Strain Fitness in Sphingobium sp. HT1-2 around GFF2750

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,776,773	+		GFF2749	0.65	+1.0
2,776,781	-		GFF2749	0.66	+0.1
2,776,786	+		GFF2749	0.66	-0.6
2,776,786	+		GFF2749	0.66	-0.6
2,776,786	+		GFF2749	0.66	-0.0
2,776,794	-		GFF2749	0.66	-0.9
2,776,794	-		GFF2749	0.66	-0.7
2,776,800	-		GFF2749	0.66	+1.0
2,776,803	-		GFF2749	0.66	-1.3
2,776,803	-		GFF2749	0.66	+0.1
2,776,805	-		GFF2749	0.67	+1.0
2,776,821	+		GFF2749	0.67	-0.9
2,776,821	+		GFF2749	0.67	-0.8
2,776,821	+		GFF2749	0.67	-1.3
2,776,829	-		GFF2749	0.67	+0.0
2,776,840	+		GFF2749	0.68	-0.2
2,776,840	+		GFF2749	0.68	+0.9
2,776,848	-		GFF2749	0.68	+0.8
2,776,848	-		GFF2749	0.68	-0.4
2,776,848	-		GFF2749	0.68	+0.1
2,776,853	-		GFF2749	0.68	+0.3
2,776,854	+		GFF2749	0.68	-0.6
2,776,858	+		GFF2749	0.68	+1.2
2,776,863	+		GFF2749	0.69	-0.6
2,776,863	+		GFF2749	0.69	+0.1
2,776,863	+		GFF2749	0.69	+0.4
2,776,863	+		GFF2749	0.69	-0.2
2,776,863	+		GFF2749	0.69	+0.2
2,776,863	+		GFF2749	0.69	+0.2
2,776,863	+		GFF2749	0.69	+0.8
2,776,863	+		GFF2749	0.69	-0.9
2,776,863	+		GFF2749	0.69	-0.9
2,776,863	+		GFF2749	0.69	+0.2
2,776,863	+		GFF2749	0.69	-0.2
2,776,863	+		GFF2749	0.69	-1.2
2,776,863	+		GFF2749	0.69	-1.7
2,776,866	-		GFF2749	0.69	+1.0
2,776,868	+		GFF2749	0.69	+0.1
2,776,871	-		GFF2749	0.69	-0.4
2,776,871	-		GFF2749	0.69	-0.0
2,776,871	-		GFF2749	0.69	+0.6
2,776,871	-		GFF2749	0.69	+0.5
2,776,871	-		GFF2749	0.69	+1.4
2,776,871	-		GFF2749	0.69	-1.9
2,776,871	-		GFF2749	0.69	-0.1
2,776,871	-		GFF2749	0.69	-1.3
2,776,871	-		GFF2749	0.69	-1.5
2,776,871	-		GFF2749	0.69	+0.9
2,776,871	-		GFF2749	0.69	+1.0
2,776,871	-		GFF2749	0.69	-1.1
2,776,871	-		GFF2749	0.69	-0.2
2,776,871	-		GFF2749	0.69	+0.9
2,776,871	-		GFF2749	0.69	-0.9
2,776,871	-		GFF2749	0.69	-0.4
2,776,871	-		GFF2749	0.69	+0.4
2,776,871	-		GFF2749	0.69	-0.6
2,776,871	-		GFF2749	0.69	-0.7
2,776,871	-		GFF2749	0.69	+0.5
2,776,871	-		GFF2749	0.69	-1.0
2,776,871	-		GFF2749	0.69	-1.3
2,776,871	-		GFF2749	0.69	+1.3
2,776,871	-		GFF2749	0.69	-0.4
2,776,871	-		GFF2749	0.69	+0.2
2,776,876	-		GFF2749	0.69	-0.6
2,776,897	-		GFF2749	0.70	+0.9
2,776,900	+		GFF2749	0.70	-0.8
2,776,900	+		GFF2749	0.70	+1.1
2,776,918	-		GFF2749	0.71	-0.1
2,776,920	+		GFF2749	0.71	-0.6
2,776,925	+		GFF2749	0.71	-0.0
2,776,925	+		GFF2749	0.71	-0.5
2,776,925	+		GFF2749	0.71	+0.5
2,776,925	+		GFF2749	0.71	+0.2
2,776,925	+		GFF2749	0.71	-0.1
2,776,925	+		GFF2749	0.71	+0.4
2,776,925	+		GFF2749	0.71	-1.3
2,776,925	+		GFF2749	0.71	-0.4
2,776,925	+		GFF2749	0.71	-1.5
2,776,925	+		GFF2749	0.71	+1.0
2,776,925	+		GFF2749	0.71	-1.5
2,776,925	+		GFF2749	0.71	-1.5
2,776,930	+		GFF2749	0.71	-0.2
2,776,930	+		GFF2749	0.71	+0.4
2,776,930	+		GFF2749	0.71	-0.4
2,776,930	+		GFF2749	0.71	-0.1
2,776,930	+		GFF2749	0.71	+0.2
2,776,930	+		GFF2749	0.71	+0.4
2,776,930	+		GFF2749	0.71	-1.1
2,776,930	+		GFF2749	0.71	-1.1
2,776,930	+		GFF2749	0.71	-1.4
2,776,930	+		GFF2749	0.71	-1.1
2,776,930	+		GFF2749	0.71	-1.5
2,776,930	+		GFF2749	0.71	-0.3
2,776,930	+		GFF2749	0.71	-0.6
2,776,930	+		GFF2749	0.71	+0.4
2,776,933	-		GFF2749	0.71	-2.1
2,776,933	-		GFF2749	0.71	+0.3
2,776,933	-		GFF2749	0.71	+0.6
2,776,933	-		GFF2749	0.71	+0.5
2,776,933	-		GFF2749	0.71	-0.7
2,776,938	+		GFF2749	0.71	+1.0
2,776,938	-		GFF2749	0.71	-0.8
2,776,938	-		GFF2749	0.71	-0.2
2,776,938	-		GFF2749	0.71	-0.7
2,776,938	-		GFF2749	0.71	-1.3
2,776,938	-		GFF2749	0.71	-1.2
2,776,938	-		GFF2749	0.71	-1.9
2,776,938	-		GFF2749	0.71	+0.6
2,776,938	-		GFF2749	0.71	-0.7
2,776,938	-		GFF2749	0.71	-0.5
2,776,938	-		GFF2749	0.71	+0.8
2,776,938	-		GFF2749	0.71	+0.5
2,776,938	-		GFF2749	0.71	-0.4
2,776,940	-		GFF2749	0.71	+0.4
2,776,940	-		GFF2749	0.71	-1.3
2,776,940	-		GFF2749	0.71	+0.3
2,776,940	-		GFF2749	0.71	-0.2
2,776,964	-		GFF2749	0.72	-0.3
2,776,992	+		GFF2749	0.73	-1.4
2,777,000	-		GFF2749	0.73	-0.4
2,777,000	-		GFF2749	0.73	-0.9
2,777,024	-		GFF2749	0.74	+1.0
2,777,040	+		GFF2749	0.75	-0.3
2,777,040	+		GFF2749	0.75	-1.9
2,777,048	-		GFF2749	0.75	-1.3
2,777,053	+		GFF2749	0.75	+1.0
2,777,053	+		GFF2749	0.75	+0.2
2,777,059	+		GFF2749	0.75	+0.2
2,777,059	+		GFF2749	0.75	-1.6
2,777,060	+		GFF2749	0.76	-0.3
2,777,061	-		GFF2749	0.76	-0.2
2,777,061	-		GFF2749	0.76	+1.6
2,777,072	-		GFF2749	0.76	+1.5
2,777,083	+		GFF2749	0.76	-0.9
2,777,101	-		GFF2749	0.77	+0.3
2,777,115	-		GFF2749	0.77	-2.5
2,777,143	+		GFF2749	0.78	+0.5
2,777,160	+		GFF2749	0.79	+0.8
2,777,165	+		GFF2749	0.79	+1.2
2,777,184	-		GFF2749	0.80	+0.7
2,777,229	+		GFF2749	0.81	+0.1
2,777,242	+		GFF2749	0.82	-1.7
2,777,250	+		GFF2749	0.82	-0.9
2,777,250	+		GFF2749	0.82	-1.1
2,777,258	-		GFF2749	0.82	+0.1
2,777,258	-		GFF2749	0.82	-0.6
2,777,260	+		GFF2749	0.83	-0.8
2,777,268	-		GFF2749	0.83	-0.2
2,777,274	-		GFF2749	0.83	-1.4
2,777,276	+		GFF2749	0.83	-2.1
2,777,279	-		GFF2749	0.83	-0.9
2,777,284	-		GFF2749	0.83	-0.1
2,777,284	-		GFF2749	0.83	+2.5
2,777,284	-		GFF2749	0.83	+0.9
2,777,284	-		GFF2749	0.83	+0.3
2,777,289	-		GFF2749	0.84	-0.4
2,777,289	-		GFF2749	0.84	-0.1
2,777,317	+		GFF2749	0.85	-1.5
2,777,324	+		GFF2749	0.85	+0.5
2,777,324	-		GFF2749	0.85	-2.2
2,777,331	+		GFF2749	0.85	+0.2
2,777,331	+		GFF2749	0.85	-1.3
2,777,336	+		GFF2749	0.85	-0.3
2,777,339	-		GFF2749	0.85	-0.2
2,777,339	-		GFF2749	0.85	-0.8
2,777,343	+		GFF2749	0.85	+0.7
2,777,349	-		GFF2749	0.86	+0.9
2,777,349	-		GFF2749	0.86	-0.8
2,777,351	-		GFF2749	0.86	-0.1
2,777,353	+		GFF2749	0.86	+0.0
2,777,355	+		GFF2749	0.86	+1.0
2,777,358	-		GFF2749	0.86	-0.6
2,777,360	+		GFF2749	0.86	-2.2
2,777,360	+		GFF2749	0.86	-0.4
2,777,360	+		GFF2749	0.86	+0.6
2,777,360	+		GFF2749	0.86	-1.3
2,777,367	+		GFF2749	0.86	+0.2
2,777,367	+		GFF2749	0.86	-0.1
2,777,367	+		GFF2749	0.86	-0.9
2,777,367	+		GFF2749	0.86	-0.4
2,777,367	+		GFF2749	0.86	+0.3
2,777,367	+		GFF2749	0.86	+1.1
2,777,367	+		GFF2749	0.86	-1.1
2,777,367	+		GFF2749	0.86	-1.3
2,777,367	+		GFF2749	0.86	-1.4
2,777,367	+		GFF2749	0.86	-0.8
2,777,367	+		GFF2749	0.86	-0.6
2,777,367	+		GFF2749	0.86	+0.1
2,777,368	-		GFF2749	0.86	-1.6
2,777,368	-		GFF2749	0.86	-0.5
2,777,368	-		GFF2749	0.86	+1.0
2,777,375	-		GFF2749	0.87	+0.2
2,777,377	+		GFF2749	0.87	+0.4
2,777,387	+		GFF2749	0.87	-1.1
2,777,390	-		GFF2749	0.87	+0.3
2,777,395	-		GFF2749	0.87	+0.1
2,777,444	+		GFF2749	0.89	-0.9
2,777,452	-		GFF2749	0.89	+0.3
2,777,466	+		GFF2749	0.90	+0.4
2,777,513	+				-1.8
2,777,563	+				-1.7
2,777,581	+				+0.6
2,777,581	+				-0.0
2,777,589	-				-0.3
2,777,589	-				-0.4
2,777,591	+				+0.1
2,777,591	+				-1.4
2,777,591	+				+1.2
2,777,591	+				+1.7
2,777,599	-				-1.2
2,777,599	-				+0.6
2,777,599	-				-0.1
2,777,619	+				+0.4
2,777,619	+				-1.2
2,777,627	-				-0.6
2,777,627	-				+0.5
2,777,629	+				-1.4
2,777,644	+				+0.6
2,777,652	+				+0.4
2,777,652	+				+0.7
2,777,652	+				+0.0
2,777,657	+				+0.6
2,777,660	-				+0.0
2,777,660	-				-1.9
2,777,660	-				-0.6
2,777,662	+				-0.6
2,777,662	+				+0.3
2,777,663	+				-1.0
2,777,665	-				+0.8
2,777,666	-				+0.5
2,777,670	-				+0.1
2,777,670	-				-0.3
2,777,675	-				+0.8
2,777,681	+				-2.6
2,777,691	+				-0.3
2,777,691	+				-1.5
2,777,697	-				-0.6
2,777,699	+				-0.6
2,777,699	-				-1.6
2,777,699	-				+0.2
2,777,759	+				+0.0
2,777,768	+				-0.7
2,777,770	+				+0.3
2,777,777	+				-0.4
2,777,794	-		GFF2750	0.11	-0.8
2,777,816	+		GFF2750	0.17	+1.3
2,777,823	+		GFF2750	0.19	+0.6
2,777,823	+		GFF2750	0.19	-0.6
2,777,823	+		GFF2750	0.19	-0.6
2,777,823	+		GFF2750	0.19	+0.1
2,777,823	+		GFF2750	0.19	-1.0
2,777,823	+		GFF2750	0.19	+1.2
2,777,823	+		GFF2750	0.19	+0.4
2,777,823	+		GFF2750	0.19	-1.2
2,777,823	+		GFF2750	0.19	+0.1
2,777,823	+		GFF2750	0.19	-0.1
2,777,823	+		GFF2750	0.19	-0.1
2,777,824	-		GFF2750	0.19	-0.9
2,777,824	-		GFF2750	0.19	-1.8
2,777,829	-		GFF2750	0.20	-0.7
2,777,829	-		GFF2750	0.20	+0.6
2,777,831	-		GFF2750	0.21	-0.1
2,777,831	-		GFF2750	0.21	+0.3
2,777,831	-		GFF2750	0.21	-0.6
2,777,831	-		GFF2750	0.21	-0.4
2,777,831	-		GFF2750	0.21	-1.1
2,777,831	-		GFF2750	0.21	+0.5
2,777,831	-		GFF2750	0.21	+0.2
2,777,831	-		GFF2750	0.21	+1.2
2,777,831	-		GFF2750	0.21	+0.6
2,777,831	-		GFF2750	0.21	-0.8
2,777,831	-		GFF2750	0.21	-0.3
2,777,831	-		GFF2750	0.21	+0.2
2,777,831	-		GFF2750	0.21	-0.6
2,777,831	-		GFF2750	0.21	-0.8
2,777,831	-		GFF2750	0.21	+0.3
2,777,833	+		GFF2750	0.21	-0.6
2,777,833	+		GFF2750	0.21	-1.0
2,777,841	-		GFF2750	0.24	+0.4
2,777,866	-		GFF2750	0.30	+1.0
2,777,892	-		GFF2750	0.37	-0.4
2,777,907	+		GFF2750	0.41	-0.9
2,777,910	-		GFF2750	0.42	+0.2
2,777,929	-		GFF2750	0.47	-1.2
2,777,938	-		GFF2750	0.49	-1.2
2,777,956	+		GFF2750	0.54	+0.1
2,777,964	-		GFF2750	0.56	-1.9
2,777,970	-		GFF2750	0.58	+0.3
2,777,990	-		GFF2750	0.63	-0.5
2,777,995	+		GFF2750	0.64	+1.0
2,778,020	+		GFF2750	0.71	-1.0
2,778,020	+		GFF2750	0.71	-0.7
2,778,028	-		GFF2750	0.73	-1.3
2,778,028	-		GFF2750	0.73	+0.4
2,778,033	-		GFF2750	0.74	-1.3
2,778,033	-		GFF2750	0.74	-0.0
2,778,051	-		GFF2750	0.79	-1.3
2,778,064	+		GFF2750	0.83	-1.9
2,778,072	-		GFF2750	0.85	-2.7
2,778,079	+		GFF2750	0.87	+0.9
2,778,082	-		GFF2750	0.87	-1.1
2,778,084	+		GFF2750	0.88	-2.5
2,778,092	-				-0.9
2,778,092	-				-2.1
2,778,092	-				-0.1
2,778,092	-				+0.4
2,778,092	-				-2.1
2,778,092	-				-3.1
2,778,092	-				-1.4
2,778,107	+				-0.2
2,778,112	+				+0.8
2,778,112	+				-0.7
2,778,112	+				-0.8
2,778,112	+				-2.0
2,778,112	+				+1.5
2,778,112	+				+0.2
2,778,112	+				-1.1
2,778,119	+				+0.9
2,778,119	+				+0.8
2,778,119	+				-0.1
2,778,119	+				-1.1
2,778,119	+				-0.7
2,778,119	+				-1.4
2,778,119	+				+1.4
2,778,119	+				+0.4
2,778,119	+				-0.7
2,778,119	+				+0.1
2,778,124	+				-0.1
2,778,124	+				-1.7
2,778,124	+				-1.1
2,778,149	+				-1.7
2,778,185	-				-1.3
2,778,185	-				-0.7
2,778,294	+				-1.8
2,778,336	+				-2.6
2,778,336	+				-1.5
2,778,357	-				-0.8
2,778,362	+				+0.1
2,778,362	+				-0.7
2,778,370	-				-0.3
2,778,380	-				+0.5
2,778,405	+				-2.4
2,778,405	+				-2.0
2,778,405	+				+0.5
2,778,405	+				-0.3
2,778,405	+				-0.5
2,778,405	+				+0.4
2,778,405	+				+0.9
2,778,405	+				-0.5
2,778,405	+				-0.4
2,778,405	+				-0.1
2,778,405	+				-1.3
2,778,405	+				-1.1
2,778,405	+				+0.2
2,778,405	+				-1.1
2,778,405	+				-1.1
2,778,413	-				-1.3
2,778,413	-				-1.2
2,778,413	-				+0.2
2,778,413	-				+1.4
2,778,413	-				-1.1
2,778,413	-				+0.1
2,778,413	-				-1.2
2,778,417	+				-0.6
2,778,417	+				-0.1
2,778,417	+				+0.1
2,778,417	+				+0.5
2,778,420	-				-1.4
2,778,420	-				+1.9
2,778,425	-				-0.8
2,778,460	+				+0.4
2,778,468	-				-0.1
2,778,472	+				-1.0
2,778,472	+				-0.5
2,778,499	+		GFF2751	0.25	-0.4
2,778,524	+		GFF2751	0.46	-2.3
2,778,526	+		GFF2751	0.48	+0.1
2,778,559	+		GFF2751	0.76	+1.2
2,778,714	+				-1.1
2,778,722	-				-1.1
2,778,770	-		GFF2752	0.12	+0.2
2,778,785	+		GFF2752	0.13	-1.2
2,778,959	-		GFF2752	0.24	-0.4
2,779,018	-		GFF2752	0.28	-1.2
2,779,076	+		GFF2752	0.32	-0.5
2,779,087	+		GFF2752	0.33	-1.5
2,779,102	+		GFF2752	0.34	-1.4
2,779,105	-		GFF2752	0.34	-1.2
2,779,105	-		GFF2752	0.34	-1.3
2,779,115	-		GFF2752	0.35	+0.4