Strain Fitness in Sphingobium sp. HT1-2 around GFF2840

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,889,417	-		GFF2839	0.12	+0.3
2,889,417	-		GFF2839	0.12	-0.8
2,889,417	-		GFF2839	0.12	+0.4
2,889,428	+		GFF2839	0.13	+0.3
2,889,447	-		GFF2839	0.15	-0.7
2,889,449	+		GFF2839	0.15	+0.5
2,889,449	+		GFF2839	0.15	-0.5
2,889,451	+		GFF2839	0.15	+0.1
2,889,457	-		GFF2839	0.16	-1.5
2,889,471	+		GFF2839	0.17	-1.9
2,889,471	+		GFF2839	0.17	-0.3
2,889,488	+		GFF2839	0.18	+0.5
2,889,488	+		GFF2839	0.18	+0.4
2,889,488	+		GFF2839	0.18	+0.4
2,889,488	+		GFF2839	0.18	+0.3
2,889,488	+		GFF2839	0.18	-1.0
2,889,488	+		GFF2839	0.18	-0.7
2,889,488	+		GFF2839	0.18	+0.4
2,889,488	+		GFF2839	0.18	-1.8
2,889,488	+		GFF2839	0.18	-0.9
2,889,488	+		GFF2839	0.18	-1.1
2,889,488	+		GFF2839	0.18	+0.9
2,889,488	+		GFF2839	0.18	+0.1
2,889,496	-		GFF2839	0.19	-1.3
2,889,496	-		GFF2839	0.19	-2.1
2,889,496	-		GFF2839	0.19	-2.2
2,889,540	-		GFF2839	0.23	-2.0
2,889,572	-		GFF2839	0.26	+1.5
2,889,596	-		GFF2839	0.28	-0.5
2,889,598	+		GFF2839	0.28	+0.7
2,889,603	+		GFF2839	0.28	-0.4
2,889,606	-		GFF2839	0.29	+0.0
2,889,606	-		GFF2839	0.29	-1.3
2,889,606	-		GFF2839	0.29	+0.4
2,889,611	-		GFF2839	0.29	+0.4
2,889,611	-		GFF2839	0.29	-0.3
2,889,614	+		GFF2839	0.29	-1.3
2,889,616	-		GFF2839	0.30	-0.1
2,889,625	+		GFF2839	0.30	-2.4
2,889,633	-		GFF2839	0.31	+1.4
2,889,633	-		GFF2839	0.31	-0.4
2,889,655	+		GFF2839	0.33	-1.6
2,889,670	-		GFF2839	0.34	-0.9
2,889,672	+		GFF2839	0.35	-0.1
2,889,677	+		GFF2839	0.35	-1.9
2,889,681	-		GFF2839	0.35	+1.2
2,889,685	-		GFF2839	0.36	-0.1
2,889,692	+		GFF2839	0.36	-0.9
2,889,692	+		GFF2839	0.36	-0.5
2,889,692	+		GFF2839	0.36	-0.3
2,889,695	+		GFF2839	0.37	-2.1
2,889,700	+		GFF2839	0.37	+0.9
2,889,700	+		GFF2839	0.37	+0.5
2,889,700	-		GFF2839	0.37	-0.9
2,889,700	-		GFF2839	0.37	+1.2
2,889,703	-		GFF2839	0.37	-0.7
2,889,703	-		GFF2839	0.37	-1.4
2,889,705	-		GFF2839	0.38	+0.0
2,889,708	-		GFF2839	0.38	-0.1
2,889,710	-		GFF2839	0.38	-0.2
2,889,713	+		GFF2839	0.38	-1.4
2,889,713	-		GFF2839	0.38	-1.2
2,889,721	-		GFF2839	0.39	+1.0
2,889,727	+		GFF2839	0.39	+0.5
2,889,727	+		GFF2839	0.39	-1.1
2,889,733	+		GFF2839	0.40	-0.1
2,889,735	-		GFF2839	0.40	-3.1
2,889,735	-		GFF2839	0.40	+0.6
2,889,735	-		GFF2839	0.40	-0.4
2,889,735	-		GFF2839	0.40	-0.8
2,889,742	-		GFF2839	0.41	+0.8
2,889,751	-		GFF2839	0.42	-0.4
2,889,766	+		GFF2839	0.43	-2.7
2,889,797	+		GFF2839	0.46	-0.2
2,889,810	+		GFF2839	0.47	-0.3
2,889,810	+		GFF2839	0.47	+0.3
2,889,810	+		GFF2839	0.47	+0.8
2,889,810	+		GFF2839	0.47	+0.9
2,889,818	-		GFF2839	0.48	+0.3
2,889,818	-		GFF2839	0.48	+0.4
2,889,818	-		GFF2839	0.48	+1.0
2,889,818	-		GFF2839	0.48	-1.6
2,889,854	+		GFF2839	0.51	+0.1
2,889,861	-		GFF2839	0.51	-0.6
2,889,870	-		GFF2839	0.52	-0.2
2,889,870	-		GFF2839	0.52	-2.2
2,889,874	-		GFF2839	0.52	-0.1
2,889,874	-		GFF2839	0.52	-1.1
2,889,884	+		GFF2839	0.53	-1.2
2,889,884	+		GFF2839	0.53	-0.3
2,889,884	+		GFF2839	0.53	-0.8
2,889,886	+		GFF2839	0.54	-0.7
2,889,892	-		GFF2839	0.54	-0.1
2,889,892	-		GFF2839	0.54	-0.3
2,889,894	-		GFF2839	0.54	+0.4
2,889,901	+		GFF2839	0.55	+1.2
2,889,904	-		GFF2839	0.55	+0.1
2,889,907	+		GFF2839	0.55	+0.5
2,889,911	-		GFF2839	0.56	-2.2
2,889,920	+		GFF2839	0.57	-0.9
2,889,920	+		GFF2839	0.57	-1.7
2,889,920	+		GFF2839	0.57	+0.1
2,889,931	+		GFF2839	0.58	+0.1
2,889,931	+		GFF2839	0.58	-1.4
2,889,934	-		GFF2839	0.58	-0.6
2,889,945	+		GFF2839	0.59	+0.5
2,889,993	+		GFF2839	0.63	+0.8
2,889,993	+		GFF2839	0.63	-1.6
2,889,993	-		GFF2839	0.63	-1.1
2,889,998	+		GFF2839	0.63	+0.1
2,890,001	-		GFF2839	0.64	-1.4
2,890,001	-		GFF2839	0.64	-0.0
2,890,001	-		GFF2839	0.64	-1.1
2,890,006	-		GFF2839	0.64	-1.1
2,890,006	-		GFF2839	0.64	-0.3
2,890,011	+		GFF2839	0.65	-1.2
2,890,011	-		GFF2839	0.65	-0.7
2,890,021	+		GFF2839	0.66	-1.2
2,890,023	-		GFF2839	0.66	-0.6
2,890,028	-		GFF2839	0.66	-0.4
2,890,028	-		GFF2839	0.66	+0.7
2,890,053	-		GFF2839	0.68	-1.3
2,890,053	-		GFF2839	0.68	+0.6
2,890,095	+		GFF2839	0.72	-0.0
2,890,095	+		GFF2839	0.72	-1.2
2,890,097	-		GFF2839	0.72	+0.4
2,890,102	+		GFF2839	0.73	-0.1
2,890,110	-		GFF2839	0.73	-0.6
2,890,127	-		GFF2839	0.75	-0.4
2,890,168	+		GFF2839	0.79	+0.4
2,890,168	+		GFF2839	0.79	-1.0
2,890,168	+		GFF2839	0.79	-0.4
2,890,176	-		GFF2839	0.79	-0.7
2,890,248	+		GFF2839	0.86	-0.6
2,890,263	+		GFF2839	0.87	+0.5
2,890,263	-		GFF2839	0.87	+0.5
2,890,293	+		GFF2839	0.90	-1.1
2,890,301	-				-1.2
2,890,317	-				+0.3
2,890,318	+				+1.2
2,890,326	-				-0.9
2,890,328	+				+0.6
2,890,341	-				-1.3
2,890,343	+				-1.4
2,890,357	+				-1.1
2,890,357	+				-1.1
2,890,357	+				-0.3
2,890,365	-				+0.1
2,890,365	-				+0.0
2,890,365	-				-0.2
2,890,367	+				-0.7
2,890,367	+				-1.3
2,890,367	+				-0.4
2,890,413	+				-0.3
2,890,413	+				+0.2
2,890,421	-				-0.2
2,890,428	+				+0.6
2,890,446	-				-0.8
2,890,478	-				-1.1
2,890,483	+				+0.4
2,890,491	-				+0.9
2,890,491	-				-0.9
2,890,494	-				-0.3
2,890,499	-				+0.7
2,890,509	-				-1.2
2,890,519	-				+0.5
2,890,519	-				-0.1
2,890,523	+				-0.5
2,890,531	+				-0.6
2,890,533	+				-0.0
2,890,537	+				+0.2
2,890,545	+				-0.7
2,890,550	+				-1.2
2,890,563	+				+0.0
2,890,563	+				-1.6
2,890,571	-				-0.4
2,890,571	-				-1.1
2,890,590	-				-0.8
2,890,592	+				-0.1
2,890,592	+				-1.7
2,890,594	+				+1.5
2,890,597	+				-0.2
2,890,600	-				-1.5
2,890,600	-				+0.2
2,890,600	-				-0.3
2,890,605	-				+0.1
2,890,617	+				-0.9
2,890,617	+				-1.1
2,890,621	-				+1.0
2,890,624	+				-0.3
2,890,625	+				-0.2
2,890,704	-		GFF2840	0.11	-0.7
2,890,704	-		GFF2840	0.11	-0.1
2,890,704	-		GFF2840	0.11	-1.6
2,890,706	+		GFF2840	0.11	-1.4
2,890,711	+		GFF2840	0.11	+0.3
2,890,711	+		GFF2840	0.11	-0.7
2,890,711	+		GFF2840	0.11	-1.2
2,890,711	+		GFF2840	0.11	-0.3
2,890,711	+		GFF2840	0.11	+0.0
2,890,711	+		GFF2840	0.11	-2.3
2,890,711	+		GFF2840	0.11	+0.1
2,890,719	-		GFF2840	0.11	+0.5
2,890,719	-		GFF2840	0.11	-1.1
2,890,719	-		GFF2840	0.11	+0.5
2,890,719	-		GFF2840	0.11	+0.7
2,890,719	-		GFF2840	0.11	+1.8
2,890,719	-		GFF2840	0.11	-0.7
2,890,720	-		GFF2840	0.11	-1.0
2,890,738	+		GFF2840	0.12	-2.7
2,890,738	+		GFF2840	0.12	+0.3
2,890,759	+		GFF2840	0.13	-1.0
2,890,773	+		GFF2840	0.13	+0.8
2,890,840	+		GFF2840	0.15	-1.3
2,890,843	-		GFF2840	0.16	-1.1
2,890,845	+		GFF2840	0.16	+0.6
2,890,848	-		GFF2840	0.16	+0.9
2,890,870	+		GFF2840	0.17	+0.7
2,890,904	+		GFF2840	0.18	+0.1
2,890,904	-		GFF2840	0.18	-0.6
2,890,905	-		GFF2840	0.18	-0.0
2,890,986	-		GFF2840	0.21	+0.3
2,891,001	+		GFF2840	0.21	+0.6
2,891,011	+		GFF2840	0.22	-0.3
2,891,012	+		GFF2840	0.22	-0.9
2,891,012	+		GFF2840	0.22	-0.8
2,891,020	-		GFF2840	0.22	-1.4
2,891,020	-		GFF2840	0.22	+0.7
2,891,020	-		GFF2840	0.22	+1.3
2,891,020	-		GFF2840	0.22	-1.3
2,891,020	-		GFF2840	0.22	+1.0
2,891,023	-		GFF2840	0.22	-2.9
2,891,050	-		GFF2840	0.23	-0.9
2,891,101	+		GFF2840	0.25	-0.6
2,891,103	-		GFF2840	0.25	+0.4
2,891,108	-		GFF2840	0.25	+0.2
2,891,108	-		GFF2840	0.25	-0.7
2,891,110	+		GFF2840	0.25	-1.9
2,891,118	-		GFF2840	0.26	+0.3
2,891,122	+		GFF2840	0.26	-1.5
2,891,122	+		GFF2840	0.26	-0.3
2,891,122	+		GFF2840	0.26	+0.5
2,891,122	+		GFF2840	0.26	+0.3
2,891,122	+		GFF2840	0.26	-0.8
2,891,122	+		GFF2840	0.26	-1.7
2,891,122	+		GFF2840	0.26	+0.7
2,891,122	+		GFF2840	0.26	+1.0
2,891,124	+		GFF2840	0.26	-0.9
2,891,124	+		GFF2840	0.26	-1.5
2,891,124	+		GFF2840	0.26	-2.0
2,891,124	+		GFF2840	0.26	-0.5
2,891,124	+		GFF2840	0.26	+0.5
2,891,124	+		GFF2840	0.26	+0.3
2,891,125	-		GFF2840	0.26	-2.1
2,891,129	+		GFF2840	0.26	+0.0
2,891,130	-		GFF2840	0.26	-1.6
2,891,130	-		GFF2840	0.26	-0.7
2,891,130	-		GFF2840	0.26	+0.7
2,891,130	-		GFF2840	0.26	-0.4
2,891,132	-		GFF2840	0.26	-1.3
2,891,132	-		GFF2840	0.26	+1.0
2,891,137	-		GFF2840	0.26	-1.9
2,891,137	-		GFF2840	0.26	-0.2
2,891,182	-		GFF2840	0.28	-1.8
2,891,191	+		GFF2840	0.28	-0.8
2,891,202	+		GFF2840	0.29	-0.6
2,891,264	-		GFF2840	0.31	+0.0
2,891,264	-		GFF2840	0.31	+0.5
2,891,267	-		GFF2840	0.31	-1.7
2,891,295	+		GFF2840	0.32	+0.3
2,891,345	-		GFF2840	0.34	-0.9
2,891,366	-		GFF2840	0.35	-0.8
2,891,369	+		GFF2840	0.35	+0.0
2,891,369	+		GFF2840	0.35	-1.9
2,891,369	+		GFF2840	0.35	-0.9
2,891,369	+		GFF2840	0.35	-1.0
2,891,374	+		GFF2840	0.35	-0.5
2,891,377	-		GFF2840	0.35	-1.2
2,891,377	-		GFF2840	0.35	-0.6
2,891,379	+		GFF2840	0.35	-1.9
2,891,379	+		GFF2840	0.35	+0.1
2,891,379	+		GFF2840	0.35	-2.2
2,891,379	+		GFF2840	0.35	-3.2
2,891,379	+		GFF2840	0.35	-1.1
2,891,379	+		GFF2840	0.35	+0.3
2,891,379	+		GFF2840	0.35	-1.5
2,891,379	+		GFF2840	0.35	-2.5
2,891,387	-		GFF2840	0.35	-1.1
2,891,387	-		GFF2840	0.35	-2.2
2,891,387	-		GFF2840	0.35	+0.2
2,891,387	-		GFF2840	0.35	-2.4
2,891,387	-		GFF2840	0.35	+0.5
2,891,392	-		GFF2840	0.36	-2.2
2,891,400	-		GFF2840	0.36	-0.7
2,891,428	+		GFF2840	0.37	+0.9
2,891,447	+		GFF2840	0.38	-0.4
2,891,458	+		GFF2840	0.38	+0.4
2,891,466	-		GFF2840	0.38	+1.1
2,891,476	-		GFF2840	0.39	-2.2
2,891,493	-		GFF2840	0.39	-0.9
2,891,503	+		GFF2840	0.40	-2.6
2,891,503	+		GFF2840	0.40	-1.4
2,891,503	+		GFF2840	0.40	+0.3
2,891,503	+		GFF2840	0.40	-0.6
2,891,503	+		GFF2840	0.40	+0.1
2,891,503	+		GFF2840	0.40	+0.4
2,891,505	+		GFF2840	0.40	+0.9
2,891,505	+		GFF2840	0.40	-0.3
2,891,505	+		GFF2840	0.40	-2.6
2,891,505	+		GFF2840	0.40	-0.9
2,891,505	+		GFF2840	0.40	-0.2
2,891,506	-		GFF2840	0.40	+0.8
2,891,511	-		GFF2840	0.40	+0.3
2,891,511	-		GFF2840	0.40	+1.6
2,891,511	-		GFF2840	0.40	-0.1
2,891,513	-		GFF2840	0.40	-0.5
2,891,513	-		GFF2840	0.40	-1.7
2,891,513	-		GFF2840	0.40	-1.9
2,891,513	-		GFF2840	0.40	-0.4
2,891,513	-		GFF2840	0.40	+0.2
2,891,527	+		GFF2840	0.40	-0.8
2,891,535	-		GFF2840	0.41	-0.8
2,891,570	+		GFF2840	0.42	-1.1
2,891,633	+		GFF2840	0.44	-0.2
2,891,644	+		GFF2840	0.45	-1.3
2,891,647	-		GFF2840	0.45	+0.4
2,891,652	-		GFF2840	0.45	+0.7
2,891,652	-		GFF2840	0.45	+0.4
2,891,691	+		GFF2840	0.46	-0.6
2,891,691	+		GFF2840	0.46	-1.4
2,891,691	+		GFF2840	0.46	-1.1
2,891,691	+		GFF2840	0.46	-1.8
2,891,696	+		GFF2840	0.47	-2.0
2,891,699	-		GFF2840	0.47	+0.1
2,891,699	-		GFF2840	0.47	+0.8
2,891,699	-		GFF2840	0.47	-0.1
2,891,704	-		GFF2840	0.47	-1.2
2,891,704	-		GFF2840	0.47	+0.5
2,891,704	-		GFF2840	0.47	+0.1
2,891,704	-		GFF2840	0.47	+0.0
2,891,704	-		GFF2840	0.47	-1.7
2,891,704	-		GFF2840	0.47	+1.3
2,891,704	-		GFF2840	0.47	+0.8
2,891,704	-		GFF2840	0.47	-0.0
2,891,704	-		GFF2840	0.47	+0.1
2,891,704	-		GFF2840	0.47	+1.0
2,891,758	+		GFF2840	0.49	+0.8
2,891,768	+		GFF2840	0.49	+0.2
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2,891,907	-		GFF2840	0.54	-0.0
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2,892,094	-		GFF2840	0.61	-1.9
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2,892,167	-		GFF2840	0.64	-1.8
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2,892,204	-		GFF2840	0.65	-0.2
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2,892,228	+		GFF2840	0.66	+0.1
2,892,231	-		GFF2840	0.66	-0.6
2,892,246	+		GFF2840	0.67	+0.3
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2,892,308	+		GFF2840	0.69	+0.9
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2,892,310	-		GFF2840	0.69	-0.5
2,892,316	-		GFF2840	0.69	-1.5
2,892,317	-		GFF2840	0.69	+0.9
2,892,317	-		GFF2840	0.69	+0.5
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2,892,381	-		GFF2840	0.71	-0.5
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2,892,398	+		GFF2840	0.72	-0.0
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2,892,421	+		GFF2840	0.73	+0.4
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2,892,499	+		GFF2840	0.76	+0.6
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2,892,516	-		GFF2840	0.76	-0.7
2,892,538	-		GFF2840	0.77	+1.1
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2,892,557	+		GFF2840	0.78	-0.8
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2,892,560	-		GFF2840	0.78	-0.2
2,892,561	-		GFF2840	0.78	-0.3
2,892,565	-		GFF2840	0.78	-0.5
2,892,576	-		GFF2840	0.79	-1.1
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2,892,627	-		GFF2840	0.80	-1.1
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2,892,681	-		GFF2840	0.82	-0.8
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2,892,683	-		GFF2840	0.82	+0.3
2,892,683	-		GFF2840	0.82	-1.5
2,892,685	+		GFF2840	0.83	-1.7
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2,892,688	-		GFF2840	0.83	-0.2
2,892,688	-		GFF2840	0.83	-1.3
2,892,697	+		GFF2840	0.83	+0.9
2,892,698	-		GFF2840	0.83	-1.6
2,892,705	+		GFF2840	0.83	-1.9
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2,892,705	-		GFF2840	0.83	+0.2
2,892,713	-		GFF2840	0.84	+0.3
2,892,742	+		GFF2840	0.85	+0.1
2,892,742	+		GFF2840	0.85	-2.0
2,892,743	+		GFF2840	0.85	-1.2
2,892,744	-		GFF2840	0.85	-1.0
2,892,745	-		GFF2840	0.85	-1.8
2,892,750	-		GFF2840	0.85	+0.2
2,892,787	+		GFF2840	0.86	+0.7
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2,892,847	+		GFF2840	0.88	-1.2
2,892,855	-		GFF2840	0.89	-1.7
2,892,861	+		GFF2840	0.89	-0.4
2,892,869	-		GFF2840	0.89	-0.1
2,892,869	-		GFF2840	0.89	-0.1
2,892,938	+				+0.0
2,892,987	+				-1.1
2,892,995	-				+0.4
2,892,997	+				+0.3
2,892,997	+				-1.1
2,892,997	+				+0.3
2,893,000	-				+0.9
2,893,005	-				-0.3
2,893,006	+				+0.9
2,893,007	+				-0.7
2,893,009	-				-1.4
2,893,009	-				-0.2
2,893,020	+				+0.1
2,893,020	+				-0.2
2,893,028	-				-0.2
2,893,028	-				-0.2
2,893,028	-				+0.0
2,893,037	+				-1.5
2,893,055	+				+1.2
2,893,068	-				+0.1
2,893,077	+				-1.1
2,893,077	+				-0.2
2,893,153	-				+1.0
2,893,157	-				+0.3
2,893,163	-				-2.1
2,893,168	-				-0.6
2,893,170	-				-1.4
2,893,170	-				+0.1
2,893,181	+				-1.3
2,893,189	-				+0.6
2,893,189	-				+0.4
2,893,206	-				-0.8
2,893,232	-				-2.9
2,893,234	+				-0.7
2,893,234	+				+0.7
2,893,234	+				+0.3
2,893,240	+				-0.9
2,893,248	-				+1.1
2,893,258	-				+0.7
2,893,258	-				-0.3
2,893,258	-				-1.7
2,893,265	+				-0.6
2,893,265	+				-0.9
2,893,265	+				-0.2
2,893,265	+				-1.2
2,893,265	+				-2.2
2,893,265	+				-1.9
2,893,265	+				-0.7
2,893,265	+				-1.2
2,893,265	+				+1.1
2,893,265	+				-0.7
2,893,265	+				-1.7
2,893,265	+				-2.0
2,893,265	+				+1.4
2,893,265	+				-0.9
2,893,265	+				+0.6
2,893,265	+				-0.7
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2,893,273	-		GFF2841	0.10	-2.1
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2,893,273	-		GFF2841	0.10	-0.3
2,893,273	-		GFF2841	0.10	-1.2
2,893,273	-		GFF2841	0.10	-1.4
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2,893,273	-		GFF2841	0.10	-0.2
2,893,273	-		GFF2841	0.10	-1.3
2,893,273	-		GFF2841	0.10	-0.0
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2,893,375	-		GFF2841	0.20	-2.2
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2,893,394	+		GFF2841	0.21	-0.8
2,893,394	+		GFF2841	0.21	-2.1
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2,893,420	+		GFF2841	0.24	-0.1
2,893,420	+		GFF2841	0.24	-0.9
2,893,420	+		GFF2841	0.24	-0.7
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2,893,491	+		GFF2841	0.30	-0.4
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2,893,518	+		GFF2841	0.33	-0.7
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2,894,148	-				+1.2
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