Strain Fitness in Sphingobium sp. HT1-2 around GFF2613

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,633,848	+				+1.3
2,633,851	-				+0.8
2,633,851	-				-0.1
2,633,871	+				+1.1
2,633,876	+				+0.5
2,633,879	-				-0.8
2,633,879	-				-1.8
2,633,879	-				+0.2
2,633,884	-				-0.6
2,633,902	+				-0.3
2,633,922	+				-1.0
2,633,959	-		GFF2612	0.11	-0.4
2,633,997	+		GFF2612	0.15	+1.4
2,634,000	-		GFF2612	0.15	+0.0
2,634,005	-		GFF2612	0.16	-0.9
2,634,085	+		GFF2612	0.24	-1.8
2,634,098	+		GFF2612	0.25	+0.3
2,634,134	+		GFF2612	0.29	+0.1
2,634,137	-		GFF2612	0.29	+0.8
2,634,137	-		GFF2612	0.29	-0.5
2,634,137	-		GFF2612	0.29	+0.7
2,634,142	-		GFF2612	0.30	-0.8
2,634,142	-		GFF2612	0.30	-0.7
2,634,158	+		GFF2612	0.31	-0.1
2,634,183	-		GFF2612	0.34	-0.8
2,634,215	+		GFF2612	0.37	-0.2
2,634,222	+		GFF2612	0.38	+0.2
2,634,232	+		GFF2612	0.39	+1.6
2,634,232	+		GFF2612	0.39	-0.3
2,634,232	+		GFF2612	0.39	-0.5
2,634,240	-		GFF2612	0.39	-0.3
2,634,240	-		GFF2612	0.39	-1.6
2,634,240	-		GFF2612	0.39	+0.1
2,634,240	-		GFF2612	0.39	+0.1
2,634,268	+		GFF2612	0.42	-0.6
2,634,275	+		GFF2612	0.43	-0.8
2,634,275	+		GFF2612	0.43	-1.2
2,634,275	+		GFF2612	0.43	+1.2
2,634,275	+		GFF2612	0.43	-1.0
2,634,283	-		GFF2612	0.44	-1.0
2,634,283	-		GFF2612	0.44	-0.2
2,634,283	-		GFF2612	0.44	-0.5
2,634,283	-		GFF2612	0.44	-0.6
2,634,285	+		GFF2612	0.44	-0.1
2,634,285	+		GFF2612	0.44	-2.4
2,634,285	+		GFF2612	0.44	+0.8
2,634,293	-		GFF2612	0.45	-0.8
2,634,294	+		GFF2612	0.45	-0.2
2,634,304	+		GFF2612	0.46	-1.3
2,634,312	+		GFF2612	0.46	+1.7
2,634,312	-		GFF2612	0.46	-1.1
2,634,312	-		GFF2612	0.46	-0.6
2,634,317	+		GFF2612	0.47	-0.2
2,634,323	+		GFF2612	0.48	-1.1
2,634,348	-		GFF2612	0.50	-0.5
2,634,354	-		GFF2612	0.51	-1.6
2,634,369	-		GFF2612	0.52	+0.4
2,634,369	-		GFF2612	0.52	-0.1
2,634,381	+		GFF2612	0.53	-0.7
2,634,398	+		GFF2612	0.55	+0.0
2,634,398	+		GFF2612	0.55	-1.1
2,634,398	+		GFF2612	0.55	-1.2
2,634,401	+		GFF2612	0.55	-2.3
2,634,406	-		GFF2612	0.56	-0.8
2,634,406	-		GFF2612	0.56	-0.1
2,634,406	-		GFF2612	0.56	+0.7
2,634,408	+		GFF2612	0.56	-0.4
2,634,408	-		GFF2612	0.56	+1.4
2,634,410	+		GFF2612	0.56	-0.3
2,634,433	+		GFF2612	0.59	-0.1
2,634,436	+		GFF2612	0.59	-1.1
2,634,463	-		GFF2612	0.61	+1.5
2,634,463	-		GFF2612	0.61	-0.0
2,634,466	+		GFF2612	0.62	-1.1
2,634,466	+		GFF2612	0.62	+0.2
2,634,467	+		GFF2612	0.62	+1.1
2,634,472	-		GFF2612	0.62	-0.1
2,634,472	-		GFF2612	0.62	+0.2
2,634,475	+		GFF2612	0.63	-1.2
2,634,475	-		GFF2612	0.63	-0.0
2,634,483	+		GFF2612	0.63	-0.5
2,634,483	+		GFF2612	0.63	-2.0
2,634,483	+		GFF2612	0.63	+1.0
2,634,490	+		GFF2612	0.64	-1.2
2,634,490	+		GFF2612	0.64	-2.5
2,634,490	+		GFF2612	0.64	-1.6
2,634,491	-		GFF2612	0.64	-1.6
2,634,493	-		GFF2612	0.64	+0.1
2,634,498	-		GFF2612	0.65	-0.3
2,634,498	-		GFF2612	0.65	+1.2
2,634,498	-		GFF2612	0.65	-0.2
2,634,498	-		GFF2612	0.65	-0.1
2,634,500	-		GFF2612	0.65	-1.8
2,634,502	+		GFF2612	0.65	-0.6
2,634,502	+		GFF2612	0.65	+0.5
2,634,502	+		GFF2612	0.65	+0.3
2,634,510	-		GFF2612	0.66	+1.3
2,634,562	+		GFF2612	0.71	-0.8
2,634,580	-		GFF2612	0.73	-0.6
2,634,588	+		GFF2612	0.74	+0.4
2,634,596	-		GFF2612	0.75	-1.3
2,634,617	-		GFF2612	0.77	-1.0
2,634,646	+		GFF2612	0.80	-0.4
2,634,646	+		GFF2612	0.80	-0.9
2,634,646	+		GFF2612	0.80	-0.3
2,634,646	-		GFF2612	0.80	+1.8
2,634,654	-		GFF2612	0.80	-0.6
2,634,654	-		GFF2612	0.80	+0.5
2,634,654	-		GFF2612	0.80	+1.0
2,634,655	+		GFF2612	0.81	+0.5
2,634,667	+		GFF2612	0.82	-0.2
2,634,668	+		GFF2612	0.82	-0.5
2,634,668	-		GFF2612	0.82	+1.2
2,634,669	-		GFF2612	0.82	+0.8
2,634,676	-		GFF2612	0.83	+0.8
2,634,681	+		GFF2612	0.83	-0.1
2,634,681	+		GFF2612	0.83	+0.2
2,634,681	+		GFF2612	0.83	-3.1
2,634,681	+		GFF2612	0.83	-3.2
2,634,681	+		GFF2612	0.83	-2.6
2,634,681	+		GFF2612	0.83	-2.1
2,634,681	+		GFF2612	0.83	+1.0
2,634,684	-		GFF2612	0.83	+0.5
2,634,689	-		GFF2612	0.84	+0.3
2,634,689	-		GFF2612	0.84	+0.5
2,634,699	+		GFF2612	0.85	-0.7
2,634,702	-		GFF2612	0.85	+0.5
2,634,709	+		GFF2612	0.86	+0.1
2,634,733	+		GFF2612	0.88	+0.4
2,634,736	-		GFF2612	0.89	+0.8
2,634,738	+		GFF2612	0.89	-0.6
2,634,738	+		GFF2612	0.89	+1.4
2,634,738	+		GFF2612	0.89	-1.7
2,634,738	+		GFF2612	0.89	+0.8
2,634,738	+		GFF2612	0.89	+0.7
2,634,738	+		GFF2612	0.89	-1.2
2,634,738	+		GFF2612	0.89	+0.9
2,634,738	+		GFF2612	0.89	-1.0
2,634,738	+		GFF2612	0.89	-0.0
2,634,738	+		GFF2612	0.89	-2.2
2,634,738	+		GFF2612	0.89	-0.8
2,634,741	-		GFF2612	0.89	-0.6
2,634,746	-		GFF2612	0.90	-0.1
2,634,746	-		GFF2612	0.90	+0.5
2,634,746	-		GFF2612	0.90	-0.5
2,634,746	-		GFF2612	0.90	-0.6
2,634,746	-		GFF2612	0.90	-1.2
2,634,746	-		GFF2612	0.90	-0.2
2,634,746	-		GFF2612	0.90	-0.6
2,634,746	-		GFF2612	0.90	-1.0
2,634,746	-		GFF2612	0.90	+0.9
2,634,746	-		GFF2612	0.90	-1.6
2,634,746	-		GFF2612	0.90	-1.9
2,634,746	-		GFF2612	0.90	-1.1
2,634,746	-		GFF2612	0.90	-0.1
2,634,746	-		GFF2612	0.90	-0.8
2,634,746	-		GFF2612	0.90	-1.2
2,634,746	-		GFF2612	0.90	-0.3
2,634,746	-		GFF2612	0.90	+0.1
2,634,746	-		GFF2612	0.90	+1.2
2,634,746	-		GFF2612	0.90	-0.0
2,634,760	+				-1.0
2,634,770	+				-2.2
2,634,770	+				-0.3
2,634,770	+				-0.2
2,634,770	+				-0.1
2,634,778	-				-1.0
2,634,778	-				+0.0
2,634,786	+				+0.0
2,634,786	+				+0.3
2,634,786	+				-1.5
2,634,805	-				-0.7
2,634,810	-				+0.2
2,634,849	+				-2.1
2,634,853	+				-1.6
2,635,323	-		GFF2613	0.85	-0.7
2,635,352	-		GFF2613	0.90	-0.1
2,635,459	+				-1.0
2,635,467	+				-1.6
2,635,467	-				+1.0
2,635,467	-				-1.0
2,635,469	+				-1.5
2,635,469	+				-1.0
2,635,469	+				-0.6
2,635,471	-				-0.7
2,635,477	-				+1.3
2,635,477	-				-1.1
2,635,477	-				-0.9
2,635,477	-				-1.1
2,635,477	-				-0.2
2,635,499	-				-0.8
2,635,524	-		GFF2614	0.11	+0.1
2,635,525	-		GFF2614	0.11	+0.9
2,635,547	-		GFF2614	0.14	+0.9
2,635,561	-		GFF2614	0.15	-0.5
2,635,605	+		GFF2614	0.19	-0.6
2,635,605	+		GFF2614	0.19	+0.1
2,635,607	+		GFF2614	0.19	-0.4
2,635,615	-		GFF2614	0.20	-1.4
2,635,622	+		GFF2614	0.21	+0.5
2,635,622	+		GFF2614	0.21	-0.2
2,635,630	-		GFF2614	0.21	+0.5
2,635,650	+		GFF2614	0.23	-0.2
2,635,658	-		GFF2614	0.24	-1.7
2,635,698	+		GFF2614	0.28	-0.0
2,635,709	+		GFF2614	0.29	-1.8
2,635,718	+		GFF2614	0.30	-2.0
2,635,731	-		GFF2614	0.31	+0.8
2,635,745	+		GFF2614	0.32	+0.6
2,635,746	-		GFF2614	0.33	+0.3
2,635,751	-		GFF2614	0.33	-2.0
2,635,763	+		GFF2614	0.34	-1.1
2,635,810	+		GFF2614	0.39	-1.9
2,635,811	-		GFF2614	0.39	+1.8
2,635,811	-		GFF2614	0.39	-0.2
2,635,816	-		GFF2614	0.39	-1.1
2,635,823	+		GFF2614	0.40	+0.3
2,635,823	+		GFF2614	0.40	+0.6
2,635,828	+		GFF2614	0.40	-0.2
2,635,831	-		GFF2614	0.41	-1.7
2,635,831	-		GFF2614	0.41	-0.6
2,635,831	-		GFF2614	0.41	+0.4
2,635,839	-		GFF2614	0.41	-0.4
2,635,841	+		GFF2614	0.42	-1.2
2,635,849	+		GFF2614	0.42	-0.8
2,635,849	-		GFF2614	0.42	-0.8
2,635,851	+		GFF2614	0.43	+0.3
2,635,860	-		GFF2614	0.43	-0.2
2,635,867	+		GFF2614	0.44	-0.7
2,635,868	+		GFF2614	0.44	+1.0
2,635,870	-		GFF2614	0.44	-1.7
2,635,875	-		GFF2614	0.45	+0.1
2,635,875	-		GFF2614	0.45	-0.4
2,635,875	-		GFF2614	0.45	-1.1
2,635,875	-		GFF2614	0.45	+0.9
2,635,876	+		GFF2614	0.45	+0.5
2,635,910	+		GFF2614	0.48	+0.1
2,635,924	+		GFF2614	0.50	-1.1
2,635,924	+		GFF2614	0.50	-2.6
2,635,924	+		GFF2614	0.50	+1.0
2,635,924	+		GFF2614	0.50	-0.7
2,635,932	-		GFF2614	0.50	+0.0
2,635,932	-		GFF2614	0.50	+0.1
2,635,932	-		GFF2614	0.50	-0.1
2,635,973	-		GFF2614	0.54	-0.7
2,635,973	-		GFF2614	0.54	-1.0
2,635,997	-		GFF2614	0.57	+0.5
2,636,035	+		GFF2614	0.60	-0.2
2,636,038	-		GFF2614	0.61	-0.2
2,636,038	-		GFF2614	0.61	-2.6
2,636,056	+		GFF2614	0.62	+0.1
2,636,060	+		GFF2614	0.63	-0.7
2,636,090	-		GFF2614	0.66	-1.7
2,636,111	-		GFF2614	0.68	-0.4
2,636,135	-		GFF2614	0.70	+0.3
2,636,140	-		GFF2614	0.70	+1.2
2,636,141	-		GFF2614	0.70	-1.0
2,636,175	-		GFF2614	0.74	+0.5
2,636,179	+		GFF2614	0.74	-1.8
2,636,199	-		GFF2614	0.76	-1.2
2,636,199	-		GFF2614	0.76	-0.7
2,636,212	+		GFF2614	0.77	-0.2
2,636,218	+		GFF2614	0.78	-2.5
2,636,226	-		GFF2614	0.79	-0.5
2,636,233	+		GFF2614	0.79	-0.6
2,636,237	-		GFF2614	0.80	+1.2
2,636,244	+		GFF2614	0.80	-0.2
2,636,244	+		GFF2614	0.80	+0.0
2,636,244	+		GFF2614	0.80	+0.8
2,636,244	+		GFF2614	0.80	-2.4
2,636,252	-		GFF2614	0.81	-0.6
2,636,264	+		GFF2614	0.82	-0.5
2,636,269	+		GFF2614	0.83	-0.2
2,636,277	-		GFF2614	0.83	+0.5
2,636,277	-		GFF2614	0.83	-0.1
2,636,277	-		GFF2614	0.83	-2.3
2,636,280	+		GFF2614	0.84	+1.1
2,636,296	-		GFF2614	0.85	+1.0
2,636,313	+		GFF2614	0.87	-1.7
2,636,313	+		GFF2614	0.87	-1.7
2,636,321	+		GFF2614	0.88	-0.2
2,636,321	+		GFF2614	0.88	+0.8
2,636,321	+		GFF2614	0.88	-0.6
2,636,321	+		GFF2614	0.88	-0.4
2,636,334	-		GFF2614	0.89	-1.5
2,636,339	-		GFF2614	0.89	-0.2
2,636,339	-		GFF2614	0.89	+0.9
2,636,343	+		GFF2614	0.90	-1.6
2,636,344	+		GFF2614	0.90	-1.3
2,636,352	+				-0.1
2,636,371	+				-0.2
2,636,374	+				+0.2
2,636,374	+				-0.0
2,636,379	-				-0.7
2,636,381	+				-1.2
2,636,381	+				-1.1
2,636,381	+				+1.1
2,636,381	+				-0.7
2,636,387	-				+1.7
2,636,389	-				-1.7
2,636,389	-				-2.5
2,636,389	-				-0.3
2,636,389	-				-0.5
2,636,389	-				-1.6
2,636,389	-				+1.1
2,636,389	-				-0.5
2,636,401	-				-1.2