Strain Fitness in Sphingobium sp. HT1-2 around GFF2813

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,853,591	+		GFF2811	0.25	+0.2
2,853,596	+		GFF2811	0.26	-0.5
2,853,606	+		GFF2811	0.29	-0.7
2,853,606	+		GFF2811	0.29	-0.2
2,853,606	+		GFF2811	0.29	-2.0
2,853,606	+		GFF2811	0.29	+0.5
2,853,606	+		GFF2811	0.29	-2.8
2,853,606	+		GFF2811	0.29	+0.4
2,853,606	+		GFF2811	0.29	-0.4
2,853,606	+		GFF2811	0.29	-0.3
2,853,606	+		GFF2811	0.29	+0.3
2,853,606	+		GFF2811	0.29	+1.3
2,853,606	+		GFF2811	0.29	+0.1
2,853,606	+		GFF2811	0.29	-0.3
2,853,606	+		GFF2811	0.29	-0.4
2,853,611	+		GFF2811	0.30	+0.6
2,853,611	+		GFF2811	0.30	-1.2
2,853,614	-		GFF2811	0.31	-2.0
2,853,614	-		GFF2811	0.31	-1.3
2,853,614	-		GFF2811	0.31	-0.5
2,853,614	-		GFF2811	0.31	+0.3
2,853,614	-		GFF2811	0.31	-0.0
2,853,614	-		GFF2811	0.31	-0.9
2,853,614	-		GFF2811	0.31	-0.2
2,853,614	-		GFF2811	0.31	-0.5
2,853,614	-		GFF2811	0.31	-0.1
2,853,614	-		GFF2811	0.31	+0.4
2,853,614	-		GFF2811	0.31	+0.7
2,853,614	-		GFF2811	0.31	-0.7
2,853,614	-		GFF2811	0.31	-0.2
2,853,614	-		GFF2811	0.31	+1.4
2,853,614	-		GFF2811	0.31	+0.3
2,853,614	-		GFF2811	0.31	-0.7
2,853,619	-		GFF2811	0.33	-0.9
2,853,619	-		GFF2811	0.33	+0.1
2,853,619	-		GFF2811	0.33	-1.4
2,853,619	-		GFF2811	0.33	-0.5
2,853,619	-		GFF2811	0.33	-1.2
2,853,659	+		GFF2811	0.44	+0.5
2,853,675	+		GFF2811	0.49	-1.6
2,853,675	+		GFF2811	0.49	-0.1
2,853,675	+		GFF2811	0.49	+1.0
2,853,675	+		GFF2811	0.49	-0.6
2,853,675	+		GFF2811	0.49	-1.2
2,853,679	+		GFF2811	0.50	-2.1
2,853,683	-		GFF2811	0.51	-0.9
2,853,683	-		GFF2811	0.51	-0.5
2,853,683	-		GFF2811	0.51	+0.2
2,853,683	-		GFF2811	0.51	+0.4
2,853,683	-		GFF2811	0.51	-0.0
2,853,683	-		GFF2811	0.51	+0.3
2,853,692	-		GFF2811	0.54	-1.9
2,853,692	-		GFF2811	0.54	-0.1
2,853,731	-		GFF2811	0.65	+0.1
2,853,738	+		GFF2811	0.67	+0.1
2,853,783	+		GFF2811	0.80	+1.3
2,853,824	-				-1.4
2,853,833	+				+0.5
2,853,838	+				+0.2
2,853,841	-				-0.4
2,853,848	+				+0.0
2,853,860	-				+0.0
2,853,870	-				-0.3
2,853,887	+				+0.5
2,853,892	+				+0.9
2,853,892	+				-1.1
2,853,892	+				-0.5
2,853,900	-				+0.7
2,853,938	-		GFF2812	0.12	-0.6
2,853,940	+		GFF2812	0.12	-2.3
2,853,940	+		GFF2812	0.12	-0.6
2,853,940	+		GFF2812	0.12	-1.7
2,853,940	+		GFF2812	0.12	+0.5
2,853,948	-		GFF2812	0.13	-2.0
2,853,948	-		GFF2812	0.13	-2.2
2,853,948	-		GFF2812	0.13	+0.4
2,853,958	-		GFF2812	0.15	-1.4
2,853,988	+		GFF2812	0.19	-0.7
2,853,993	+		GFF2812	0.19	-0.4
2,854,008	+		GFF2812	0.21	-1.1
2,854,013	+		GFF2812	0.22	-0.2
2,854,016	-		GFF2812	0.22	-1.2
2,854,021	-		GFF2812	0.23	+0.3
2,854,021	-		GFF2812	0.23	-1.6
2,854,026	-		GFF2812	0.24	-0.0
2,854,027	+		GFF2812	0.24	-0.9
2,854,042	+		GFF2812	0.26	+0.5
2,854,042	+		GFF2812	0.26	+1.1
2,854,043	-		GFF2812	0.26	+0.5
2,854,059	+		GFF2812	0.28	-0.9
2,854,060	-		GFF2812	0.28	-0.0
2,854,061	+		GFF2812	0.28	-0.0
2,854,062	-		GFF2812	0.28	+0.6
2,854,089	-		GFF2812	0.32	-0.8
2,854,109	+		GFF2812	0.35	+1.7
2,854,109	+		GFF2812	0.35	+0.3
2,854,109	+		GFF2812	0.35	+0.1
2,854,109	+		GFF2812	0.35	+0.2
2,854,109	+		GFF2812	0.35	+0.2
2,854,109	+		GFF2812	0.35	-2.3
2,854,109	+		GFF2812	0.35	+0.0
2,854,109	+		GFF2812	0.35	+0.5
2,854,114	+		GFF2812	0.35	-0.3
2,854,117	-		GFF2812	0.36	+0.1
2,854,118	-		GFF2812	0.36	-0.6
2,854,122	-		GFF2812	0.37	-1.4
2,854,131	-		GFF2812	0.38	+0.4
2,854,132	+		GFF2812	0.38	+0.4
2,854,167	-		GFF2812	0.43	+0.2
2,854,173	+		GFF2812	0.43	+0.5
2,854,173	+		GFF2812	0.43	+1.7
2,854,176	-		GFF2812	0.44	-0.9
2,854,190	+		GFF2812	0.46	-0.4
2,854,190	+		GFF2812	0.46	-2.1
2,854,195	+		GFF2812	0.46	-1.1
2,854,227	-		GFF2812	0.51	-1.8
2,854,227	-		GFF2812	0.51	-0.1
2,854,227	-		GFF2812	0.51	-1.2
2,854,229	+		GFF2812	0.51	+1.2
2,854,237	-		GFF2812	0.52	-0.2
2,854,243	+		GFF2812	0.53	-1.1
2,854,243	+		GFF2812	0.53	-0.0
2,854,253	+		GFF2812	0.54	+0.8
2,854,253	+		GFF2812	0.54	-0.7
2,854,253	+		GFF2812	0.54	+0.4
2,854,253	+		GFF2812	0.54	-0.6
2,854,253	+		GFF2812	0.54	-0.1
2,854,265	-		GFF2812	0.56	+0.3
2,854,268	+		GFF2812	0.56	-0.8
2,854,276	-		GFF2812	0.57	+0.5
2,854,276	-		GFF2812	0.57	-0.2
2,854,276	-		GFF2812	0.57	+1.0
2,854,276	-		GFF2812	0.57	+1.2
2,854,276	-		GFF2812	0.57	+0.2
2,854,276	-		GFF2812	0.57	+0.9
2,854,290	+		GFF2812	0.59	-0.7
2,854,291	+		GFF2812	0.59	-0.7
2,854,291	+		GFF2812	0.59	+0.2
2,854,299	-		GFF2812	0.60	+0.1
2,854,320	-		GFF2812	0.63	+1.5
2,854,320	-		GFF2812	0.63	+0.1
2,854,365	-		GFF2812	0.69	+0.4
2,854,397	+		GFF2812	0.74	-0.1
2,854,403	+		GFF2812	0.74	-0.1
2,854,403	-		GFF2812	0.74	-1.1
2,854,410	-		GFF2812	0.75	+1.5
2,854,411	-		GFF2812	0.75	+0.7
2,854,413	+		GFF2812	0.76	+0.8
2,854,413	+		GFF2812	0.76	-0.5
2,854,421	-		GFF2812	0.77	-1.8
2,854,422	-		GFF2812	0.77	-0.7
2,854,437	+		GFF2812	0.79	-1.7
2,854,445	-		GFF2812	0.80	-1.7
2,854,445	-		GFF2812	0.80	+0.1
2,854,445	-		GFF2812	0.80	-2.4
2,854,445	-		GFF2812	0.80	+0.5
2,854,455	+		GFF2812	0.81	-0.5
2,854,482	+		GFF2812	0.85	+0.1
2,854,504	+		GFF2812	0.88	+0.5
2,854,511	+		GFF2812	0.89	+0.2
2,854,511	+		GFF2812	0.89	+1.1
2,854,516	+		GFF2812	0.90	-0.2
2,854,519	-				-0.2
2,854,541	+				+0.2
2,854,549	-				-1.5
2,854,560	+				-0.0
2,854,581	+				-0.7
2,854,586	+				+1.0
2,854,586	+				+0.4
2,854,588	+				-1.9
2,854,594	-				+1.1
2,854,594	-				+0.1
2,854,608	+				+0.4
2,854,617	+				+1.3
2,854,676	+				-1.2
2,854,676	-				+0.2
2,854,676	-				-0.6
2,854,715	-		GFF2813	0.10	-1.4
2,854,738	+		GFF2813	0.12	-0.4
2,854,742	+		GFF2813	0.13	-1.7
2,854,750	-		GFF2813	0.13	-0.2
2,854,761	+		GFF2813	0.14	+1.0
2,854,777	+		GFF2813	0.16	+0.1
2,854,777	+		GFF2813	0.16	-1.9
2,854,785	-		GFF2813	0.16	+0.9
2,854,785	-		GFF2813	0.16	-1.1
2,854,879	+		GFF2813	0.24	-1.1
2,854,879	+		GFF2813	0.24	+0.0
2,854,879	+		GFF2813	0.24	-0.8
2,854,879	+		GFF2813	0.24	+1.8
2,854,879	+		GFF2813	0.24	-0.8
2,854,887	-		GFF2813	0.25	-0.3
2,854,887	-		GFF2813	0.25	+0.9
2,854,887	-		GFF2813	0.25	-1.1
2,854,887	-		GFF2813	0.25	-0.3
2,854,890	+		GFF2813	0.25	+0.3
2,854,898	-		GFF2813	0.26	-0.5
2,854,935	+		GFF2813	0.29	-1.2
2,854,981	+		GFF2813	0.33	+0.1
2,854,981	+		GFF2813	0.33	-0.4
2,854,989	-		GFF2813	0.33	-0.2
2,854,989	-		GFF2813	0.33	-1.9
2,854,989	-		GFF2813	0.33	+0.2
2,854,991	+		GFF2813	0.33	+0.4
2,854,991	+		GFF2813	0.33	-1.5
2,854,991	+		GFF2813	0.33	-0.8
2,854,991	+		GFF2813	0.33	-0.1
2,854,991	+		GFF2813	0.33	-1.1
2,854,991	+		GFF2813	0.33	-0.3
2,854,995	-		GFF2813	0.34	-1.7
2,854,999	-		GFF2813	0.34	-1.7
2,854,999	-		GFF2813	0.34	+0.9
2,854,999	-		GFF2813	0.34	-1.3
2,854,999	-		GFF2813	0.34	-1.0
2,854,999	-		GFF2813	0.34	-1.3
2,854,999	-		GFF2813	0.34	+0.8
2,855,009	+		GFF2813	0.35	-0.1
2,855,042	+		GFF2813	0.38	-0.4
2,855,042	+		GFF2813	0.38	-2.2
2,855,058	-		GFF2813	0.39	+1.0
2,855,090	+		GFF2813	0.42	-0.1
2,855,101	-		GFF2813	0.42	-0.0
2,855,110	+		GFF2813	0.43	-0.6
2,855,110	+		GFF2813	0.43	-0.7
2,855,115	+		GFF2813	0.44	+0.5
2,855,118	-		GFF2813	0.44	-0.9
2,855,118	-		GFF2813	0.44	+0.1
2,855,128	-		GFF2813	0.45	+0.5
2,855,128	-		GFF2813	0.45	-1.2
2,855,136	+		GFF2813	0.45	-0.4
2,855,136	+		GFF2813	0.45	-0.2
2,855,136	+		GFF2813	0.45	-1.2
2,855,138	-		GFF2813	0.46	-0.9
2,855,138	-		GFF2813	0.46	+0.2
2,855,138	-		GFF2813	0.46	+0.5
2,855,138	-		GFF2813	0.46	-0.0
2,855,144	+		GFF2813	0.46	+0.1
2,855,144	+		GFF2813	0.46	+0.5
2,855,144	-		GFF2813	0.46	+0.1
2,855,144	-		GFF2813	0.46	-0.8
2,855,146	+		GFF2813	0.46	-0.6
2,855,146	+		GFF2813	0.46	+0.3
2,855,154	-		GFF2813	0.47	+0.2
2,855,154	-		GFF2813	0.47	+0.3
2,855,154	-		GFF2813	0.47	+0.1
2,855,163	-		GFF2813	0.48	-0.5
2,855,175	+		GFF2813	0.49	-2.3
2,855,183	-		GFF2813	0.49	-0.2
2,855,183	-		GFF2813	0.49	+0.3
2,855,183	-		GFF2813	0.49	+0.3
2,855,183	-		GFF2813	0.49	+0.6
2,855,183	-		GFF2813	0.49	-0.6
2,855,183	-		GFF2813	0.49	-0.8
2,855,218	+		GFF2813	0.52	-0.6
2,855,218	+		GFF2813	0.52	-0.7
2,855,218	+		GFF2813	0.52	-0.9
2,855,218	+		GFF2813	0.52	-0.5
2,855,226	-		GFF2813	0.53	-0.8
2,855,226	-		GFF2813	0.53	+0.1
2,855,226	-		GFF2813	0.53	-0.3
2,855,228	+		GFF2813	0.53	-1.9
2,855,235	+		GFF2813	0.54	-1.4
2,855,241	-		GFF2813	0.54	-2.8
2,855,255	+		GFF2813	0.55	-2.0
2,855,255	+		GFF2813	0.55	-0.7
2,855,276	-		GFF2813	0.57	-0.9
2,855,299	-		GFF2813	0.59	-1.4
2,855,300	-		GFF2813	0.59	+0.0
2,855,333	-		GFF2813	0.62	-0.4
2,855,335	-		GFF2813	0.62	-0.9
2,855,338	-		GFF2813	0.62	+0.8
2,855,340	+		GFF2813	0.62	+0.7
2,855,342	-		GFF2813	0.63	-1.0
2,855,347	-		GFF2813	0.63	-0.8
2,855,348	-		GFF2813	0.63	-1.4
2,855,361	+		GFF2813	0.64	-0.5
2,855,372	+		GFF2813	0.65	+1.0
2,855,394	+		GFF2813	0.67	-2.1
2,855,403	-		GFF2813	0.68	+0.5
2,855,435	+		GFF2813	0.70	-0.5
2,855,443	-		GFF2813	0.71	+0.7
2,855,443	-		GFF2813	0.71	+0.9
2,855,443	-		GFF2813	0.71	+0.5
2,855,443	-		GFF2813	0.71	-0.3
2,855,443	-		GFF2813	0.71	+0.1
2,855,470	+		GFF2813	0.73	-0.2
2,855,585	-		GFF2813	0.83	+0.3
2,855,585	-		GFF2813	0.83	+1.0
2,855,591	+		GFF2813	0.83	-0.3
2,855,593	-		GFF2813	0.83	-2.0
2,855,593	-		GFF2813	0.83	-0.0
2,855,607	-		GFF2813	0.85	-0.1
2,855,608	+		GFF2813	0.85	-0.6
2,855,658	+		GFF2813	0.89	-0.3
2,855,666	+		GFF2813	0.89	-0.2
2,855,693	-				+0.7
2,855,716	+				-1.1
2,855,724	-				-1.6
2,855,743	+				+1.1
2,855,748	+				-1.3
2,855,754	+				+0.1
2,855,755	+				+0.3
2,855,763	-				+0.9
2,855,763	-				-0.9
2,855,763	-				-1.4
2,855,763	-				-2.3
2,855,764	-				-1.8
2,855,765	+				+0.9
2,855,765	+				-0.3
2,855,770	+				-0.6
2,855,773	-				-0.1
2,855,773	-				-2.3
2,855,775	-				-0.5
2,855,781	+				+1.0
2,855,781	+				-1.1
2,855,781	+				+0.2
2,855,781	+				+0.7
2,855,781	+				+1.0
2,855,781	+				-1.1
2,855,781	+				-0.6
2,855,781	+				-1.4
2,855,781	+				+0.2
2,855,781	+				-0.5
2,855,782	+				-0.2
2,855,783	-				-0.3
2,855,789	-				-1.4
2,855,789	-				+0.1
2,855,789	-				-1.5
2,855,789	-				-2.6
2,855,789	-				+0.7
2,855,789	-				+1.6
2,855,789	-				-2.0
2,855,789	-				-0.7
2,855,789	-				+0.5
2,855,789	-				+1.6
2,855,800	+				+1.5
2,855,800	+				-1.1
2,855,800	+				-0.9
2,855,800	+				+0.3
2,855,803	-				-1.1
2,855,804	-				-2.0
2,855,806	-				-0.3
2,855,808	-				+0.1
2,855,808	-				+0.3
2,855,808	-				+0.6
2,855,811	+				-1.3
2,855,815	+				-1.6
2,855,816	+				+0.1
2,855,849	+		GFF2814	0.19	+0.1
2,855,860	+		GFF2814	0.23	+0.0
2,855,871	+		GFF2814	0.27	-1.5
2,855,879	-		GFF2814	0.29	-1.6
2,855,883	-		GFF2814	0.30	-0.9
2,855,886	+		GFF2814	0.31	-0.1
2,855,895	-		GFF2814	0.34	-0.1
2,855,920	+		GFF2814	0.42	-0.1
2,855,930	-		GFF2814	0.46	-0.6
2,855,949	-		GFF2814	0.52	-1.0
2,855,980	-		GFF2814	0.62	+0.8
2,855,980	-		GFF2814	0.62	-0.5
2,855,980	-		GFF2814	0.62	-1.6
2,855,981	+		GFF2814	0.62	+0.5
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2,856,036	+		GFF2814	0.80	-0.8
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2,856,041	+		GFF2814	0.82	-1.4
2,856,041	+		GFF2814	0.82	+1.1
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2,856,041	+		GFF2814	0.82	-0.0
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2,856,049	-		GFF2814	0.84	-1.9
2,856,049	-		GFF2814	0.84	-1.3
2,856,049	-		GFF2814	0.84	-0.1
2,856,049	-		GFF2814	0.84	-2.2
2,856,049	-		GFF2814	0.84	-0.0
2,856,049	-		GFF2814	0.84	+0.0
2,856,049	-		GFF2814	0.84	-0.2
2,856,055	+		GFF2814	0.86	-0.1
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2,856,068	-				+0.2
2,856,083	-				-0.6
2,856,088	+				+1.0
2,856,092	+				-0.1
2,856,099	+				+0.2
2,856,099	+				-1.1
2,856,100	-				-1.4
2,856,107	-				-1.1
2,856,108	-				-0.3
2,856,119	+				-1.7
2,856,119	-				-0.3
2,856,123	+				-0.4
2,856,126	-				+0.1
2,856,127	-				-1.5
2,856,131	-				+0.3
2,856,156	-				-0.6
2,856,156	-				+1.1
2,856,156	-				-1.3
2,856,161	-				-0.3
2,856,165	+				+0.5
2,856,172	-				+0.5
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2,856,198	+		GFF2815	0.12	-1.5
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2,856,198	+		GFF2815	0.12	-1.7
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2,856,206	-		GFF2815	0.13	-1.9
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2,856,232	+		GFF2815	0.16	-0.6
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2,856,240	-		GFF2815	0.17	+1.0
2,856,240	-		GFF2815	0.17	-2.1
2,856,240	-		GFF2815	0.17	-1.5
2,856,240	-		GFF2815	0.17	-1.2
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2,856,240	-		GFF2815	0.17	-0.4
2,856,240	-		GFF2815	0.17	+0.0
2,856,240	-		GFF2815	0.17	-1.3
2,856,240	-		GFF2815	0.17	+1.1
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2,856,256	+		GFF2815	0.18	+0.1
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2,856,279	-		GFF2815	0.21	-2.6
2,856,303	+		GFF2815	0.23	-0.2
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2,856,310	+		GFF2815	0.24	-1.1
2,856,310	+		GFF2815	0.24	-0.3
2,856,310	+		GFF2815	0.24	-1.7
2,856,310	+		GFF2815	0.24	-0.8
2,856,310	+		GFF2815	0.24	-1.5
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2,856,318	-		GFF2815	0.25	-0.9
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2,856,318	-		GFF2815	0.25	-2.1
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2,856,347	+		GFF2815	0.28	-0.8
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2,856,356	+		GFF2815	0.29	-1.1
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2,856,393	+		GFF2815	0.33	-0.7
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2,856,402	+		GFF2815	0.34	-0.8
2,856,402	+		GFF2815	0.34	-2.6
2,856,402	+		GFF2815	0.34	+0.6
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2,856,439	-		GFF2815	0.38	-1.1
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2,856,458	+		GFF2815	0.40	-0.3
2,856,458	+		GFF2815	0.40	-1.1
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2,856,458	+		GFF2815	0.40	-0.1
2,856,458	+		GFF2815	0.40	+0.7
2,856,458	+		GFF2815	0.40	-1.8
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2,856,466	-		GFF2815	0.41	+1.1
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2,856,468	+		GFF2815	0.42	+1.3
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2,856,485	+		GFF2815	0.43	+0.2
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2,856,585	+		GFF2815	0.54	-0.2
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2,856,591	+		GFF2815	0.55	+1.4
2,856,633	+		GFF2815	0.60	-0.8
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2,856,665	-		GFF2815	0.63	-0.5
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2,856,669	+		GFF2815	0.64	+0.3
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2,856,681	+		GFF2815	0.65	-1.4
2,856,681	+		GFF2815	0.65	-0.8
2,856,681	+		GFF2815	0.65	-0.4
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2,856,729	+		GFF2815	0.70	-1.6
2,856,735	-		GFF2815	0.71	+0.2
2,856,744	-		GFF2815	0.72	+0.0
2,856,744	-		GFF2815	0.72	+0.6