Strain Fitness in Sphingobium sp. HT1-2 around GFF2593

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,608,171	-		GFF2591	0.76	-1.6
2,608,186	+		GFF2591	0.78	-1.5
2,608,186	+		GFF2591	0.78	+0.3
2,608,187	+		GFF2591	0.78	+0.1
2,608,219	+		GFF2591	0.81	-1.7
2,608,229	+		GFF2591	0.82	-0.3
2,608,237	-		GFF2591	0.83	-0.2
2,608,237	-		GFF2591	0.83	+1.3
2,608,278	+		GFF2591	0.88	+0.6
2,608,284	+		GFF2591	0.88	-0.7
2,608,302	-				-1.1
2,608,338	-				+0.0
2,608,360	+				+0.1
2,608,360	+				+0.2
2,608,360	+				-0.3
2,608,368	-				+2.3
2,608,459	-				-0.8
2,608,460	-				+0.2
2,608,476	-				+0.6
2,608,476	-				-0.4
2,608,496	+		GFF2592	0.12	+0.0
2,608,501	+		GFF2592	0.12	+1.1
2,608,501	+		GFF2592	0.12	+0.0
2,608,501	+		GFF2592	0.12	-0.7
2,608,501	+		GFF2592	0.12	+0.8
2,608,501	+		GFF2592	0.12	+1.8
2,608,509	-		GFF2592	0.14	-0.4
2,608,514	-		GFF2592	0.14	-0.7
2,608,538	+		GFF2592	0.17	-2.0
2,608,566	-		GFF2592	0.21	+0.8
2,608,568	+		GFF2592	0.21	-0.9
2,608,576	-		GFF2592	0.22	+1.0
2,608,576	-		GFF2592	0.22	-0.4
2,608,580	+		GFF2592	0.23	-0.2
2,608,630	-		GFF2592	0.30	-0.2
2,608,648	-		GFF2592	0.32	+0.5
2,608,667	-		GFF2592	0.35	+0.8
2,608,669	-		GFF2592	0.35	-1.3
2,608,674	+		GFF2592	0.35	-0.2
2,608,674	+		GFF2592	0.35	-0.4
2,608,682	-		GFF2592	0.37	-1.7
2,608,682	-		GFF2592	0.37	-0.6
2,608,682	-		GFF2592	0.37	-1.4
2,608,682	-		GFF2592	0.37	+0.3
2,608,690	+		GFF2592	0.38	-0.1
2,608,691	-		GFF2592	0.38	-0.2
2,608,734	+		GFF2592	0.43	-0.3
2,608,741	+		GFF2592	0.44	-0.1
2,608,742	-		GFF2592	0.44	-1.1
2,608,749	-		GFF2592	0.45	-2.2
2,608,750	+		GFF2592	0.46	-1.1
2,608,794	+		GFF2592	0.51	-0.1
2,608,858	+		GFF2592	0.60	+1.0
2,608,858	+		GFF2592	0.60	-0.7
2,608,858	+		GFF2592	0.60	-1.4
2,608,863	+		GFF2592	0.61	-1.4
2,608,866	-		GFF2592	0.61	+1.1
2,608,866	-		GFF2592	0.61	-2.4
2,608,873	+		GFF2592	0.62	-0.9
2,608,896	-		GFF2592	0.65	-0.5
2,608,909	+		GFF2592	0.67	-1.6
2,608,909	+		GFF2592	0.67	-0.9
2,608,909	+		GFF2592	0.67	+0.5
2,608,909	+		GFF2592	0.67	+0.3
2,608,913	+		GFF2592	0.67	+1.1
2,608,934	-		GFF2592	0.70	-1.7
2,608,947	+		GFF2592	0.72	+0.1
2,608,947	+		GFF2592	0.72	-0.5
2,608,955	-		GFF2592	0.73	-0.1
2,608,955	-		GFF2592	0.73	+0.5
2,608,960	-		GFF2592	0.73	-0.6
2,608,960	-		GFF2592	0.73	+0.8
2,608,976	+		GFF2592	0.76	-0.1
2,608,976	+		GFF2592	0.76	-1.2
2,608,978	+		GFF2592	0.76	-1.7
2,608,984	-		GFF2592	0.77	-2.2
2,608,984	-		GFF2592	0.77	-0.5
2,608,990	+		GFF2592	0.77	-0.6
2,608,990	+		GFF2592	0.77	+1.2
2,608,990	+		GFF2592	0.77	-0.7
2,608,990	+		GFF2592	0.77	-1.7
2,608,998	-		GFF2592	0.78	+0.4
2,609,003	+		GFF2592	0.79	-0.2
2,609,111	-				-1.1
2,609,111	-				-0.2
2,609,117	-				-0.2
2,609,132	-				-1.2
2,609,134	-				-0.2
2,609,163	+				-0.4
2,609,169	-				-0.8
2,609,171	-				-0.7
2,609,178	+				-1.1
2,609,194	+				-0.1
2,609,199	+				+0.6
2,609,199	+				-0.4
2,609,204	+				+0.6
2,609,207	-				-1.5
2,609,207	-				-1.1
2,609,207	-				+0.8
2,609,222	-				-0.5
2,609,249	-		GFF2593	0.13	-0.1
2,609,263	+		GFF2593	0.15	-1.6
2,609,271	-		GFF2593	0.16	-2.2
2,609,272	-		GFF2593	0.17	-1.0
2,609,282	+		GFF2593	0.18	+0.7
2,609,301	-		GFF2593	0.21	-0.8
2,609,304	+		GFF2593	0.21	-1.6
2,609,309	+		GFF2593	0.22	-1.1
2,609,317	-		GFF2593	0.23	-0.8
2,609,322	+		GFF2593	0.24	-1.7
2,609,330	-		GFF2593	0.25	-2.6
2,609,369	-		GFF2593	0.31	-0.7
2,609,375	-		GFF2593	0.32	-0.9
2,609,380	+		GFF2593	0.33	+0.2
2,609,388	-		GFF2593	0.34	-0.6
2,609,388	-		GFF2593	0.34	-0.8
2,609,390	+		GFF2593	0.34	+1.3
2,609,398	-		GFF2593	0.35	+0.4
2,609,404	+		GFF2593	0.36	-1.2
2,609,416	-		GFF2593	0.38	-1.5
2,609,467	+		GFF2593	0.45	-1.0
2,609,475	-		GFF2593	0.47	-1.8
2,609,481	+		GFF2593	0.48	-1.4
2,609,489	-		GFF2593	0.49	+0.9
2,609,498	+		GFF2593	0.50	-1.4
2,609,503	+		GFF2593	0.51	-2.0
2,609,517	-		GFF2593	0.53	-0.2
2,609,518	+		GFF2593	0.53	-0.8
2,609,519	+		GFF2593	0.53	-0.4
2,609,524	+		GFF2593	0.54	-0.8
2,609,532	-		GFF2593	0.55	-1.7
2,609,534	+		GFF2593	0.55	-1.5
2,609,537	-		GFF2593	0.56	-1.8
2,609,542	-		GFF2593	0.57	-1.5
2,609,542	-		GFF2593	0.57	-1.9
2,609,542	-		GFF2593	0.57	-1.1
2,609,542	-		GFF2593	0.57	-1.6
2,609,542	-		GFF2593	0.57	-0.7
2,609,544	+		GFF2593	0.57	-0.2
2,609,544	+		GFF2593	0.57	-0.4
2,609,544	+		GFF2593	0.57	-0.5
2,609,552	-		GFF2593	0.58	+0.8
2,609,567	-		GFF2593	0.60	-1.3
2,609,574	-		GFF2593	0.61	-2.5
2,609,585	+		GFF2593	0.63	-1.6
2,609,590	+		GFF2593	0.64	-2.4
2,609,590	+		GFF2593	0.64	+0.2
2,609,590	+		GFF2593	0.64	-1.4
2,609,590	+		GFF2593	0.64	-1.5
2,609,590	+		GFF2593	0.64	-1.5
2,609,593	-		GFF2593	0.64	-0.5
2,609,593	-		GFF2593	0.64	-0.7
2,609,593	-		GFF2593	0.64	-1.2
2,609,593	-		GFF2593	0.64	-0.4
2,609,595	-		GFF2593	0.64	-1.2
2,609,609	+		GFF2593	0.67	+0.3
2,609,646	+		GFF2593	0.72	-3.2
2,609,646	-		GFF2593	0.72	-1.7
2,609,654	-		GFF2593	0.73	-0.9
2,609,668	+		GFF2593	0.75	+0.1
2,609,673	+		GFF2593	0.76	+0.2
2,609,686	-		GFF2593	0.78	-0.7
2,609,686	-		GFF2593	0.78	-0.2
2,609,709	+		GFF2593	0.81	-1.9
2,609,719	+		GFF2593	0.83	+0.4
2,609,722	-		GFF2593	0.83	-1.5
2,609,727	-		GFF2593	0.84	-1.7
2,609,734	+		GFF2593	0.85	-1.7
2,609,790	+				+1.2
2,609,800	+				-1.6
2,609,808	-				-0.4
2,609,817	+				+0.1
2,609,825	+				+0.7
2,609,825	+				-1.6
2,609,825	+				-1.4
2,609,825	+				+0.2
2,609,825	+				-0.1
2,609,825	+				-2.7
2,609,828	-				-1.7
2,609,830	+				+0.1
2,609,833	-				+0.8
2,609,833	-				-1.5
2,609,836	+				-0.5
2,609,836	+				-0.1
2,609,838	-				-0.5
2,609,838	-				+0.4
2,609,838	-				-0.4
2,609,841	+				+0.6
2,609,841	+				+0.3
2,609,848	+				+1.8
2,609,848	-				+0.0
2,609,849	-				+0.2
2,609,849	-				+0.4
2,609,858	+				-1.5
2,609,862	+				-0.2
2,609,881	+				-1.6
2,609,900	+				-0.2
2,609,924	-				+0.0
2,609,947	+				-0.5
2,609,949	+				+0.8
2,609,952	+				+0.7
2,609,995	+				-1.0
2,610,014	-		GFF2594	0.11	-2.1
2,610,016	+		GFF2594	0.11	+0.5
2,610,025	-		GFF2594	0.12	+0.5
2,610,030	-		GFF2594	0.12	-2.0
2,610,035	+		GFF2594	0.12	-0.9
2,610,040	+		GFF2594	0.13	-1.9
2,610,048	-		GFF2594	0.13	-1.4
2,610,048	-		GFF2594	0.13	-1.9
2,610,048	-		GFF2594	0.13	+1.0
2,610,055	+		GFF2594	0.13	-1.2
2,610,055	+		GFF2594	0.13	-0.2
2,610,080	+		GFF2594	0.15	+0.3
2,610,090	+		GFF2594	0.15	-0.2
2,610,098	-		GFF2594	0.16	-0.2
2,610,105	+		GFF2594	0.16	-0.6
2,610,108	-		GFF2594	0.17	-0.2
2,610,124	-		GFF2594	0.17	-1.4
2,610,125	+		GFF2594	0.18	-0.6
2,610,126	-		GFF2594	0.18	+0.3
2,610,126	-		GFF2594	0.18	-1.0
2,610,126	-		GFF2594	0.18	-1.3
2,610,126	-		GFF2594	0.18	-0.1
2,610,126	-		GFF2594	0.18	+0.1
2,610,207	+		GFF2594	0.22	-0.4
2,610,207	+		GFF2594	0.22	+0.4
2,610,210	-		GFF2594	0.23	-0.1
2,610,215	-		GFF2594	0.23	-0.2
2,610,235	+		GFF2594	0.24	+0.0
2,610,235	-		GFF2594	0.24	-0.9
2,610,238	-		GFF2594	0.24	-1.7
2,610,243	-		GFF2594	0.24	-0.9
2,610,267	+		GFF2594	0.26	-0.3
2,610,267	+		GFF2594	0.26	-1.7
2,610,287	+		GFF2594	0.27	-1.8
2,610,309	+		GFF2594	0.28	-1.2
2,610,309	+		GFF2594	0.28	+0.4
2,610,309	+		GFF2594	0.28	-0.4
2,610,309	+		GFF2594	0.28	-0.2
2,610,309	+		GFF2594	0.28	-1.1
2,610,309	+		GFF2594	0.28	-1.4
2,610,309	+		GFF2594	0.28	-2.2
2,610,309	+		GFF2594	0.28	-1.1
2,610,309	+		GFF2594	0.28	-2.4
2,610,309	+		GFF2594	0.28	+0.6
2,610,309	+		GFF2594	0.28	+0.0
2,610,309	+		GFF2594	0.28	-0.5
2,610,317	-		GFF2594	0.29	-0.6
2,610,317	-		GFF2594	0.29	-1.5
2,610,317	-		GFF2594	0.29	+0.4
2,610,317	-		GFF2594	0.29	+0.2
2,610,317	-		GFF2594	0.29	-1.3
2,610,317	-		GFF2594	0.29	-2.9
2,610,327	+		GFF2594	0.29	-1.1
2,610,335	-		GFF2594	0.30	-1.7
2,610,360	+		GFF2594	0.31	-1.2
2,610,360	+		GFF2594	0.31	-1.1
2,610,374	-		GFF2594	0.32	-0.2
2,610,394	+		GFF2594	0.33	-1.2
2,610,400	+		GFF2594	0.34	-0.1
2,610,402	+		GFF2594	0.34	-0.1
2,610,433	+		GFF2594	0.36	-1.7
2,610,438	+		GFF2594	0.36	-0.6
2,610,438	+		GFF2594	0.36	-1.5
2,610,438	+		GFF2594	0.36	-1.5
2,610,441	-		GFF2594	0.36	-1.8
2,610,446	-		GFF2594	0.36	-0.3
2,610,448	+		GFF2594	0.37	-1.1
2,610,486	+		GFF2594	0.39	-3.5
2,610,527	+		GFF2594	0.41	-0.4
2,610,535	-		GFF2594	0.42	-0.7
2,610,540	+		GFF2594	0.42	-1.7
2,610,545	-		GFF2594	0.42	-1.1
2,610,557	+		GFF2594	0.43	-2.7
2,610,557	+		GFF2594	0.43	-0.2
2,610,557	+		GFF2594	0.43	-0.8
2,610,557	+		GFF2594	0.43	+0.6
2,610,557	+		GFF2594	0.43	-0.9
2,610,557	+		GFF2594	0.43	-1.4
2,610,557	+		GFF2594	0.43	-0.9
2,610,565	-		GFF2594	0.43	-1.2
2,610,565	-		GFF2594	0.43	-1.2
2,610,574	+		GFF2594	0.44	-1.2
2,610,583	+		GFF2594	0.44	-1.4
2,610,597	-		GFF2594	0.45	+0.9
2,610,606	+		GFF2594	0.46	-1.2
2,610,613	+		GFF2594	0.46	-1.1
2,610,614	-		GFF2594	0.46	-0.3
2,610,617	+		GFF2594	0.46	-0.7
2,610,625	-		GFF2594	0.47	+0.3
2,610,649	+		GFF2594	0.48	-0.6
2,610,651	+		GFF2594	0.48	-0.7
2,610,654	+		GFF2594	0.49	-0.6
2,610,670	-		GFF2594	0.50	+0.3
2,610,688	+		GFF2594	0.51	-0.1
2,610,697	-		GFF2594	0.51	-1.7
2,610,699	+		GFF2594	0.51	-1.1
2,610,705	-		GFF2594	0.52	+0.2
2,610,732	+		GFF2594	0.53	-1.0
2,610,732	-		GFF2594	0.53	+0.3
2,610,748	+		GFF2594	0.54	-2.1
2,610,757	-		GFF2594	0.55	-1.1
2,610,758	+		GFF2594	0.55	-2.2
2,610,758	+		GFF2594	0.55	-1.4
2,610,782	-		GFF2594	0.56	-1.7
2,610,784	-		GFF2594	0.56	-1.4
2,610,784	-		GFF2594	0.56	-1.2
2,610,785	+		GFF2594	0.56	-1.6
2,610,788	-		GFF2594	0.56	-2.1
2,610,795	+		GFF2594	0.57	-0.6
2,610,805	-		GFF2594	0.57	-0.1