Strain Fitness in Sphingobium sp. HT1-2 around GFF2517

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,537,794	+		GFF2515	0.65	-0.1
2,537,813	+		GFF2515	0.66	-1.7
2,537,834	+		GFF2515	0.68	-0.5
2,537,836	+		GFF2515	0.68	-2.1
2,537,836	+		GFF2515	0.68	+1.2
2,537,836	+		GFF2515	0.68	-0.9
2,537,844	-		GFF2515	0.69	-0.9
2,537,844	-		GFF2515	0.69	-3.3
2,537,844	-		GFF2515	0.69	+0.1
2,537,844	-		GFF2515	0.69	-0.3
2,537,869	-		GFF2515	0.71	-0.0
2,537,887	+		GFF2515	0.72	-0.1
2,537,887	+		GFF2515	0.72	+0.0
2,537,887	+		GFF2515	0.72	+0.3
2,537,895	-		GFF2515	0.73	-1.9
2,537,895	-		GFF2515	0.73	+0.2
2,537,907	+		GFF2515	0.74	-0.2
2,537,923	-		GFF2515	0.75	+0.4
2,537,932	+		GFF2515	0.76	+0.2
2,537,942	-		GFF2515	0.76	-0.6
2,537,957	+		GFF2515	0.78	+0.8
2,537,978	-		GFF2515	0.79	-1.4
2,537,978	-		GFF2515	0.79	-0.1
2,537,978	-		GFF2515	0.79	-0.9
2,537,992	-		GFF2515	0.80	-0.0
2,538,014	+		GFF2515	0.82	+1.2
2,538,014	+		GFF2515	0.82	+0.0
2,538,021	+		GFF2515	0.83	-1.2
2,538,021	+		GFF2515	0.83	+0.5
2,538,026	+		GFF2515	0.83	+0.1
2,538,029	-		GFF2515	0.83	+0.1
2,538,029	-		GFF2515	0.83	-0.7
2,538,029	-		GFF2515	0.83	-0.3
2,538,036	+		GFF2515	0.84	+0.8
2,538,041	+		GFF2515	0.84	+0.8
2,538,044	-		GFF2515	0.84	+0.3
2,538,044	-		GFF2515	0.84	-0.2
2,538,044	-		GFF2515	0.84	-0.8
2,538,046	+		GFF2515	0.84	-1.1
2,538,058	-		GFF2515	0.85	+0.3
2,538,062	+		GFF2515	0.86	-0.7
2,538,062	+		GFF2515	0.86	-0.3
2,538,062	+		GFF2515	0.86	+0.0
2,538,070	-		GFF2515	0.86	+0.2
2,538,070	-		GFF2515	0.86	-0.7
2,538,080	-		GFF2515	0.87	-1.2
2,538,116	-		GFF2515	0.90	-0.2
2,538,124	-				+0.2
2,538,136	-				-2.3
2,538,136	-				-0.8
2,538,148	+				-1.1
2,538,166	-				+0.8
2,538,167	+				+0.0
2,538,167	+				-0.1
2,538,176	+				-1.9
2,538,181	+				+0.6
2,538,184	+				-1.8
2,538,185	+				+0.5
2,538,193	-				+0.6
2,538,193	-				-0.1
2,538,253	+				-2.2
2,538,253	+				-1.9
2,538,261	-				-0.2
2,538,261	-				-1.8
2,538,289	-				-1.0
2,538,299	+				+1.5
2,538,299	+				+0.3
2,538,299	+				-0.9
2,538,299	+				-0.2
2,538,299	+				+1.3
2,538,299	+				-0.4
2,538,299	+				-0.4
2,538,299	+				-0.1
2,538,299	+				+0.4
2,538,299	-				-0.4
2,538,300	+				+0.5
2,538,304	+				-1.4
2,538,307	-				+0.5
2,538,307	-				+0.0
2,538,307	-				-1.4
2,538,307	-				-1.4
2,538,307	-				-2.3
2,538,307	-				+1.3
2,538,307	-				+0.5
2,538,307	-				+1.3
2,538,307	-				+0.3
2,538,319	-				+0.1
2,538,356	+				-0.1
2,538,361	-				-0.0
2,538,375	-				-0.0
2,538,399	-				-0.4
2,538,425	+				-0.2
2,538,438	+				+0.6
2,538,438	+				+0.1
2,538,438	+				-0.4
2,538,438	+				-1.7
2,538,438	+				+0.1
2,538,438	+				-1.5
2,538,438	+				-0.5
2,538,438	+				-1.5
2,538,438	+				+1.2
2,538,438	+				-1.9
2,538,446	-				+0.2
2,538,446	-				-1.1
2,538,446	-				-0.2
2,538,446	-				-0.2
2,538,446	-				-0.1
2,538,446	-				-1.5
2,538,448	+				+0.5
2,538,448	+				-0.8
2,538,448	+				-0.5
2,538,448	+				+0.1
2,538,453	+				+0.1
2,538,456	-				+0.8
2,538,456	-				-0.1
2,538,456	-				-1.2
2,538,456	-				+0.7
2,538,456	-				-1.0
2,538,456	-				-0.6
2,538,456	-				+0.7
2,538,489	-		GFF2516	0.19	-1.8
2,538,491	-		GFF2516	0.19	-0.7
2,538,496	+		GFF2516	0.21	-0.5
2,538,515	-		GFF2516	0.26	-0.0
2,538,526	-		GFF2516	0.29	+0.0
2,538,554	-		GFF2516	0.37	-0.7
2,538,569	-		GFF2516	0.41	+0.4
2,538,569	-		GFF2516	0.41	+0.1
2,538,586	+		GFF2516	0.46	+0.6
2,538,587	+		GFF2516	0.46	-2.0
2,538,610	+		GFF2516	0.53	+1.5
2,538,631	-		GFF2516	0.58	+0.6
2,538,667	+		GFF2516	0.68	-0.4
2,538,688	+		GFF2516	0.74	+0.3
2,538,696	-		GFF2516	0.76	-0.3
2,538,698	+		GFF2516	0.77	-1.3
2,538,700	+		GFF2516	0.78	+0.9
2,538,710	+		GFF2516	0.80	-0.4
2,538,717	+		GFF2516	0.82	+0.0
2,538,718	-		GFF2516	0.82	-0.1
2,538,719	-		GFF2516	0.83	+0.2
2,538,725	-		GFF2516	0.84	-2.0
2,538,787	-				+0.5
2,538,817	+		GFF2517	0.30	-0.3
2,538,830	+		GFF2517	0.47	+1.1
2,538,846	-		GFF2517	0.68	-0.8
2,538,860	-		GFF2517	0.86	-0.5
2,538,862	+		GFF2517	0.88	-0.9
2,538,862	+		GFF2517	0.88	-0.4
2,538,869	+				-1.9
2,538,919	+				-1.6
2,538,924	+				+0.4
2,538,924	+				-1.1
2,538,924	+				-0.1
2,538,932	-				+0.2
2,538,932	-				+0.3
2,538,934	-				+0.3
2,538,962	-				-1.0
2,538,963	-				+0.1
2,538,965	+				+0.2
2,538,965	+				-0.2
2,538,979	+				+0.1
2,538,981	+				-1.6
2,538,984	+				-0.4
2,539,001	-				-0.4
2,539,003	+				-1.1
2,539,040	+				+1.5
2,539,040	+				-1.2
2,539,040	+				-0.2
2,539,040	+				-0.2
2,539,040	+				-1.7
2,539,040	+				-0.4
2,539,040	+				-1.6
2,539,040	+				-0.5
2,539,040	+				-1.2
2,539,040	+				+0.8
2,539,040	+				-0.1
2,539,040	+				-0.1
2,539,040	+				-2.0
2,539,040	+				+1.4
2,539,040	+				-1.7
2,539,040	+				+1.3
2,539,040	+				+1.3
2,539,040	+				+0.3
2,539,048	-				-0.8
2,539,048	-				+0.5
2,539,048	-				+0.0
2,539,048	-				+1.1
2,539,048	-				+0.4
2,539,048	-				+0.6
2,539,048	-				+1.5
2,539,048	-				-0.7
2,539,048	-				-0.2
2,539,048	-				+0.3
2,539,048	-				-1.9
2,539,048	-				+0.1
2,539,048	-				+1.4
2,539,048	-				-0.2
2,539,048	-				-1.0
2,539,048	-				-0.5
2,539,064	+				+0.9
2,539,082	-				+0.1
2,539,095	+				+0.0
2,539,107	+				-1.7
2,539,121	-		GFF2518	0.13	+0.9
2,539,122	+		GFF2518	0.13	-0.7
2,539,123	+		GFF2518	0.13	+0.1
2,539,123	+		GFF2518	0.13	-0.4
2,539,123	+		GFF2518	0.13	-1.2
2,539,123	+		GFF2518	0.13	-0.2
2,539,123	+		GFF2518	0.13	-0.3
2,539,125	+		GFF2518	0.14	+0.1
2,539,130	-		GFF2518	0.15	+0.3
2,539,130	-		GFF2518	0.15	-0.7
2,539,131	-		GFF2518	0.15	-1.2
2,539,131	-		GFF2518	0.15	-0.5
2,539,131	-		GFF2518	0.15	+1.2
2,539,133	-		GFF2518	0.16	-1.6
2,539,146	+		GFF2518	0.19	-0.2
2,539,168	+		GFF2518	0.24	-0.5
2,539,169	-		GFF2518	0.24	-1.5
2,539,176	+		GFF2518	0.26	+0.8
2,539,177	+		GFF2518	0.26	+0.6
2,539,177	+		GFF2518	0.26	-0.6
2,539,177	+		GFF2518	0.26	+0.6
2,539,182	+		GFF2518	0.28	-1.1
2,539,185	-		GFF2518	0.28	+0.6
2,539,185	-		GFF2518	0.28	-1.0
2,539,193	+		GFF2518	0.30	-0.1
2,539,200	-		GFF2518	0.32	+1.3
2,539,207	+		GFF2518	0.34	-2.0
2,539,209	+		GFF2518	0.34	+0.8
2,539,222	+		GFF2518	0.37	+0.0
2,539,238	+		GFF2518	0.41	+0.5
2,539,238	-		GFF2518	0.41	+0.9
2,539,258	+		GFF2518	0.46	-0.7
2,539,258	+		GFF2518	0.46	+0.3
2,539,265	-		GFF2518	0.48	+0.1
2,539,265	-		GFF2518	0.48	+0.5
2,539,265	-		GFF2518	0.48	+0.8
2,539,265	-		GFF2518	0.48	+0.1
2,539,266	-		GFF2518	0.48	-1.1
2,539,266	-		GFF2518	0.48	-2.0
2,539,268	+		GFF2518	0.48	-0.5
2,539,268	+		GFF2518	0.48	+0.6
2,539,270	-		GFF2518	0.49	+0.8
2,539,271	+		GFF2518	0.49	-1.1
2,539,303	+		GFF2518	0.57	+0.6
2,539,303	+		GFF2518	0.57	-1.5
2,539,303	+		GFF2518	0.57	-0.3
2,539,303	+		GFF2518	0.57	+0.1
2,539,303	+		GFF2518	0.57	+0.7
2,539,304	-		GFF2518	0.57	-1.2
2,539,304	-		GFF2518	0.57	-1.4
2,539,311	-		GFF2518	0.59	-1.4
2,539,311	-		GFF2518	0.59	-0.5
2,539,311	-		GFF2518	0.59	-2.8
2,539,311	-		GFF2518	0.59	-1.5
2,539,313	+		GFF2518	0.59	-2.2
2,539,318	+		GFF2518	0.60	-0.7
2,539,318	+		GFF2518	0.60	-0.2
2,539,318	+		GFF2518	0.60	+0.3
2,539,318	+		GFF2518	0.60	+1.1
2,539,318	+		GFF2518	0.60	-1.8
2,539,318	+		GFF2518	0.60	+0.8
2,539,318	+		GFF2518	0.60	-1.0
2,539,318	+		GFF2518	0.60	-0.5
2,539,318	+		GFF2518	0.60	-0.4
2,539,318	+		GFF2518	0.60	+0.1
2,539,318	+		GFF2518	0.60	-0.0
2,539,325	+		GFF2518	0.62	+0.6
2,539,326	+		GFF2518	0.62	-0.4
2,539,326	-		GFF2518	0.62	-1.5
2,539,326	-		GFF2518	0.62	-1.7
2,539,326	-		GFF2518	0.62	-0.5
2,539,326	-		GFF2518	0.62	-2.9
2,539,326	-		GFF2518	0.62	-1.2
2,539,334	-		GFF2518	0.64	-1.9
2,539,334	-		GFF2518	0.64	-1.2
2,539,364	-		GFF2518	0.71	-1.5
2,539,385	+		GFF2518	0.77	-0.1
2,539,464	+				-1.1
2,539,532	-				-2.3
2,539,541	+				+0.9
2,539,612	-		GFF2519	0.14	-1.6
2,539,648	-		GFF2519	0.21	-2.1
2,539,648	-		GFF2519	0.21	-0.5
2,539,655	+		GFF2519	0.22	-3.2
2,539,655	+		GFF2519	0.22	+0.0
2,539,655	+		GFF2519	0.22	-0.1
2,539,663	-		GFF2519	0.23	-1.1
2,539,672	+		GFF2519	0.25	-2.4
2,539,672	+		GFF2519	0.25	-0.2
2,539,672	+		GFF2519	0.25	-0.8
2,539,672	+		GFF2519	0.25	+0.2
2,539,680	-		GFF2519	0.26	-0.8
2,539,680	-		GFF2519	0.26	-1.6
2,539,680	-		GFF2519	0.26	-1.7
2,539,682	+		GFF2519	0.26	-1.9
2,539,722	+		GFF2519	0.33	-1.7
2,539,723	+		GFF2519	0.33	-2.1
2,539,732	-		GFF2519	0.35	+0.9
2,539,755	+		GFF2519	0.39	-0.3
2,539,755	-		GFF2519	0.39	-0.8
2,539,765	-		GFF2519	0.41	-1.0
2,539,780	+		GFF2519	0.43	+0.4
2,539,780	+		GFF2519	0.43	-0.1
2,539,788	+		GFF2519	0.44	-0.5
2,539,789	-		GFF2519	0.45	-0.9
2,539,789	-		GFF2519	0.45	-2.1
2,539,815	+		GFF2519	0.49	-0.1
2,539,823	-		GFF2519	0.50	-0.5
2,539,825	+		GFF2519	0.51	+0.4
2,539,825	+		GFF2519	0.51	-1.6
2,539,833	-		GFF2519	0.52	+1.2
2,539,833	-		GFF2519	0.52	-1.3
2,539,843	-		GFF2519	0.54	-0.1