Strain Fitness in Sphingobium sp. HT1-2 around GFF265

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
261,678	-				-1.2
261,678	-				-2.1
261,711	+		GFF262	0.19	-0.9
261,720	+		GFF262	0.22	+0.5
261,720	+		GFF262	0.22	-0.8
261,724	+		GFF262	0.23	-1.2
261,724	+		GFF262	0.23	-0.1
261,724	+		GFF262	0.23	+0.7
261,731	-		GFF262	0.25	-1.4
261,732	-		GFF262	0.26	-1.0
261,739	+		GFF262	0.28	-2.2
261,742	-		GFF262	0.29	-0.3
261,766	-		GFF262	0.37	-1.8
261,767	+		GFF262	0.37	+0.5
261,798	+		GFF262	0.48	-2.7
261,806	-		GFF262	0.50	-1.8
261,811	-		GFF262	0.52	-0.5
261,822	-		GFF262	0.55	-1.2
261,824	+		GFF262	0.56	-1.1
261,824	+		GFF262	0.56	-1.4
261,824	+		GFF262	0.56	-2.0
261,824	+		GFF262	0.56	-1.1
261,824	+		GFF262	0.56	-1.3
261,824	+		GFF262	0.56	-1.3
261,827	-		GFF262	0.57	-0.4
261,829	+		GFF262	0.58	-0.0
261,832	-		GFF262	0.59	-1.1
261,832	-		GFF262	0.59	+0.8
261,832	-		GFF262	0.59	-2.5
261,832	-		GFF262	0.59	-1.1
261,832	-		GFF262	0.59	+0.2
261,832	-		GFF262	0.59	-0.3
261,832	-		GFF262	0.59	+0.7
261,832	-		GFF262	0.59	-0.8
261,832	-		GFF262	0.59	-0.8
261,832	-		GFF262	0.59	-0.2
261,832	-		GFF262	0.59	+2.1
261,832	-		GFF262	0.59	-0.1
261,846	+		GFF262	0.63	-1.3
261,892	+		GFF262	0.79	+1.1
261,892	+		GFF262	0.79	-0.3
261,900	-		GFF262	0.81	-2.3
261,900	-		GFF262	0.81	-0.2
261,911	-		GFF262	0.85	-0.3
261,914	-		GFF262	0.86	-0.5
261,917	+		GFF262	0.87	-1.0
261,918	-		GFF262	0.87	-1.7
261,928	+				-0.8
261,928	+				+1.0
261,928	-				-0.1
261,937	+				-0.0
261,943	+				+1.4
261,945	-				-2.2
261,950	+				-0.3
261,950	+				-0.4
261,958	+				+0.6
261,958	+				+0.7
261,958	+				+0.2
261,958	-				-0.4
261,958	-				+0.0
261,958	-				+0.7
261,958	-				+0.0
261,960	+				-0.7
261,960	-				-0.3
261,966	-				+0.8
261,966	-				+0.4
261,966	-				-0.4
261,968	+				+0.1
261,976	-				-0.6
261,986	+				-1.5
261,986	+				+0.7
261,996	+				-0.5
261,996	+				+0.6
262,003	+				+1.2
262,003	+				-2.3
262,003	+				-1.3
262,003	+				-2.3
262,003	+				-0.1
262,004	-				+1.1
262,011	-				+0.0
262,011	-				-0.3
262,011	-				+0.7
262,011	-				-0.8
262,011	-				-0.0
262,011	-				+0.2
262,011	-				+0.2
262,011	-				-0.5
262,011	-				+0.3
262,024	-				-0.5
262,036	+				-1.9
262,036	-				-0.2
262,036	-				+1.1
262,049	-				-1.5
262,061	+				-1.1
262,066	+				-1.2
262,069	-				+0.9
262,071	-		GFF263	0.10	-0.4
262,071	-		GFF263	0.10	+0.5
262,073	+		GFF263	0.11	-1.2
262,073	+		GFF263	0.11	-0.8
262,074	-		GFF263	0.11	-0.9
262,078	+		GFF263	0.12	-1.8
262,078	+		GFF263	0.12	+0.9
262,081	-		GFF263	0.13	-0.2
262,081	-		GFF263	0.13	-2.1
262,086	-		GFF263	0.15	+0.1
262,086	-		GFF263	0.15	-0.1
262,086	-		GFF263	0.15	-1.2
262,087	+		GFF263	0.15	+1.0
262,088	+		GFF263	0.15	+0.8
262,096	-		GFF263	0.18	+0.5
262,099	-		GFF263	0.19	-1.5
262,112	+		GFF263	0.23	+1.4
262,132	-		GFF263	0.29	+1.4
262,132	-		GFF263	0.29	-0.1
262,134	+		GFF263	0.29	+0.5
262,156	+		GFF263	0.36	-1.6
262,158	+		GFF263	0.36	-0.0
262,158	+		GFF263	0.36	-1.4
262,158	+		GFF263	0.36	-1.1
262,164	-		GFF263	0.38	+0.2
262,166	-		GFF263	0.39	-0.4
262,166	-		GFF263	0.39	-0.5
262,166	-		GFF263	0.39	+0.7
262,166	-		GFF263	0.39	-1.9
262,166	-		GFF263	0.39	-1.3
262,177	-		GFF263	0.42	+0.0
262,178	+		GFF263	0.42	+0.9
262,213	+		GFF263	0.53	-0.9
262,233	-		GFF263	0.59	-0.6
262,234	-		GFF263	0.59	-0.4
262,234	-		GFF263	0.59	-0.7
262,235	-		GFF263	0.59	-0.1
262,244	-		GFF263	0.62	-0.2
262,250	+		GFF263	0.64	+0.9
262,250	+		GFF263	0.64	+1.0
262,250	+		GFF263	0.64	-0.6
262,254	+		GFF263	0.65	+1.6
262,258	-		GFF263	0.66	+1.8
262,258	-		GFF263	0.66	-0.3
262,258	-		GFF263	0.66	-1.6
262,258	-		GFF263	0.66	-1.5
262,258	-		GFF263	0.66	+0.5
262,345	+				+0.3
262,361	-				+0.1
262,369	-				+0.1
262,382	+				-1.3
262,396	+		GFF264	0.14	-1.8
262,398	+		GFF264	0.15	-1.8
262,398	+		GFF264	0.15	+1.0
262,398	+		GFF264	0.15	-1.3
262,398	-		GFF264	0.15	+0.2
262,405	+		GFF264	0.19	-1.9
262,405	+		GFF264	0.19	+0.0
262,406	+		GFF264	0.19	+0.5
262,406	+		GFF264	0.19	+0.4
262,406	+		GFF264	0.19	-1.7
262,406	+		GFF264	0.19	-0.3
262,406	+		GFF264	0.19	-1.4
262,406	+		GFF264	0.19	-0.4
262,406	-		GFF264	0.19	-1.4
262,408	+		GFF264	0.20	-0.1
262,414	-		GFF264	0.23	-0.9
262,414	-		GFF264	0.23	-2.2
262,414	-		GFF264	0.23	-0.4
262,414	-		GFF264	0.23	+0.5
262,414	-		GFF264	0.23	-0.3
262,414	-		GFF264	0.23	+0.4
262,414	-		GFF264	0.23	-0.5
262,414	-		GFF264	0.23	+0.4
262,414	-		GFF264	0.23	-0.3
262,414	-		GFF264	0.23	+0.3
262,416	-		GFF264	0.24	-0.6
262,416	-		GFF264	0.24	-1.8
262,416	-		GFF264	0.24	-1.3
262,416	-		GFF264	0.24	-1.0
262,436	+		GFF264	0.34	-0.4
262,441	+		GFF264	0.37	-1.4
262,441	+		GFF264	0.37	-0.1
262,441	+		GFF264	0.37	+1.0
262,441	+		GFF264	0.37	-2.0
262,441	+		GFF264	0.37	-1.6
262,446	+		GFF264	0.39	-1.3
262,448	+		GFF264	0.40	-1.5
262,448	+		GFF264	0.40	-1.6
262,448	+		GFF264	0.40	+0.4
262,448	+		GFF264	0.40	+0.8
262,448	+		GFF264	0.40	-1.9
262,449	+		GFF264	0.41	+0.4
262,449	-		GFF264	0.41	-2.0
262,449	-		GFF264	0.41	-1.6
262,449	-		GFF264	0.41	+0.2
262,449	-		GFF264	0.41	+0.2
262,449	-		GFF264	0.41	-2.1
262,449	-		GFF264	0.41	-0.1
262,449	-		GFF264	0.41	-0.4
262,449	-		GFF264	0.41	-1.2
262,456	-		GFF264	0.44	-0.2
262,456	-		GFF264	0.44	-1.3
262,463	-		GFF264	0.48	-0.5
262,465	+		GFF264	0.49	-1.1
262,465	+		GFF264	0.49	-1.7
262,465	+		GFF264	0.49	+0.0
262,465	+		GFF264	0.49	+0.1
262,465	+		GFF264	0.49	-1.3
262,465	+		GFF264	0.49	-1.6
262,465	+		GFF264	0.49	-0.1
262,473	-		GFF264	0.53	-0.7
262,473	-		GFF264	0.53	-1.5
262,473	-		GFF264	0.53	-2.0
262,473	-		GFF264	0.53	-1.4
262,473	-		GFF264	0.53	-0.2
262,473	-		GFF264	0.53	+0.9
262,473	-		GFF264	0.53	+0.9
262,473	-		GFF264	0.53	+1.6
262,475	-		GFF264	0.54	-1.5
262,480	+		GFF264	0.57	+0.4
262,483	-		GFF264	0.58	-0.2
262,485	+		GFF264	0.59	-1.7
262,488	-		GFF264	0.61	-0.2
262,489	+		GFF264	0.61	-0.3
262,498	-		GFF264	0.66	+0.3
262,510	-		GFF264	0.72	-1.1
262,519	+		GFF264	0.76	-1.4
262,533	+		GFF264	0.83	+1.1
262,533	-		GFF264	0.83	-0.0
262,535	+		GFF264	0.84	+1.6
262,542	-		GFF264	0.88	+0.1
262,543	-		GFF264	0.88	-0.3
262,544	+		GFF264	0.89	-0.5
262,544	+		GFF264	0.89	-0.2
262,544	+		GFF264	0.89	+0.4
262,544	+		GFF264	0.89	+0.4
262,550	+				+0.4
262,550	+				-0.6
262,550	+				-0.3
262,550	+				-0.5
262,552	-				-0.2
262,552	-				-0.1
262,552	-				-2.0
262,558	-				-0.5
262,558	-				-2.0
262,559	+				+0.8
262,559	+				+1.0
262,559	+				-0.3
262,559	+				-1.8
262,559	+				-0.7
262,567	-				+0.7
262,567	-				-1.8
262,567	-				+0.1
262,567	-				-2.2
262,567	-				-0.2
262,569	+				-1.1
262,577	-				-2.4
262,583	+				+0.6
262,583	+				-0.4
262,583	+				+1.1
262,583	+				+1.4
262,583	+				+0.3
262,591	-				-1.1
262,599	+				+0.2
262,599	+				+0.4
262,636	+				-0.4
262,640	+				+0.8
262,641	+				+0.1
262,641	+				+0.0
262,649	-				-0.6
262,649	-				-0.4
262,651	+				-1.1
262,659	+				-1.3
262,659	+				-1.2
262,659	+				+0.4
262,659	+				+0.0
262,659	+				-2.0
262,659	+				+0.5
262,659	+				-0.3
262,659	+				-2.8
262,659	+				-2.3
262,665	-				-1.2
262,667	-				-1.5
262,667	-				-2.0
262,667	-				-1.4
262,667	-				-0.4
262,667	-				-0.4
262,667	-				-1.9
262,667	-				-0.4
262,667	-				+0.2
262,667	-				-2.0
262,668	-				-1.3
262,679	-				-2.2
262,681	+				-2.1
262,681	+				-0.4
262,689	-				-1.2
262,689	-				-1.7
262,704	+				-1.3
262,704	-				-0.6
262,725	-				-2.4
262,729	-				-0.3
262,734	-				+0.6
262,739	-				-1.3
262,753	+		GFF265	0.10	-0.3
262,755	+		GFF265	0.10	-0.4
262,761	-		GFF265	0.11	-0.5
262,763	-		GFF265	0.11	-0.6
262,797	+		GFF265	0.16	-2.2
262,867	-		GFF265	0.25	-0.7
262,882	+		GFF265	0.27	+0.2
262,882	+		GFF265	0.27	+0.1
262,890	-		GFF265	0.28	-1.3
262,900	-		GFF265	0.30	+0.5
262,909	+		GFF265	0.31	-2.0
262,909	+		GFF265	0.31	-1.1
262,910	-		GFF265	0.31	-1.8
262,935	-		GFF265	0.34	+1.2
262,953	-		GFF265	0.37	+0.5
262,958	-		GFF265	0.37	-2.3
262,968	+		GFF265	0.39	-1.0
262,976	+		GFF265	0.40	-2.0
262,984	-		GFF265	0.41	-0.2
262,986	+		GFF265	0.41	-2.3
262,989	-		GFF265	0.41	-0.2
262,991	+		GFF265	0.42	+0.7
262,994	-		GFF265	0.42	-0.3
263,001	-		GFF265	0.43	-1.4
263,022	+		GFF265	0.46	+0.3
263,023	+		GFF265	0.46	-3.3
263,030	+		GFF265	0.47	-1.7
263,038	-		GFF265	0.48	-2.2
263,048	+		GFF265	0.49	+0.0
263,048	+		GFF265	0.49	-0.4
263,050	-		GFF265	0.50	-1.5
263,053	+		GFF265	0.50	-0.6
263,053	+		GFF265	0.50	-1.7
263,053	+		GFF265	0.50	-1.6
263,053	+		GFF265	0.50	-0.7
263,054	+		GFF265	0.50	-0.7
263,056	-		GFF265	0.50	+0.4
263,064	+		GFF265	0.51	-0.0
263,072	-		GFF265	0.52	-0.6
263,087	+		GFF265	0.54	-1.2
263,095	-		GFF265	0.56	+0.2
263,098	+		GFF265	0.56	-0.2
263,131	+		GFF265	0.60	-2.3
263,131	+		GFF265	0.60	-0.3
263,131	+		GFF265	0.60	-1.7
263,138	+		GFF265	0.61	+1.4
263,157	+		GFF265	0.64	+1.2
263,161	+		GFF265	0.64	+1.0
263,161	+		GFF265	0.64	-3.1
263,161	+		GFF265	0.64	-1.7
263,169	-		GFF265	0.65	-1.1
263,169	-		GFF265	0.65	-1.3
263,178	+		GFF265	0.67	-1.6
263,178	+		GFF265	0.67	-1.3
263,179	-		GFF265	0.67	-0.2
263,180	+		GFF265	0.67	-1.5
263,186	-		GFF265	0.68	-2.6
263,186	-		GFF265	0.68	+0.1
263,186	-		GFF265	0.68	-1.3
263,186	-		GFF265	0.68	-0.6
263,193	-		GFF265	0.69	-0.7
263,209	-		GFF265	0.71	+2.6
263,229	-		GFF265	0.73	-0.3
263,229	-		GFF265	0.73	-1.1
263,282	+		GFF265	0.80	-1.6
263,294	+		GFF265	0.82	+0.4
263,294	+		GFF265	0.82	-1.5
263,294	+		GFF265	0.82	-2.2
263,297	-		GFF265	0.82	+0.5
263,300	-		GFF265	0.83	-2.2
263,302	-		GFF265	0.83	-2.2
263,302	-		GFF265	0.83	-2.0
263,302	-		GFF265	0.83	-0.4
263,302	-		GFF265	0.83	+0.0
263,323	-		GFF265	0.86	-0.9
263,324	+		GFF265	0.86	-0.7
263,329	+		GFF265	0.87	-0.9
263,329	+		GFF265	0.87	-0.3
263,329	+		GFF265	0.87	-1.8
263,337	-		GFF265	0.88	+1.0
263,337	-		GFF265	0.88	+0.0
263,337	-		GFF265	0.88	+0.3
263,337	-		GFF265	0.88	+1.3
263,337	-		GFF265	0.88	-0.5
263,337	-		GFF265	0.88	+0.4
263,337	-		GFF265	0.88	+2.2
263,371	+				-0.2
263,389	+				+0.4
263,389	+				-1.1
263,394	+				-0.4
263,394	+				-2.0
263,397	-				-0.4
263,399	+				-2.3
263,422	-				-1.4
263,422	-				-1.8
263,424	+				+0.7
263,424	+				+1.1
263,426	+				-1.0
263,432	-				-2.0
263,446	+				+0.5
263,470	+				-0.2
263,470	+				-0.1
263,470	+				+0.4
263,470	+				+0.9
263,470	+				-2.2
263,478	-		GFF266	0.12	-1.2
263,478	-		GFF266	0.12	-1.7
263,478	-		GFF266	0.12	-0.4
263,478	-		GFF266	0.12	-1.2
263,478	-		GFF266	0.12	-0.6
263,482	+		GFF266	0.14	+0.6
263,504	-		GFF266	0.23	-0.3
263,509	-		GFF266	0.25	+0.1
263,524	-		GFF266	0.32	-0.4
263,525	-		GFF266	0.32	-1.8
263,548	+		GFF266	0.42	-0.4
263,548	+		GFF266	0.42	-0.7
263,554	+		GFF266	0.44	-1.2
263,554	+		GFF266	0.44	+0.0
263,554	+		GFF266	0.44	-1.4
263,561	+		GFF266	0.47	-1.5
263,562	-		GFF266	0.48	-1.6
263,562	-		GFF266	0.48	-2.2
263,562	-		GFF266	0.48	-1.6
263,562	-		GFF266	0.48	-0.7
263,562	-		GFF266	0.48	+1.2
263,562	-		GFF266	0.48	-1.7
263,566	+		GFF266	0.49	-0.7
263,566	+		GFF266	0.49	-1.1
263,568	+		GFF266	0.50	+0.3
263,568	+		GFF266	0.50	+0.3
263,574	-		GFF266	0.53	-0.5
263,592	+		GFF266	0.60	+0.7
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