Strain Fitness in Sphingobium sp. HT1-2 around GFF2774

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,804,965	+		GFF2772	0.80	+0.4
2,804,970	+		GFF2772	0.81	-0.2
2,804,978	-		GFF2772	0.83	-2.4
2,804,995	+		GFF2772	0.86	-0.6
2,805,003	-		GFF2772	0.87	-0.4
2,805,023	+				+1.2
2,805,031	-				+1.1
2,805,049	+				+0.3
2,805,057	-				-0.2
2,805,105	-				-1.7
2,805,174	-		GFF2773	0.17	-1.1
2,805,241	+		GFF2773	0.30	-1.2
2,805,247	-		GFF2773	0.32	-0.5
2,805,249	-		GFF2773	0.32	-0.7
2,805,249	-		GFF2773	0.32	-0.0
2,805,249	-		GFF2773	0.32	-0.7
2,805,249	-		GFF2773	0.32	-0.3
2,805,249	-		GFF2773	0.32	+1.8
2,805,249	-		GFF2773	0.32	-0.7
2,805,249	-		GFF2773	0.32	+1.0
2,805,249	-		GFF2773	0.32	-1.8
2,805,249	-		GFF2773	0.32	-0.4
2,805,249	-		GFF2773	0.32	-0.4
2,805,249	-		GFF2773	0.32	-0.3
2,805,249	-		GFF2773	0.32	-1.9
2,805,254	-		GFF2773	0.33	-0.6
2,805,254	-		GFF2773	0.33	+1.3
2,805,254	-		GFF2773	0.33	-1.6
2,805,300	+		GFF2773	0.42	-0.4
2,805,300	+		GFF2773	0.42	+0.2
2,805,300	+		GFF2773	0.42	-1.1
2,805,310	+		GFF2773	0.44	+0.7
2,805,310	+		GFF2773	0.44	-1.7
2,805,310	+		GFF2773	0.44	-1.5
2,805,310	+		GFF2773	0.44	-1.5
2,805,310	+		GFF2773	0.44	-0.4
2,805,310	+		GFF2773	0.44	-1.2
2,805,310	+		GFF2773	0.44	-1.2
2,805,310	+		GFF2773	0.44	-0.8
2,805,310	+		GFF2773	0.44	-0.9
2,805,310	+		GFF2773	0.44	-0.8
2,805,318	-		GFF2773	0.45	-0.1
2,805,318	-		GFF2773	0.45	+0.1
2,805,318	-		GFF2773	0.45	-1.4
2,805,318	-		GFF2773	0.45	+0.0
2,805,318	-		GFF2773	0.45	-1.3
2,805,323	-		GFF2773	0.46	-2.3
2,805,339	+		GFF2773	0.50	-0.6
2,805,339	+		GFF2773	0.50	-2.7
2,805,339	+		GFF2773	0.50	-1.0
2,805,339	+		GFF2773	0.50	-2.1
2,805,346	+		GFF2773	0.51	-0.1
2,805,354	-		GFF2773	0.52	-0.1
2,805,438	-		GFF2773	0.69	-2.3
2,805,453	-		GFF2773	0.72	-0.7
2,805,524	-		GFF2773	0.86	-2.6
2,805,592	+				-0.5
2,805,612	+				-1.8
2,805,612	+				-0.7
2,805,617	+				+0.3
2,805,637	+				+0.7
2,805,708	+				+1.7
2,805,723	+				+0.7
2,805,743	+				-0.8
2,805,743	+				-0.1
2,805,745	+				-1.4
2,805,749	+				-0.3
2,805,749	+				-0.4
2,805,749	+				-0.1
2,805,757	-				-0.1
2,805,773	+				+1.6
2,805,773	+				-0.0
2,805,773	+				-0.5
2,805,780	+				+1.0
2,805,819	+				+0.1
2,805,827	-				-0.8
2,805,993	+				-0.2
2,806,008	+				+0.6
2,806,012	+				+0.3
2,806,029	-				-0.3
2,806,031	+				-0.4
2,806,041	+				+0.4
2,806,081	+				+0.9
2,806,081	+				+0.6
2,806,081	+				+0.7
2,806,157	+		GFF2774	0.10	+0.6
2,806,198	+		GFF2774	0.12	-1.9
2,806,220	+		GFF2774	0.13	-0.8
2,806,220	+		GFF2774	0.13	+0.7
2,806,230	+		GFF2774	0.14	+1.0
2,806,242	+		GFF2774	0.14	+0.8
2,806,242	+		GFF2774	0.14	-0.0
2,806,244	-		GFF2774	0.14	+0.8
2,806,250	-		GFF2774	0.14	-1.1
2,806,250	-		GFF2774	0.14	+0.2
2,806,252	+		GFF2774	0.14	+0.7
2,806,263	+		GFF2774	0.15	-1.8
2,806,268	+		GFF2774	0.15	+0.9
2,806,314	+		GFF2774	0.17	-1.6
2,806,321	+		GFF2774	0.17	-0.6
2,806,338	-		GFF2774	0.18	-2.6
2,806,349	+		GFF2774	0.19	-1.3
2,806,354	+		GFF2774	0.19	-0.5
2,806,354	+		GFF2774	0.19	+1.1
2,806,354	+		GFF2774	0.19	+0.2
2,806,367	+		GFF2774	0.19	-0.1
2,806,375	-		GFF2774	0.20	+0.6
2,806,375	-		GFF2774	0.20	-0.4
2,806,375	-		GFF2774	0.20	-2.3
2,806,389	+		GFF2774	0.20	-1.2
2,806,390	-		GFF2774	0.20	-0.0
2,806,394	+		GFF2774	0.21	-0.3
2,806,394	+		GFF2774	0.21	-0.5
2,806,394	+		GFF2774	0.21	+0.8
2,806,395	-		GFF2774	0.21	+0.2
2,806,396	-		GFF2774	0.21	-0.9
2,806,402	-		GFF2774	0.21	+0.1
2,806,402	-		GFF2774	0.21	+1.0
2,806,402	-		GFF2774	0.21	+0.2
2,806,402	-		GFF2774	0.21	-0.0
2,806,402	-		GFF2774	0.21	-1.8
2,806,425	+		GFF2774	0.22	-0.3
2,806,425	+		GFF2774	0.22	-0.6
2,806,425	+		GFF2774	0.22	-0.1
2,806,425	+		GFF2774	0.22	-1.1
2,806,428	-		GFF2774	0.22	+1.4
2,806,433	-		GFF2774	0.22	-0.6
2,806,433	-		GFF2774	0.22	-0.2
2,806,433	-		GFF2774	0.22	-0.4
2,806,433	-		GFF2774	0.22	-0.6
2,806,433	-		GFF2774	0.22	-1.6
2,806,433	-		GFF2774	0.22	+0.5
2,806,433	-		GFF2774	0.22	+1.2
2,806,433	-		GFF2774	0.22	-0.2
2,806,433	-		GFF2774	0.22	-2.1
2,806,433	-		GFF2774	0.22	-1.2
2,806,438	+		GFF2774	0.22	+1.6
2,806,446	-		GFF2774	0.23	-0.2
2,806,451	+		GFF2774	0.23	-0.6
2,806,563	+		GFF2774	0.28	+0.1
2,806,578	+		GFF2774	0.28	-1.1
2,806,608	-		GFF2774	0.30	-0.7
2,806,618	+		GFF2774	0.30	-1.2
2,806,683	+		GFF2774	0.33	+0.7
2,806,683	+		GFF2774	0.33	+0.7
2,806,683	+		GFF2774	0.33	-0.7
2,806,683	+		GFF2774	0.33	+0.2
2,806,691	-		GFF2774	0.33	+0.9
2,806,691	-		GFF2774	0.33	-0.1
2,806,691	-		GFF2774	0.33	-1.3
2,806,691	-		GFF2774	0.33	+0.4
2,806,693	+		GFF2774	0.33	+0.3
2,806,696	-		GFF2774	0.34	+2.9
2,806,718	+		GFF2774	0.34	-1.5
2,806,723	+		GFF2774	0.35	+1.6
2,806,731	-		GFF2774	0.35	+0.3
2,806,766	+		GFF2774	0.37	+1.0
2,806,766	+		GFF2774	0.37	+0.1
2,806,769	-		GFF2774	0.37	+0.2
2,806,774	-		GFF2774	0.37	-0.5
2,806,774	-		GFF2774	0.37	-1.4
2,806,774	-		GFF2774	0.37	-0.6
2,806,774	-		GFF2774	0.37	+0.6
2,806,774	-		GFF2774	0.37	-1.0
2,806,774	-		GFF2774	0.37	+0.6
2,806,811	+		GFF2774	0.38	+1.4
2,806,811	+		GFF2774	0.38	-1.4
2,806,819	-		GFF2774	0.39	-0.2
2,806,819	-		GFF2774	0.39	+1.7
2,806,819	-		GFF2774	0.39	+0.3
2,806,821	+		GFF2774	0.39	-0.3
2,806,824	-		GFF2774	0.39	+0.3
2,806,829	-		GFF2774	0.39	+0.3
2,806,831	+		GFF2774	0.39	+1.0
2,806,839	+		GFF2774	0.40	-0.3
2,806,839	+		GFF2774	0.40	+0.8
2,806,863	-		GFF2774	0.41	-0.3
2,806,885	+		GFF2774	0.42	-0.1
2,806,885	+		GFF2774	0.42	+0.6
2,806,998	-		GFF2774	0.46	+1.3
2,807,022	+		GFF2774	0.47	+0.4
2,807,066	+		GFF2774	0.49	-0.0
2,807,066	+		GFF2774	0.49	-0.2
2,807,074	-		GFF2774	0.50	+0.2
2,807,074	-		GFF2774	0.50	-0.3
2,807,081	-		GFF2774	0.50	+0.4
2,807,092	+		GFF2774	0.50	+0.4
2,807,102	+		GFF2774	0.51	-0.8
2,807,110	+		GFF2774	0.51	+0.7
2,807,134	-		GFF2774	0.52	-1.4
2,807,148	+		GFF2774	0.53	-0.0
2,807,162	-		GFF2774	0.53	+0.0
2,807,164	+		GFF2774	0.54	-1.5
2,807,179	+		GFF2774	0.54	-0.8
2,807,181	+		GFF2774	0.54	+1.3
2,807,181	+		GFF2774	0.54	-0.2
2,807,187	-		GFF2774	0.55	-0.0
2,807,189	-		GFF2774	0.55	-1.8
2,807,189	-		GFF2774	0.55	-1.5
2,807,231	+		GFF2774	0.56	+0.1
2,807,239	-		GFF2774	0.57	-0.8
2,807,239	-		GFF2774	0.57	-0.7
2,807,239	-		GFF2774	0.57	-0.7
2,807,254	-		GFF2774	0.57	-1.8
2,807,278	+		GFF2774	0.58	-0.2
2,807,283	+		GFF2774	0.59	-0.3
2,807,283	+		GFF2774	0.59	+0.1
2,807,286	-		GFF2774	0.59	+0.4
2,807,286	-		GFF2774	0.59	-0.5
2,807,288	+		GFF2774	0.59	+0.2
2,807,298	+		GFF2774	0.59	+0.2
2,807,298	+		GFF2774	0.59	-1.9
2,807,303	+		GFF2774	0.60	-2.5
2,807,303	+		GFF2774	0.60	-0.2
2,807,306	-		GFF2774	0.60	+1.6
2,807,318	+		GFF2774	0.60	-1.8
2,807,326	-		GFF2774	0.60	+0.7
2,807,326	-		GFF2774	0.60	+0.9
2,807,339	+		GFF2774	0.61	-0.1
2,807,339	+		GFF2774	0.61	+0.5
2,807,346	+		GFF2774	0.61	-2.1
2,807,346	+		GFF2774	0.61	+1.1
2,807,347	-		GFF2774	0.61	+1.1
2,807,356	+		GFF2774	0.62	-0.3
2,807,356	+		GFF2774	0.62	+0.6
2,807,356	+		GFF2774	0.62	-2.0
2,807,369	+		GFF2774	0.62	-0.4
2,807,373	-		GFF2774	0.63	-2.7
2,807,377	-		GFF2774	0.63	+0.3
2,807,397	+		GFF2774	0.64	+0.6
2,807,397	+		GFF2774	0.64	+1.4
2,807,397	+		GFF2774	0.64	+0.0
2,807,405	-		GFF2774	0.64	+1.1
2,807,405	-		GFF2774	0.64	+0.2
2,807,405	-		GFF2774	0.64	-0.2
2,807,405	-		GFF2774	0.64	-0.3
2,807,405	-		GFF2774	0.64	-0.8
2,807,407	+		GFF2774	0.64	-0.8
2,807,412	+		GFF2774	0.64	+0.4
2,807,412	+		GFF2774	0.64	+0.1
2,807,412	+		GFF2774	0.64	-0.8
2,807,412	+		GFF2774	0.64	+0.6
2,807,412	+		GFF2774	0.64	+0.3
2,807,412	+		GFF2774	0.64	+0.9
2,807,415	-		GFF2774	0.64	+1.0
2,807,419	+		GFF2774	0.64	+0.4
2,807,420	-		GFF2774	0.65	+2.1
2,807,420	-		GFF2774	0.65	+0.0
2,807,420	-		GFF2774	0.65	+1.0
2,807,465	+		GFF2774	0.66	-0.5
2,807,465	+		GFF2774	0.66	+1.1
2,807,465	+		GFF2774	0.66	-0.7
2,807,465	+		GFF2774	0.66	+0.8
2,807,465	+		GFF2774	0.66	-0.2
2,807,473	-		GFF2774	0.67	+1.2
2,807,473	-		GFF2774	0.67	-1.1
2,807,473	-		GFF2774	0.67	+1.2
2,807,482	+		GFF2774	0.67	+0.6
2,807,527	+		GFF2774	0.69	-0.1
2,807,535	-		GFF2774	0.69	+0.6
2,807,543	+		GFF2774	0.70	-0.2
2,807,546	-		GFF2774	0.70	-0.9
2,807,575	-		GFF2774	0.71	-0.0
2,807,590	-		GFF2774	0.72	-0.8
2,807,640	-		GFF2774	0.74	+0.5
2,807,743	+		GFF2774	0.78	-1.6
2,807,790	+		GFF2774	0.80	+0.4
2,807,798	-		GFF2774	0.81	-2.6
2,807,810	+		GFF2774	0.81	-0.3
2,807,825	+		GFF2774	0.82	+0.3
2,807,834	-		GFF2774	0.82	-0.8
2,807,834	-		GFF2774	0.82	-1.2
2,807,878	+		GFF2774	0.84	-1.6
2,807,928	+		GFF2774	0.86	+0.2
2,807,941	-		GFF2774	0.87	-0.7
2,807,941	-		GFF2774	0.87	-0.7
2,807,941	-		GFF2774	0.87	+1.8
2,807,982	+		GFF2774	0.89	-0.2
2,807,997	+		GFF2774	0.89	-1.8
2,807,997	+		GFF2774	0.89	+1.1
2,807,997	+		GFF2774	0.89	-1.5
2,808,005	-		GFF2774	0.90	+0.1
2,808,034	+				+0.9
2,808,056	-				+1.8
2,808,056	-				+1.5
2,808,058	+				-1.1
2,808,058	+				-0.0
2,808,058	+				+0.2
2,808,058	+				-0.4
2,808,058	+				+0.2
2,808,058	+				+0.4
2,808,058	+				+1.6
2,808,059	+				+1.7
2,808,066	-				-0.2
2,808,066	-				+1.4
2,808,066	-				-0.7
2,808,066	-				-0.2
2,808,066	-				+0.4
2,808,131	-				+0.5
2,808,136	-				+0.7
2,808,136	-				+1.8
2,808,154	+				+0.1
2,808,165	+				+0.3
2,808,165	+				-1.2
2,808,173	-				+2.1
2,808,173	-				-0.9
2,808,173	-				-0.0
2,808,173	-				+0.6
2,808,188	-				+0.8
2,808,188	-				+1.0
2,808,188	-				+0.1
2,808,200	-				+0.5
2,808,212	+				+0.9
2,808,212	+				-1.9
2,808,212	+				+0.2
2,808,212	+				+0.2
2,808,212	+				-2.6
2,808,212	+				-0.4
2,808,215	-				+0.9
2,808,220	-				+0.2
2,808,220	-				-0.5
2,808,220	-				-2.9
2,808,220	-				-1.0
2,808,220	-				-1.3
2,808,220	-				+0.4
2,808,220	-				+1.6
2,808,220	-				-2.4
2,808,220	-				-0.0
2,808,235	-				-0.8
2,808,239	+				+0.4
2,808,247	-				+1.4
2,808,252	-				+1.1
2,808,253	+				+0.5
2,808,256	-				-0.4
2,808,257	-				-0.2
2,808,257	-				-1.2
2,808,278	+				-1.0
2,808,286	-				-1.9
2,808,286	-				-0.6
2,808,304	+				-1.1
2,808,304	+				-1.7
2,808,311	+				-1.6
2,808,312	-				+0.8
2,808,337	+				-0.5
2,808,407	-				+0.1
2,808,407	-				+0.0
2,808,413	-				-1.0
2,808,417	+				+0.6
2,808,422	+				+0.8
2,808,462	+				+0.7
2,808,477	+				+0.1
2,808,477	+				+0.4
2,808,477	+				-0.2
2,808,477	+				-1.1
2,808,477	+				-1.1
2,808,480	-				+1.6
2,808,485	-				-0.6
2,808,485	-				-1.5
2,808,485	-				-1.2
2,808,487	+				-1.2
2,808,487	+				+1.2
2,808,487	+				-1.3
2,808,498	+				+0.7
2,808,544	-		GFF2775	0.11	-1.9
2,808,550	+		GFF2775	0.11	+0.2
2,808,550	+		GFF2775	0.11	-0.9
2,808,558	-		GFF2775	0.12	+1.7
2,808,563	+		GFF2775	0.12	-0.7
2,808,563	+		GFF2775	0.12	-0.6
2,808,571	-		GFF2775	0.12	-0.3
2,808,583	+		GFF2775	0.13	+0.2
2,808,586	+		GFF2775	0.13	-0.4
2,808,602	+		GFF2775	0.14	-0.6
2,808,625	-		GFF2775	0.15	+0.6
2,808,631	-		GFF2775	0.15	+0.4
2,808,632	-		GFF2775	0.15	-1.6
2,808,633	-		GFF2775	0.15	-0.3
2,808,642	+		GFF2775	0.16	-2.0
2,808,659	-		GFF2775	0.17	-0.2
2,808,698	-		GFF2775	0.19	-0.4
2,808,854	+		GFF2775	0.27	-0.2
2,808,862	-		GFF2775	0.27	-1.5
2,808,862	-		GFF2775	0.27	-1.2
2,808,864	+		GFF2775	0.27	-0.5
2,808,864	+		GFF2775	0.27	+0.2
2,808,864	+		GFF2775	0.27	-1.4
2,808,864	+		GFF2775	0.27	+0.2
2,808,864	+		GFF2775	0.27	-0.2
2,808,879	+		GFF2775	0.28	-0.4
2,808,879	+		GFF2775	0.28	-1.3
2,808,879	+		GFF2775	0.28	-0.1
2,808,879	+		GFF2775	0.28	+1.8
2,808,879	+		GFF2775	0.28	+1.6
2,808,879	+		GFF2775	0.28	-1.0
2,808,879	+		GFF2775	0.28	-0.9
2,808,879	+		GFF2775	0.28	+0.8
2,808,879	+		GFF2775	0.28	+0.7
2,808,879	+		GFF2775	0.28	+2.8
2,808,879	+		GFF2775	0.28	-0.7
2,808,879	+		GFF2775	0.28	+1.3
2,808,879	+		GFF2775	0.28	-0.6
2,808,879	+		GFF2775	0.28	-0.2
2,808,879	+		GFF2775	0.28	-1.3
2,808,887	-		GFF2775	0.28	-0.0
2,808,887	-		GFF2775	0.28	+0.3
2,808,887	-		GFF2775	0.28	-1.5
2,808,887	-		GFF2775	0.28	+1.0
2,808,887	-		GFF2775	0.28	+0.1
2,808,887	-		GFF2775	0.28	+0.6
2,808,887	-		GFF2775	0.28	-0.9
2,808,887	-		GFF2775	0.28	-0.4
2,808,887	-		GFF2775	0.28	-1.3
2,808,887	-		GFF2775	0.28	+0.8
2,808,887	-		GFF2775	0.28	+0.3
2,808,905	+		GFF2775	0.29	-1.0
2,808,928	-		GFF2775	0.30	-0.0
2,808,928	-		GFF2775	0.30	+0.1
2,808,928	-		GFF2775	0.30	-1.2
2,808,928	-		GFF2775	0.30	+2.1
2,808,928	-		GFF2775	0.30	+0.6
2,808,928	-		GFF2775	0.30	-2.2
2,808,963	-		GFF2775	0.32	+1.3
2,808,998	-		GFF2775	0.34	-0.0
2,808,998	-		GFF2775	0.34	-2.0
2,808,998	-		GFF2775	0.34	-0.9
2,809,005	-		GFF2775	0.34	+0.2
2,809,005	-		GFF2775	0.34	+0.2
2,809,005	-		GFF2775	0.34	-0.7
2,809,048	+		GFF2775	0.37	-0.4
2,809,101	-		GFF2775	0.39	+0.0
2,809,126	+		GFF2775	0.41	-0.9
2,809,161	+		GFF2775	0.42	+0.7
2,809,190	+		GFF2775	0.44	-0.5
2,809,191	+		GFF2775	0.44	-0.6
2,809,191	+		GFF2775	0.44	+0.4
2,809,191	+		GFF2775	0.44	+1.0
2,809,196	-		GFF2775	0.44	-1.8
2,809,199	-		GFF2775	0.44	+0.1
2,809,199	-		GFF2775	0.44	+1.3
2,809,233	+		GFF2775	0.46	+0.2
2,809,233	+		GFF2775	0.46	-0.4
2,809,233	+		GFF2775	0.46	+0.8
2,809,233	+		GFF2775	0.46	-1.9