Strain Fitness in Sphingobium sp. HT1-2 around GFF277

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF275 and GFF276 are separated by 68 nucleotidesGFF276 and GFF277 are separated by 4 nucleotidesGFF277 and GFF278 overlap by 1 nucleotidesGFF278 and GFF279 overlap by 11 nucleotidesGFF279 and GFF280 overlap by 4 nucleotides GFF275 - hypothetical protein, at 271,283 to 272,290 GFF275 GFF276 - hypothetical protein, at 272,359 to 272,943 GFF276 GFF277 - hypothetical protein, at 272,948 to 273,352 GFF277 GFF278 - hypothetical protein, at 273,352 to 273,663 GFF278 GFF279 - hypothetical protein, at 273,653 to 273,994 GFF279 GFF280 - hypothetical protein, at 273,991 to 274,344 GFF280 Position (kb) 272 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 271.961 kb on + strand, within GFF275at 271.966 kb on - strand, within GFF275at 271.974 kb on + strand, within GFF275at 271.974 kb on + strand, within GFF275at 271.977 kb on - strand, within GFF275at 271.989 kb on + strand, within GFF275at 271.996 kb on + strand, within GFF275at 271.996 kb on + strand, within GFF275at 272.004 kb on - strand, within GFF275at 272.013 kb on - strand, within GFF275at 272.051 kb on + strand, within GFF275at 272.051 kb on + strand, within GFF275at 272.051 kb on + strand, within GFF275at 272.059 kb on - strand, within GFF275at 272.059 kb on - strand, within GFF275at 272.059 kb on - strand, within GFF275at 272.059 kb on - strand, within GFF275at 272.062 kb on - strand, within GFF275at 272.062 kb on - strand, within GFF275at 272.092 kb on - strand, within GFF275at 272.127 kb on + strand, within GFF275at 272.127 kb on + strand, within GFF275at 272.135 kb on - strand, within GFF275at 272.143 kb on + strand, within GFF275at 272.143 kb on + strand, within GFF275at 272.143 kb on + strand, within GFF275at 272.156 kb on + strand, within GFF275at 272.156 kb on + strand, within GFF275at 272.174 kb on + strand, within GFF275at 272.176 kb on + strand, within GFF275at 272.191 kb on - strandat 272.207 kb on + strandat 272.212 kb on + strandat 272.214 kb on - strandat 272.220 kb on - strandat 272.220 kb on - strandat 272.220 kb on - strandat 272.220 kb on - strandat 272.469 kb on - strand, within GFF276at 272.477 kb on - strand, within GFF276at 272.566 kb on + strand, within GFF276at 272.566 kb on + strand, within GFF276at 272.569 kb on + strand, within GFF276at 272.582 kb on + strand, within GFF276at 272.582 kb on + strand, within GFF276at 272.584 kb on + strand, within GFF276at 272.590 kb on - strand, within GFF276at 272.590 kb on - strand, within GFF276at 272.661 kb on + strand, within GFF276at 272.661 kb on - strand, within GFF276at 272.661 kb on - strand, within GFF276at 272.674 kb on - strand, within GFF276at 272.674 kb on - strand, within GFF276at 272.719 kb on - strand, within GFF276at 272.754 kb on + strand, within GFF276at 272.762 kb on - strand, within GFF276at 272.762 kb on - strand, within GFF276at 272.764 kb on - strand, within GFF276at 272.886 kb on - strandat 272.909 kb on - strandat 272.909 kb on - strandat 272.909 kb on - strandat 272.953 kb on + strandat 272.996 kb on - strand, within GFF277at 273.057 kb on + strand, within GFF277at 273.065 kb on - strand, within GFF277at 273.065 kb on - strand, within GFF277at 273.113 kb on - strand, within GFF277at 273.137 kb on - strand, within GFF277at 273.137 kb on - strand, within GFF277at 273.184 kb on + strand, within GFF277at 273.212 kb on - strand, within GFF277at 273.255 kb on + strand, within GFF277at 273.263 kb on - strand, within GFF277at 273.298 kb on + strand, within GFF277at 273.298 kb on + strand, within GFF277at 273.305 kb on + strand, within GFF277at 273.322 kb on + strandat 273.333 kb on + strandat 273.342 kb on - strandat 273.372 kb on + strandat 273.372 kb on + strandat 273.380 kb on - strandat 273.407 kb on + strand, within GFF278at 273.445 kb on - strand, within GFF278at 273.459 kb on - strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.466 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.488 kb on + strand, within GFF278at 273.496 kb on - strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.505 kb on - strand, within GFF278at 273.536 kb on - strand, within GFF278at 273.568 kb on + strand, within GFF278at 273.575 kb on - strand, within GFF278at 273.576 kb on - strand, within GFF278at 273.591 kb on - strand, within GFF278at 273.608 kb on + strand, within GFF278at 273.608 kb on - strand, within GFF278at 273.616 kb on - strand, within GFF278at 273.634 kb on - strandat 273.641 kb on + strandat 273.642 kb on - strandat 273.649 kb on - strandat 273.651 kb on - strandat 273.659 kb on + strandat 273.659 kb on + strandat 273.659 kb on - strandat 273.708 kb on + strand, within GFF279at 273.722 kb on + strand, within GFF279at 273.722 kb on + strand, within GFF279at 273.728 kb on - strand, within GFF279at 273.730 kb on - strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.744 kb on + strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.765 kb on - strand, within GFF279at 273.770 kb on + strand, within GFF279at 273.771 kb on - strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.823 kb on - strand, within GFF279at 273.838 kb on - strand, within GFF279at 273.846 kb on - strand, within GFF279at 273.858 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.935 kb on - strand, within GFF279at 273.937 kb on + strand, within GFF279at 273.943 kb on + strand, within GFF279at 273.966 kb on - strandat 273.983 kb on - strandat 273.985 kb on + strandat 273.990 kb on + strandat 273.995 kb on + strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.004 kb on + strandat 274.009 kb on + strandat 274.017 kb on + strandat 274.019 kb on + strandat 274.025 kb on - strandat 274.025 kb on - strandat 274.027 kb on - strand, within GFF280at 274.029 kb on + strand, within GFF280at 274.029 kb on + strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.061 kb on + strand, within GFF280at 274.061 kb on + strand, within GFF280at 274.069 kb on - strand, within GFF280at 274.105 kb on + strand, within GFF280at 274.105 kb on + strand, within GFF280at 274.126 kb on - strand, within GFF280at 274.128 kb on + strand, within GFF280at 274.291 kb on + strand, within GFF280at 274.317 kb on - strandat 274.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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271,961 + GFF275 0.67 +0.8
271,966 - GFF275 0.68 -1.8
271,974 + GFF275 0.69 -0.4
271,974 + GFF275 0.69 -0.6
271,977 - GFF275 0.69 -0.5
271,989 + GFF275 0.70 +1.2
271,996 + GFF275 0.71 -0.5
271,996 + GFF275 0.71 +0.1
272,004 - GFF275 0.72 -0.7
272,013 - GFF275 0.72 -1.7
272,051 + GFF275 0.76 -0.5
272,051 + GFF275 0.76 +1.0
272,051 + GFF275 0.76 -0.8
272,059 - GFF275 0.77 -0.8
272,059 - GFF275 0.77 +1.3
272,059 - GFF275 0.77 +0.3
272,059 - GFF275 0.77 +1.8
272,062 - GFF275 0.77 -0.7
272,062 - GFF275 0.77 +0.3
272,092 - GFF275 0.80 +0.3
272,127 + GFF275 0.84 -1.0
272,127 + GFF275 0.84 +1.5
272,135 - GFF275 0.85 +1.5
272,143 + GFF275 0.85 -0.9
272,143 + GFF275 0.85 -2.2
272,143 + GFF275 0.85 -0.2
272,156 + GFF275 0.87 -0.9
272,156 + GFF275 0.87 -0.3
272,174 + GFF275 0.88 +1.1
272,176 + GFF275 0.89 +1.4
272,191 - +0.1
272,207 + -0.1
272,212 + -0.7
272,214 - +1.0
272,220 - -2.5
272,220 - +0.4
272,220 - -0.9
272,220 - -1.0
272,469 - GFF276 0.19 +0.0
272,477 - GFF276 0.20 -1.2
272,566 + GFF276 0.35 -1.0
272,566 + GFF276 0.35 -1.0
272,569 + GFF276 0.36 -0.5
272,582 + GFF276 0.38 -1.6
272,582 + GFF276 0.38 -0.5
272,584 + GFF276 0.38 -0.8
272,590 - GFF276 0.39 -0.9
272,590 - GFF276 0.39 -0.0
272,661 + GFF276 0.52 -1.5
272,661 - GFF276 0.52 +0.6
272,661 - GFF276 0.52 +0.1
272,674 - GFF276 0.54 +0.0
272,674 - GFF276 0.54 -0.3
272,719 - GFF276 0.62 -1.5
272,754 + GFF276 0.68 +0.8
272,762 - GFF276 0.69 +0.1
272,762 - GFF276 0.69 -1.0
272,764 - GFF276 0.69 -0.8
272,886 - +0.4
272,909 - -0.4
272,909 - +0.0
272,909 - -0.8
272,953 + -1.0
272,996 - GFF277 0.12 +0.0
273,057 + GFF277 0.27 -2.3
273,065 - GFF277 0.29 -0.3
273,065 - GFF277 0.29 -2.8
273,113 - GFF277 0.41 -1.0
273,137 - GFF277 0.47 -0.2
273,137 - GFF277 0.47 -0.6
273,184 + GFF277 0.58 -0.0
273,212 - GFF277 0.65 -2.2
273,255 + GFF277 0.76 +0.5
273,263 - GFF277 0.78 +0.5
273,298 + GFF277 0.86 -0.7
273,298 + GFF277 0.86 -2.0
273,305 + GFF277 0.88 +0.1
273,322 + -0.2
273,333 + -1.2
273,342 - +0.2
273,372 + -1.2
273,372 + -0.5
273,380 - -1.0
273,407 + GFF278 0.18 -0.0
273,445 - GFF278 0.30 +1.9
273,459 - GFF278 0.34 +0.3
273,460 + GFF278 0.35 +0.2
273,460 + GFF278 0.35 -0.7
273,460 + GFF278 0.35 -3.0
273,466 - GFF278 0.37 -1.3
273,468 - GFF278 0.37 +2.0
273,468 - GFF278 0.37 -0.5
273,468 - GFF278 0.37 -0.9
273,488 + GFF278 0.44 +0.0
273,496 - GFF278 0.46 +1.5
273,497 + GFF278 0.46 +0.9
273,497 + GFF278 0.46 +0.5
273,497 + GFF278 0.46 +1.4
273,505 - GFF278 0.49 -0.4
273,536 - GFF278 0.59 +0.5
273,568 + GFF278 0.69 -1.0
273,575 - GFF278 0.71 +0.6
273,576 - GFF278 0.72 -1.9
273,591 - GFF278 0.77 -1.6
273,608 + GFF278 0.82 -1.3
273,608 - GFF278 0.82 +0.0
273,616 - GFF278 0.85 -1.2
273,634 - -0.2
273,641 + +0.6
273,642 - +1.1
273,649 - +0.1
273,651 - +0.0
273,659 + -0.7
273,659 + +0.1
273,659 - -0.4
273,708 + GFF279 0.16 -1.0
273,722 + GFF279 0.20 +0.7
273,722 + GFF279 0.20 -0.9
273,728 - GFF279 0.22 -0.0
273,730 - GFF279 0.23 +0.0
273,739 + GFF279 0.25 -1.7
273,739 + GFF279 0.25 +0.1
273,739 + GFF279 0.25 -0.0
273,739 + GFF279 0.25 -0.3
273,744 + GFF279 0.27 -0.6
273,747 - GFF279 0.27 +0.8
273,747 - GFF279 0.27 -1.5
273,747 - GFF279 0.27 +0.1
273,747 - GFF279 0.27 -1.9
273,747 - GFF279 0.27 -0.9
273,747 - GFF279 0.27 -0.0
273,765 - GFF279 0.33 +0.5
273,770 + GFF279 0.34 -0.5
273,771 - GFF279 0.35 -1.2
273,813 + GFF279 0.47 +1.0
273,813 + GFF279 0.47 +1.1
273,813 + GFF279 0.47 -1.3
273,813 + GFF279 0.47 -0.4
273,813 + GFF279 0.47 +0.1
273,813 + GFF279 0.47 -0.7
273,813 + GFF279 0.47 +0.5
273,813 + GFF279 0.47 -0.6
273,813 + GFF279 0.47 +0.0
273,813 + GFF279 0.47 +0.6
273,813 + GFF279 0.47 +0.4
273,813 + GFF279 0.47 +1.2
273,813 + GFF279 0.47 +0.0
273,813 + GFF279 0.47 -0.6
273,813 + GFF279 0.47 -1.3
273,821 - GFF279 0.49 -1.4
273,821 - GFF279 0.49 -0.2
273,821 - GFF279 0.49 +0.7
273,821 - GFF279 0.49 +0.3
273,821 - GFF279 0.49 -1.0
273,821 - GFF279 0.49 -0.4
273,821 - GFF279 0.49 +0.5
273,821 - GFF279 0.49 -0.5
273,823 - GFF279 0.50 +0.2
273,838 - GFF279 0.54 -0.7
273,846 - GFF279 0.56 -1.1
273,858 - GFF279 0.60 -0.5
273,871 - GFF279 0.64 -1.4
273,871 - GFF279 0.64 +0.8
273,871 - GFF279 0.64 +1.4
273,927 + GFF279 0.80 -0.3
273,927 + GFF279 0.80 +1.0
273,927 + GFF279 0.80 -3.3
273,935 - GFF279 0.82 -1.5
273,937 + GFF279 0.83 -0.2
273,943 + GFF279 0.85 +0.1
273,966 - +1.0
273,983 - +1.2
273,985 + -0.4
273,990 + -0.5
273,995 + -0.7
274,003 - -0.0
274,003 - +1.2
274,003 - -0.7
274,003 - -0.2
274,004 + +1.0
274,009 + -0.3
274,017 + -0.0
274,019 + -0.0
274,025 - +1.0
274,025 - +1.2
274,027 - GFF280 0.10 -0.0
274,029 + GFF280 0.11 +0.4
274,029 + GFF280 0.11 -0.9
274,037 - GFF280 0.13 -0.7
274,037 - GFF280 0.13 -0.6
274,037 - GFF280 0.13 -0.6
274,061 + GFF280 0.20 +0.4
274,061 + GFF280 0.20 -2.6
274,069 - GFF280 0.22 +0.7
274,105 + GFF280 0.32 +1.8
274,105 + GFF280 0.32 +0.5
274,126 - GFF280 0.38 -0.8
274,128 + GFF280 0.39 +0.8
274,291 + GFF280 0.85 -0.5
274,317 - +1.2
274,347 - -1.8

Or see this region's nucleotide sequence