.4
2,906,574	-				+0.3
2,906,578	-				-0.7
2,906,578	-				+1.0
2,906,578	-				+0.2
2,906,583	-				-2.7
2,906,588	-				-1.4
2,906,600	+				+1.0
2,906,607	+				+0.4
2,906,620	+				+0.2
2,906,620	+				-1.2
2,906,620	+				+0.5
2,906,620	+				+0.7
2,906,620	+				-0.5
2,906,620	+				-0.2
2,906,620	+				-0.4
2,906,620	+				+0.4
2,906,620	+				-1.1
2,906,625	+				+0.7
2,906,625	+				+0.1
2,906,625	+				+0.2
2,906,625	+				-1.2
2,906,625	+				-1.6
2,906,625	+				+0.4
2,906,625	+				+0.3
2,906,625	+				-0.3
2,906,625	+				-1.5
2,906,625	+				+0.3
2,906,625	+				-0.6
2,906,625	+				-0.7
2,906,628	-				-0.5
2,906,628	-				+0.6
2,906,628	-				-0.5
2,906,628	-				-0.2
2,906,628	-				-0.2
2,906,629	-				+0.7
2,906,633	-				-0.8
2,906,633	-				-1.4
2,906,633	-				-0.7
2,906,633	-				+0.0
2,906,633	-				+0.0
2,906,633	-				-1.2
2,906,633	-				-2.1
2,906,633	-				-1.6
2,906,633	-				+0.3
2,906,633	-				+0.1
2,906,633	-				-1.6
2,906,633	-				+1.0
2,906,633	-				+0.9
2,906,638	-		GFF2850	0.11	-0.3
2,906,663	+		GFF2850	0.15	+1.9
2,906,695	+		GFF2850	0.20	+0.0
2,906,703	-		GFF2850	0.21	-0.2
2,906,708	+		GFF2850	0.22	+0.7
2,906,735	-		GFF2850	0.26	-1.2
2,906,756	+		GFF2850	0.30	-0.3
2,906,770	+		GFF2850	0.32	-0.0
2,906,770	+		GFF2850	0.32	-1.3
2,906,770	+		GFF2850	0.32	+1.1
2,906,770	+		GFF2850	0.32	+0.9
2,906,770	-		GFF2850	0.32	+0.4
2,906,778	-		GFF2850	0.33	+0.9
2,906,778	-		GFF2850	0.33	-0.2
2,906,783	-		GFF2850	0.34	-0.1
2,906,801	+		GFF2850	0.37	+0.1
2,906,801	+		GFF2850	0.37	-1.5
2,906,809	-		GFF2850	0.39	-1.2
2,906,809	-		GFF2850	0.39	+0.2
2,906,849	-		GFF2850	0.45	-0.4
2,906,849	-		GFF2850	0.45	-0.2
2,906,849	-		GFF2850	0.45	+0.5
2,906,878	-		GFF2850	0.50	+0.1
2,906,880	+		GFF2850	0.50	+1.1
2,906,880	-		GFF2850	0.50	+0.6
2,906,880	-		GFF2850	0.50	-0.9
2,906,890	+		GFF2850	0.52	-1.2
2,906,898	-		GFF2850	0.53	+1.4
2,906,901	-		GFF2850	0.54	+0.4
2,906,913	+		GFF2850	0.56	-0.6
2,906,946	+		GFF2850	0.61	-0.5
2,906,958	-		GFF2850	0.63	-0.8
2,906,970	+		GFF2850	0.65	+1.4
2,906,970	+		GFF2850	0.65	-1.4
2,906,983	-		GFF2850	0.67	-0.8
2,906,995	+		GFF2850	0.69	+0.3
2,907,004	+		GFF2850	0.71	+0.2
2,907,004	+		GFF2850	0.71	-0.5
2,907,012	+		GFF2850	0.72	+0.8
2,907,012	+		GFF2850	0.72	-0.7
2,907,012	+		GFF2850	0.72	+0.3
2,907,012	+		GFF2850	0.72	+0.5
2,907,012	+		GFF2850	0.72	+1.4
2,907,012	+		GFF2850	0.72	-1.1
2,907,012	+		GFF2850	0.72	-0.1
2,907,012	+		GFF2850	0.72	+0.5
2,907,012	+		GFF2850	0.72	+0.9
2,907,020	-		GFF2850	0.73	-0.4
2,907,020	-		GFF2850	0.73	-1.3
2,907,020	-		GFF2850	0.73	+0.0
2,907,020	-		GFF2850	0.73	+1.4
2,907,020	-		GFF2850	0.73	+1.3
2,907,020	-		GFF2850	0.73	-0.8
2,907,020	-		GFF2850	0.73	-0.3
2,907,020	-		GFF2850	0.73	-2.0
2,907,020	-		GFF2850	0.73	-1.3
2,907,020	-		GFF2850	0.73	+1.0
2,907,022	+		GFF2850	0.74	-1.1
2,907,022	+		GFF2850	0.74	+0.6
2,907,022	+		GFF2850	0.74	-1.8
2,907,022	+		GFF2850	0.74	+1.1
2,907,022	+		GFF2850	0.74	-0.7
2,907,028	+		GFF2850	0.75	-1.6
2,907,028	-		GFF2850	0.75	-0.6
2,907,030	-		GFF2850	0.75	+0.2
2,907,030	-		GFF2850	0.75	-1.6
2,907,047	-		GFF2850	0.78	-1.6
2,907,055	+		GFF2850	0.79	+0.3
2,907,063	+		GFF2850	0.80	+0.7
2,907,063	+		GFF2850	0.80	-0.8
2,907,067	+		GFF2850	0.81	-0.7
2,907,071	-		GFF2850	0.82	-0.3
2,907,073	+		GFF2850	0.82	+1.8
2,907,073	+		GFF2850	0.82	-0.5
2,907,073	+		GFF2850	0.82	-0.7
2,907,073	+		GFF2850	0.82	-0.4
2,907,073	+		GFF2850	0.82	-1.4
2,907,073	+		GFF2850	0.82	-1.0
2,907,073	+		GFF2850	0.82	-2.3
2,907,073	+		GFF2850	0.82	+0.5
2,907,073	+		GFF2850	0.82	-0.1
2,907,073	+		GFF2850	0.82	+0.0
2,907,081	-		GFF2850	0.83	-0.5
2,907,081	-		GFF2850	0.83	-0.8
2,907,081	-		GFF2850	0.83	-0.7
2,907,081	-		GFF2850	0.83	+0.9
2,907,081	-		GFF2850	0.83	+0.3
2,907,081	-		GFF2850	0.83	-1.3
2,907,081	-		GFF2850	0.83	-0.2
2,907,081	-		GFF2850	0.83	+0.8
2,907,111	+		GFF2850	0.88	+0.3
2,907,111	+		GFF2850	0.88	+0.7
2,907,124	-				-0.9
2,907,128	-				-1.0
2,907,138	+				+0.0
2,907,138	+				-1.2
2,907,138	+				+0.9
2,907,138	+				+1.3
2,907,141	-				+0.9
2,907,141	-				-1.1
2,907,146	-				+0.1
2,907,146	-				-0.2
2,907,146	-				-2.3
2,907,146	-				-0.3
2,907,146	-				+0.5
2,907,186	+				-1.1
2,907,186	+				+0.0
2,907,186	+				-0.2
2,907,194	-				+0.7
2,907,194	-				-0.0
2,907,215	+				-0.2
2,907,215	+				-0.5
2,907,223	-				-1.1
2,907,223	-				-0.6
2,907,223	-				-2.1
2,907,243	+				-0.7
2,907,273	+				-1.5
2,907,276	-				-1.5
2,907,286	+				+1.7
2,907,299	+				-2.1
2,907,302	-				+1.9
2,907,305	+				+0.7
2,907,322	-		GFF2851	0.11	-1.2
2,907,363	+		GFF2851	0.15	+1.5
2,907,371	-		GFF2851	0.16	-1.8
2,907,371	-		GFF2851	0.16	-0.5
2,907,371	-		GFF2851	0.16	-0.7
2,907,407	+		GFF2851	0.20	-0.8
2,907,422	-		GFF2851	0.22	-0.3
2,907,422	-		GFF2851	0.22	-0.2
2,907,425	-		GFF2851	0.22	-0.0
2,907,427	+		GFF2851	0.23	+0.8
2,907,435	+		GFF2851	0.23	+0.5
2,907,444	+		GFF2851	0.24	-0.8
2,907,452	-		GFF2851	0.25	-1.7
2,907,457	-		GFF2851	0.26	-1.0
2,907,457	-		GFF2851	0.26	+0.3
2,907,457	-		GFF2851	0.26	-0.8
2,907,533	+		GFF2851	0.34	+1.1
2,907,540	+		GFF2851	0.35	-0.5
2,907,553	-		GFF2851	0.37	-1.3
2,907,562	+		GFF2851	0.38	+0.9
2,907,570	-		GFF2851	0.38	-0.9
2,907,582	-		GFF2851	0.40	+0.1
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2,907,613	+		GFF2851	0.43	-1.7
2,907,613	+		GFF2851	0.43	+0.5
2,907,613	+		GFF2851	0.43	-0.9
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2,907,613	+		GFF2851	0.43	-1.5
2,907,621	-		GFF2851	0.44	-1.8
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2,907,621	-		GFF2851	0.44	-2.0
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2,907,630	+		GFF2851	0.45	+0.4
2,907,631	+		GFF2851	0.45	-0.5
2,907,651	+		GFF2851	0.47	+1.1
2,907,667	+		GFF2851	0.49	-0.1
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2,907,704	+		GFF2851	0.53	-1.8
2,907,719	+		GFF2851	0.55	+0.2
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2,907,887	+		GFF2851	0.74	-1.7
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2,907,893	+		GFF2851	0.74	-0.0
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2,907,924	+		GFF2851	0.78	-1.7
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2,907,924	-		GFF2851	0.78	-1.9
2,907,932	+		GFF2851	0.79	-0.3
2,907,932	-		GFF2851	0.79	-2.1
2,907,932	-		GFF2851	0.79	-2.1
2,907,947	-		GFF2851	0.80	-0.4
2,908,033	+				-0.3
2,908,041	-				-2.0
2,908,049	+				-0.6
2,908,049	+				-0.1
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2,908,057	-				+0.5
2,908,057	-				-1.0
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2,908,084	-				-1.0
2,908,086	+				-0.2
2,908,086	+				-1.3
2,908,094	-				+0.4
2,908,094	-				-1.2
2,908,123	-				+0.9
2,908,179	-				-0.9