Strain Fitness in Sphingobium sp. HT1-2 around GFF2580

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,595,341	-		GFF2578	0.89	-1.0
2,595,343	+		GFF2578	0.89	+1.1
2,595,343	+		GFF2578	0.89	+1.0
2,595,343	+		GFF2578	0.89	-1.5
2,595,343	+		GFF2578	0.89	+0.2
2,595,351	-		GFF2578	0.89	-0.2
2,595,351	-		GFF2578	0.89	-1.1
2,595,371	-				-0.8
2,595,371	-				+1.0
2,595,371	-				-1.1
2,595,375	+				-1.0
2,595,375	+				+0.3
2,595,375	+				-1.0
2,595,375	+				-1.4
2,595,375	+				+0.0
2,595,383	-				-0.1
2,595,383	-				-1.3
2,595,383	-				+0.0
2,595,383	-				-0.1
2,595,383	-				+0.5
2,595,385	+				-0.4
2,595,395	+				+0.0
2,595,423	-				-1.1
2,595,439	+				-0.7
2,595,439	-				-1.0
2,595,442	+				-0.2
2,595,449	+				-1.3
2,595,458	-				-1.2
2,595,471	+				-1.3
2,595,485	+				-2.1
2,595,501	-				-0.3
2,595,525	+				-0.8
2,595,533	-				-0.0
2,595,548	-				+0.6
2,595,554	+				-0.2
2,595,564	+				-0.3
2,595,593	+				+1.1
2,595,601	+				-1.0
2,595,601	-				-0.6
2,595,693	+				+0.7
2,595,693	+				-1.3
2,595,701	-				-0.1
2,595,701	-				+0.4
2,595,703	-				-1.4
2,595,715	+				-0.5
2,595,723	-				-1.2
2,595,723	-				-0.4
2,595,728	-				+0.3
2,595,728	-				-2.5
2,595,741	+				+0.5
2,595,796	+				+0.1
2,595,804	-				+0.6
2,596,899	+				+0.9
2,596,908	-				+0.1
2,596,958	+				-0.6
2,596,982	+				-1.1
2,596,990	-				-0.3
2,596,990	-				+1.1
2,596,993	+				-2.5
2,596,997	+				-2.2
2,596,997	+				-2.2
2,596,997	+				-2.7
2,596,997	+				-0.2
2,596,997	+				+0.0
2,596,997	+				-0.2
2,596,997	+				+1.0
2,596,997	+				+0.4
2,596,997	+				+0.4
2,596,997	+				-0.3
2,596,997	+				+0.0
2,596,997	+				-2.7
2,596,997	+				-1.3
2,596,998	+				-0.7
2,597,003	+				+0.2
2,597,003	+				-2.5
2,597,005	-				-1.8
2,597,005	-				-0.1
2,597,005	-				+0.0
2,597,005	-				-1.7
2,597,005	-				-1.0
2,597,005	-				+0.9
2,597,005	-				+1.1
2,597,005	-				+0.6
2,597,013	-				+0.8
2,597,020	-				-0.6
2,597,020	-				-0.3
2,597,022	+				-1.0
2,597,022	+				-1.8
2,597,022	+				+1.0
2,597,030	-		GFF2581	0.11	+0.9
2,597,030	-		GFF2581	0.11	-0.6
2,597,030	-		GFF2581	0.11	+1.1
2,597,030	-		GFF2581	0.11	-0.4
2,597,030	-		GFF2581	0.11	-0.1
2,597,030	-		GFF2581	0.11	-1.2
2,597,031	+		GFF2581	0.11	-0.8
2,597,047	+		GFF2581	0.13	-1.8
2,597,047	+		GFF2581	0.13	-0.1
2,597,047	+		GFF2581	0.13	-0.6
2,597,047	+		GFF2581	0.13	-0.5
2,597,053	-		GFF2581	0.14	+0.3
2,597,055	-		GFF2581	0.14	-1.1
2,597,055	-		GFF2581	0.14	+0.7
2,597,055	-		GFF2581	0.14	-0.4
2,597,055	-		GFF2581	0.14	-2.2
2,597,087	-		GFF2581	0.18	+1.1
2,597,106	-		GFF2581	0.20	-1.8
2,597,136	+		GFF2581	0.24	-0.1
2,597,139	-		GFF2581	0.25	-0.5
2,597,157	+		GFF2581	0.27	-1.1
2,597,157	+		GFF2581	0.27	-1.6
2,597,157	+		GFF2581	0.27	+0.5
2,597,157	+		GFF2581	0.27	+0.5
2,597,157	+		GFF2581	0.27	+0.2
2,597,165	-		GFF2581	0.28	-0.1
2,597,165	-		GFF2581	0.28	-0.1
2,597,165	-		GFF2581	0.28	-0.8
2,597,165	-		GFF2581	0.28	-1.8
2,597,165	-		GFF2581	0.28	-0.4
2,597,167	+		GFF2581	0.28	-1.1
2,597,195	+		GFF2581	0.32	+1.0
2,597,195	+		GFF2581	0.32	-0.1
2,597,195	+		GFF2581	0.32	+0.3
2,597,241	+		GFF2581	0.38	-1.4
2,597,243	-		GFF2581	0.38	+1.2
2,597,248	+		GFF2581	0.38	-1.1
2,597,256	-		GFF2581	0.39	-0.2
2,597,294	+		GFF2581	0.44	-0.7
2,597,295	+		GFF2581	0.44	-0.6
2,597,295	+		GFF2581	0.44	-1.3
2,597,295	+		GFF2581	0.44	-0.4
2,597,295	+		GFF2581	0.44	-1.5
2,597,303	-		GFF2581	0.45	+0.8
2,597,303	-		GFF2581	0.45	-0.3
2,597,311	+		GFF2581	0.46	+0.1
2,597,321	+		GFF2581	0.48	-0.4
2,597,321	+		GFF2581	0.48	-0.1
2,597,321	+		GFF2581	0.48	+0.0
2,597,321	+		GFF2581	0.48	-0.6
2,597,321	+		GFF2581	0.48	-0.1
2,597,321	+		GFF2581	0.48	+0.1
2,597,324	-		GFF2581	0.48	-2.3
2,597,329	-		GFF2581	0.49	-1.5
2,597,329	-		GFF2581	0.49	-0.5
2,597,329	-		GFF2581	0.49	+0.0
2,597,329	-		GFF2581	0.49	-0.5
2,597,329	-		GFF2581	0.49	-0.9
2,597,329	-		GFF2581	0.49	+1.4
2,597,329	-		GFF2581	0.49	-0.7
2,597,329	-		GFF2581	0.49	+1.3
2,597,329	-		GFF2581	0.49	+0.2
2,597,329	-		GFF2581	0.49	-0.5
2,597,329	-		GFF2581	0.49	-1.4
2,597,334	-		GFF2581	0.49	+0.7
2,597,339	-		GFF2581	0.50	-0.2
2,597,339	-		GFF2581	0.50	+0.7
2,597,339	-		GFF2581	0.50	+0.5
2,597,351	+		GFF2581	0.51	-1.4
2,597,359	-		GFF2581	0.52	+1.0
2,597,377	+		GFF2581	0.55	-2.0
2,597,403	-		GFF2581	0.58	-1.0
2,597,444	+		GFF2581	0.63	-0.9
2,597,447	-		GFF2581	0.64	-0.6
2,597,449	+		GFF2581	0.64	-1.1
2,597,449	+		GFF2581	0.64	-1.3
2,597,449	+		GFF2581	0.64	+0.7
2,597,452	-		GFF2581	0.64	+0.1
2,597,452	-		GFF2581	0.64	-0.3
2,597,452	-		GFF2581	0.64	-1.4
2,597,452	-		GFF2581	0.64	-0.6
2,597,452	-		GFF2581	0.64	+0.9
2,597,452	-		GFF2581	0.64	-0.2
2,597,457	-		GFF2581	0.65	-0.5
2,597,457	-		GFF2581	0.65	+0.5
2,597,457	-		GFF2581	0.65	+0.3
2,597,457	-		GFF2581	0.65	+0.3
2,597,506	+		GFF2581	0.71	-0.8
2,597,509	-		GFF2581	0.71	-1.8
2,597,514	-		GFF2581	0.72	+0.3
2,597,514	-		GFF2581	0.72	+0.8
2,597,519	-		GFF2581	0.73	-2.1
2,597,519	-		GFF2581	0.73	-0.7
2,597,523	-		GFF2581	0.73	+0.6
2,597,533	-		GFF2581	0.74	+0.9
2,597,537	+		GFF2581	0.75	+0.2
2,597,537	+		GFF2581	0.75	-1.3
2,597,537	+		GFF2581	0.75	+0.1
2,597,537	+		GFF2581	0.75	-0.2
2,597,537	+		GFF2581	0.75	+0.3
2,597,539	+		GFF2581	0.75	-0.4
2,597,545	-		GFF2581	0.76	+0.9
2,597,545	-		GFF2581	0.76	-0.1
2,597,545	-		GFF2581	0.76	+0.9
2,597,547	-		GFF2581	0.76	+0.5
2,597,547	-		GFF2581	0.76	-0.0
2,597,570	+		GFF2581	0.79	-0.7
2,597,573	-		GFF2581	0.79	-0.2
2,597,581	+		GFF2581	0.80	+1.0
2,597,581	+		GFF2581	0.80	-1.7
2,597,581	+		GFF2581	0.80	+1.2
2,597,581	+		GFF2581	0.80	-0.8
2,597,581	+		GFF2581	0.80	-0.4
2,597,581	+		GFF2581	0.80	-0.7
2,597,581	+		GFF2581	0.80	+0.4
2,597,581	+		GFF2581	0.80	-0.3
2,597,581	+		GFF2581	0.80	-0.8
2,597,581	+		GFF2581	0.80	-0.3
2,597,581	+		GFF2581	0.80	-1.3
2,597,581	+		GFF2581	0.80	+0.0
2,597,581	+		GFF2581	0.80	-2.6
2,597,581	+		GFF2581	0.80	-0.8
2,597,581	+		GFF2581	0.80	+0.5
2,597,581	+		GFF2581	0.80	-0.1
2,597,581	+		GFF2581	0.80	+0.6
2,597,581	+		GFF2581	0.80	-0.8
2,597,586	+		GFF2581	0.81	-1.1
2,597,589	-		GFF2581	0.81	-0.3
2,597,589	-		GFF2581	0.81	+1.3
2,597,589	-		GFF2581	0.81	+1.0
2,597,589	-		GFF2581	0.81	-0.2
2,597,589	-		GFF2581	0.81	-0.1
2,597,589	-		GFF2581	0.81	+0.5
2,597,589	-		GFF2581	0.81	-1.4
2,597,589	-		GFF2581	0.81	+0.7
2,597,589	-		GFF2581	0.81	-1.4
2,597,589	-		GFF2581	0.81	+0.9
2,597,594	-		GFF2581	0.82	+0.5
2,597,601	+		GFF2581	0.83	-2.1
2,597,611	+		GFF2581	0.84	-0.7
2,597,619	-		GFF2581	0.85	-0.9
2,597,619	-		GFF2581	0.85	-0.6
2,597,626	+		GFF2581	0.86	+0.0
2,597,629	+		GFF2581	0.86	-1.3
2,597,634	+		GFF2581	0.87	+0.2
2,597,642	-		GFF2581	0.88	+0.8
2,597,642	-		GFF2581	0.88	+0.3
2,597,643	-		GFF2581	0.88	+0.4
2,597,647	-		GFF2581	0.89	+0.8
2,597,650	-		GFF2581	0.89	+0.5
2,597,665	-				-1.5
2,597,682	+				-1.4
2,597,682	+				-0.2
2,597,703	+				-2.5
2,597,719	+				-0.5
2,597,738	-				+0.8
2,597,738	-				-0.6
2,597,738	-				-0.7
2,597,738	-				-0.8
2,597,765	+		GFF2582	0.10	+0.8
2,597,773	-		GFF2582	0.12	+0.5
2,597,781	-		GFF2582	0.15	-1.9
2,597,787	+		GFF2582	0.17	-0.9
2,597,809	+		GFF2582	0.23	-0.1