Strain Fitness in Sphingobium sp. HT1-2 around GFF2508

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,530,805	+		GFF2506	0.45	-1.4
2,530,810	+		GFF2506	0.46	-0.6
2,530,816	+		GFF2506	0.47	+1.4
2,530,818	-		GFF2506	0.47	-0.0
2,530,838	+		GFF2506	0.50	-0.4
2,530,850	+		GFF2506	0.51	-2.1
2,530,858	-		GFF2506	0.53	+0.1
2,530,883	+		GFF2506	0.56	+0.1
2,530,883	+		GFF2506	0.56	-0.8
2,530,883	+		GFF2506	0.56	+0.1
2,530,883	+		GFF2506	0.56	+0.3
2,530,883	+		GFF2506	0.56	-1.4
2,530,883	+		GFF2506	0.56	+1.1
2,530,884	+		GFF2506	0.56	+1.0
2,530,891	-		GFF2506	0.57	-1.6
2,530,891	-		GFF2506	0.57	+0.3
2,530,892	-		GFF2506	0.57	-0.2
2,530,892	-		GFF2506	0.57	+0.1
2,530,892	-		GFF2506	0.57	-0.1
2,530,892	-		GFF2506	0.57	-1.1
2,530,912	+		GFF2506	0.60	+0.9
2,530,912	+		GFF2506	0.60	-1.1
2,530,912	+		GFF2506	0.60	+0.4
2,530,912	+		GFF2506	0.60	+0.1
2,530,912	+		GFF2506	0.60	-0.2
2,530,912	+		GFF2506	0.60	-0.2
2,530,912	+		GFF2506	0.60	+0.1
2,530,912	+		GFF2506	0.60	+1.5
2,530,912	+		GFF2506	0.60	+1.5
2,530,912	+		GFF2506	0.60	+1.9
2,530,912	+		GFF2506	0.60	-0.6
2,530,912	+		GFF2506	0.60	-1.8
2,530,912	+		GFF2506	0.60	-0.4
2,530,912	+		GFF2506	0.60	-1.5
2,530,915	-		GFF2506	0.61	-1.5
2,530,920	-		GFF2506	0.61	-2.4
2,530,920	-		GFF2506	0.61	-1.1
2,530,920	-		GFF2506	0.61	+0.1
2,530,920	-		GFF2506	0.61	+1.0
2,530,920	-		GFF2506	0.61	+0.0
2,530,920	-		GFF2506	0.61	-1.7
2,530,920	-		GFF2506	0.61	+0.6
2,530,920	-		GFF2506	0.61	+0.0
2,530,920	-		GFF2506	0.61	+1.3
2,530,920	-		GFF2506	0.61	-0.8
2,530,924	+		GFF2506	0.62	-1.1
2,530,935	+		GFF2506	0.63	-0.1
2,530,950	+		GFF2506	0.66	-0.2
2,530,953	-		GFF2506	0.66	+0.9
2,530,964	+		GFF2506	0.68	-0.2
2,530,974	+		GFF2506	0.69	-0.3
2,530,992	+		GFF2506	0.71	-0.9
2,530,992	+		GFF2506	0.71	-0.7
2,530,992	+		GFF2506	0.71	+1.6
2,530,997	+		GFF2506	0.72	+0.1
2,530,997	+		GFF2506	0.72	-0.7
2,530,997	+		GFF2506	0.72	+0.8
2,530,997	+		GFF2506	0.72	+1.4
2,530,997	+		GFF2506	0.72	-0.5
2,530,998	-		GFF2506	0.72	-0.8
2,531,002	+		GFF2506	0.73	-0.9
2,531,002	+		GFF2506	0.73	-0.8
2,531,002	+		GFF2506	0.73	+0.3
2,531,002	+		GFF2506	0.73	-1.0
2,531,002	+		GFF2506	0.73	-1.0
2,531,002	+		GFF2506	0.73	-1.7
2,531,002	+		GFF2506	0.73	+0.6
2,531,002	+		GFF2506	0.73	+1.2
2,531,002	+		GFF2506	0.73	+0.1
2,531,002	+		GFF2506	0.73	-0.2
2,531,002	+		GFF2506	0.73	-1.1
2,531,002	+		GFF2506	0.73	-0.5
2,531,002	+		GFF2506	0.73	+0.4
2,531,002	+		GFF2506	0.73	+0.3
2,531,002	+		GFF2506	0.73	+0.8
2,531,002	+		GFF2506	0.73	-0.9
2,531,002	+		GFF2506	0.73	-2.5
2,531,002	+		GFF2506	0.73	+0.3
2,531,002	+		GFF2506	0.73	-1.6
2,531,002	+		GFF2506	0.73	-1.2
2,531,002	+		GFF2506	0.73	-0.3
2,531,002	+		GFF2506	0.73	-2.0
2,531,005	-		GFF2506	0.73	-1.8
2,531,005	-		GFF2506	0.73	+1.5
2,531,010	-		GFF2506	0.74	+0.8
2,531,010	-		GFF2506	0.74	-1.4
2,531,010	-		GFF2506	0.74	-1.7
2,531,010	-		GFF2506	0.74	+0.2
2,531,010	-		GFF2506	0.74	+0.2
2,531,010	-		GFF2506	0.74	-0.5
2,531,010	-		GFF2506	0.74	+0.3
2,531,010	-		GFF2506	0.74	-0.5
2,531,010	-		GFF2506	0.74	+0.1
2,531,010	-		GFF2506	0.74	+0.2
2,531,010	-		GFF2506	0.74	+0.3
2,531,010	-		GFF2506	0.74	+0.7
2,531,010	-		GFF2506	0.74	-1.2
2,531,010	-		GFF2506	0.74	-0.5
2,531,010	-		GFF2506	0.74	-0.3
2,531,010	-		GFF2506	0.74	+1.2
2,531,011	+		GFF2506	0.74	+0.0
2,531,016	+		GFF2506	0.75	+0.2
2,531,019	-		GFF2506	0.75	-1.4
2,531,021	+		GFF2506	0.76	+0.5
2,531,021	+		GFF2506	0.76	+0.5
2,531,026	+		GFF2506	0.76	-0.9
2,531,026	+		GFF2506	0.76	-0.6
2,531,026	+		GFF2506	0.76	-1.1
2,531,026	+		GFF2506	0.76	-1.6
2,531,026	+		GFF2506	0.76	-0.8
2,531,026	+		GFF2506	0.76	-1.2
2,531,026	+		GFF2506	0.76	-2.0
2,531,026	+		GFF2506	0.76	-0.8
2,531,026	+		GFF2506	0.76	+1.5
2,531,026	+		GFF2506	0.76	-0.7
2,531,026	+		GFF2506	0.76	-1.1
2,531,026	+		GFF2506	0.76	-0.1
2,531,026	+		GFF2506	0.76	-1.8
2,531,028	+		GFF2506	0.77	-0.2
2,531,028	+		GFF2506	0.77	+0.6
2,531,028	+		GFF2506	0.77	-1.1
2,531,029	-		GFF2506	0.77	-0.5
2,531,029	-		GFF2506	0.77	+0.3
2,531,029	-		GFF2506	0.77	+0.5
2,531,034	-		GFF2506	0.77	-1.5
2,531,034	-		GFF2506	0.77	-1.5
2,531,034	-		GFF2506	0.77	-0.6
2,531,034	-		GFF2506	0.77	-0.1
2,531,034	-		GFF2506	0.77	-0.7
2,531,034	-		GFF2506	0.77	-0.0
2,531,034	-		GFF2506	0.77	+0.6
2,531,034	-		GFF2506	0.77	-1.5
2,531,034	-		GFF2506	0.77	+0.6
2,531,034	-		GFF2506	0.77	-1.1
2,531,034	-		GFF2506	0.77	-1.7
2,531,036	+		GFF2506	0.78	-0.2
2,531,036	+		GFF2506	0.78	+0.2
2,531,036	-		GFF2506	0.78	+0.8
2,531,044	-		GFF2506	0.79	-0.9
2,531,070	+		GFF2506	0.82	-0.6
2,531,078	-		GFF2506	0.84	-0.4
2,531,087	+		GFF2506	0.85	-0.2
2,531,102	-		GFF2506	0.87	-1.2
2,531,117	+		GFF2506	0.89	-0.2
2,531,130	-				+1.2
2,531,182	+				-1.1
2,531,182	+				+0.2
2,531,182	+				+0.9
2,531,182	+				-2.2
2,531,182	+				+2.0
2,531,187	+				-0.9
2,531,187	+				-1.8
2,531,187	+				+0.1
2,531,190	-				+0.4
2,531,192	+				+1.1
2,531,195	-				+0.6
2,531,197	+				-2.1
2,531,200	-				-0.0
2,531,200	-				-0.2
2,531,200	-				-2.4
2,531,214	+				-0.6
2,531,219	+				+0.1
2,531,224	+				-0.3
2,531,224	+				-0.4
2,531,224	+				-0.8
2,531,224	+				+0.1
2,531,224	+				-1.7
2,531,229	-				-1.4
2,531,232	-				+0.3
2,531,232	-				+0.0
2,531,241	+		GFF2507	0.11	-1.8
2,531,244	+		GFF2507	0.11	+0.7
2,531,246	+		GFF2507	0.12	-0.8
2,531,246	+		GFF2507	0.12	+0.6
2,531,251	+		GFF2507	0.13	-1.2
2,531,251	+		GFF2507	0.13	-0.2
2,531,251	+		GFF2507	0.13	+0.5
2,531,259	-		GFF2507	0.15	-1.4
2,531,259	-		GFF2507	0.15	+1.1
2,531,259	-		GFF2507	0.15	-0.6
2,531,259	-		GFF2507	0.15	-0.2
2,531,259	-		GFF2507	0.15	+1.3
2,531,259	-		GFF2507	0.15	-0.6
2,531,259	-		GFF2507	0.15	-0.8
2,531,272	+		GFF2507	0.18	+0.0
2,531,280	-		GFF2507	0.20	-1.0
2,531,331	+		GFF2507	0.31	-1.7
2,531,336	+		GFF2507	0.32	-1.8
2,531,336	+		GFF2507	0.32	-1.0
2,531,346	+		GFF2507	0.35	+0.5
2,531,362	-		GFF2507	0.38	+1.2
2,531,374	+		GFF2507	0.41	+0.2
2,531,379	+		GFF2507	0.42	-1.6
2,531,382	-		GFF2507	0.43	+0.8
2,531,384	+		GFF2507	0.43	-0.2
2,531,395	+		GFF2507	0.46	-1.2
2,531,395	+		GFF2507	0.46	+0.2
2,531,395	+		GFF2507	0.46	+0.2
2,531,403	-		GFF2507	0.48	-0.5
2,531,410	+		GFF2507	0.49	+0.2
2,531,410	+		GFF2507	0.49	-1.4
2,531,410	+		GFF2507	0.49	-0.7
2,531,410	+		GFF2507	0.49	-1.6
2,531,410	+		GFF2507	0.49	+0.3
2,531,413	-		GFF2507	0.50	-1.6
2,531,413	-		GFF2507	0.50	+0.3
2,531,418	-		GFF2507	0.51	+0.2
2,531,418	-		GFF2507	0.51	+0.3
2,531,418	-		GFF2507	0.51	+0.7
2,531,418	-		GFF2507	0.51	+0.1
2,531,418	-		GFF2507	0.51	+0.6
2,531,418	-		GFF2507	0.51	+0.8
2,531,442	+		GFF2507	0.57	+1.3
2,531,450	-		GFF2507	0.58	+0.6
2,531,466	+		GFF2507	0.62	-1.9
2,531,479	-		GFF2507	0.65	+0.4
2,531,492	+		GFF2507	0.68	-1.4
2,531,498	+		GFF2507	0.69	+0.9
2,531,510	-		GFF2507	0.72	-1.5
2,531,510	-		GFF2507	0.72	-2.2
2,531,510	-		GFF2507	0.72	+0.3
2,531,525	+		GFF2507	0.76	-2.2
2,531,537	+		GFF2507	0.78	-0.7
2,531,540	+		GFF2507	0.79	+0.7
2,531,540	+		GFF2507	0.79	+0.5
2,531,540	+		GFF2507	0.79	-1.1
2,531,540	+		GFF2507	0.79	-0.4
2,531,540	+		GFF2507	0.79	-1.0
2,531,540	+		GFF2507	0.79	-0.7
2,531,540	+		GFF2507	0.79	+0.6
2,531,540	+		GFF2507	0.79	+0.9
2,531,540	+		GFF2507	0.79	-0.8
2,531,540	+		GFF2507	0.79	+1.1
2,531,540	+		GFF2507	0.79	+0.5
2,531,540	+		GFF2507	0.79	+0.1
2,531,540	+		GFF2507	0.79	-1.4
2,531,540	+		GFF2507	0.79	+0.4
2,531,540	+		GFF2507	0.79	-0.2
2,531,540	+		GFF2507	0.79	-0.1
2,531,540	+		GFF2507	0.79	-1.1
2,531,540	+		GFF2507	0.79	+0.2
2,531,540	+		GFF2507	0.79	-1.5
2,531,545	+		GFF2507	0.80	-0.1
2,531,545	+		GFF2507	0.80	-0.0
2,531,545	+		GFF2507	0.80	+0.7
2,531,545	+		GFF2507	0.80	-0.4
2,531,545	+		GFF2507	0.80	-0.8
2,531,545	+		GFF2507	0.80	-1.7
2,531,548	-		GFF2507	0.81	-0.5
2,531,548	-		GFF2507	0.81	+0.1
2,531,548	-		GFF2507	0.81	+0.2
2,531,548	-		GFF2507	0.81	+0.8
2,531,548	-		GFF2507	0.81	-2.5
2,531,548	-		GFF2507	0.81	-1.2
2,531,548	-		GFF2507	0.81	+1.2
2,531,548	-		GFF2507	0.81	-2.5
2,531,548	-		GFF2507	0.81	-0.4
2,531,548	-		GFF2507	0.81	+0.2
2,531,548	-		GFF2507	0.81	+1.0
2,531,553	-		GFF2507	0.82	-0.7
2,531,553	-		GFF2507	0.82	+2.2
2,531,553	-		GFF2507	0.82	-1.2
2,531,553	-		GFF2507	0.82	+0.0
2,531,553	-		GFF2507	0.82	-1.0
2,531,553	-		GFF2507	0.82	+0.8
2,531,553	-		GFF2507	0.82	-1.8
2,531,553	-		GFF2507	0.82	-0.1
2,531,553	-		GFF2507	0.82	+0.4
2,531,553	-		GFF2507	0.82	-0.9
2,531,555	-		GFF2507	0.82	-2.6
2,531,563	-		GFF2507	0.84	-0.7
2,531,565	+		GFF2507	0.85	-0.1
2,531,565	+		GFF2507	0.85	-1.5
2,531,565	+		GFF2507	0.85	+0.8
2,531,565	+		GFF2507	0.85	+0.8
2,531,565	+		GFF2507	0.85	-1.2
2,531,565	+		GFF2507	0.85	-1.5
2,531,565	+		GFF2507	0.85	+0.1
2,531,568	-		GFF2507	0.85	-0.0
2,531,573	-		GFF2507	0.87	-0.8
2,531,577	+		GFF2507	0.87	-0.2
2,531,585	-		GFF2507	0.89	+0.8
2,531,585	-		GFF2507	0.89	+0.6
2,531,587	+		GFF2507	0.90	-0.7
2,531,587	+		GFF2507	0.90	+1.0
2,531,604	+				-0.8
2,531,612	-				-1.7
2,531,622	-				-0.2
2,531,629	+				+0.4
2,531,637	-				-0.7
2,531,637	-				+1.1
2,531,643	+				-2.5
2,531,643	+				-0.5
2,531,688	+				+0.2
2,531,688	+				+0.1
2,531,688	+				-0.5
2,531,688	+				-1.5
2,531,688	+				-0.8
2,531,688	+				-1.3
2,531,688	+				-0.5
2,531,688	+				+0.3
2,531,688	+				-0.7
2,531,688	+				-0.7
2,531,696	-				+0.3
2,531,696	-				-2.2
2,531,696	-				-1.4
2,531,696	-				+0.1
2,531,698	+				+0.3
2,531,706	-				-0.7
2,531,706	-				-0.9
2,531,716	-				-1.6
2,531,754	+				-1.4
2,531,784	-				-0.3
2,531,785	+				-1.5
2,531,785	+				+1.0
2,531,785	+				-2.4
2,531,785	+				+0.6
2,531,785	+				+0.5
2,531,785	+				+1.1
2,531,785	+				+0.6
2,531,785	+				+1.2
2,531,785	+				+0.3
2,531,785	+				-0.2
2,531,785	+				-0.9
2,531,785	+				+0.5
2,531,785	+				-0.7
2,531,793	-				+0.8
2,531,793	-				-0.2
2,531,793	-				-0.3
2,531,793	-				+1.0
2,531,793	-				+0.2
2,531,793	-				+1.0
2,531,793	-				+1.0
2,531,793	-				+0.6
2,531,793	-				+0.2
2,531,793	-				-1.3
2,531,793	-				+0.3
2,531,793	-				-1.4
2,531,793	-				+0.8
2,531,793	-				-1.2
2,531,793	-				-0.9
2,531,793	-				-0.8
2,531,800	+				+0.9
2,531,804	+				+0.4
2,531,804	+				-0.6
2,531,805	+				-0.2
2,531,805	+				-2.5
2,531,812	-		GFF2508	0.10	-0.1
2,531,812	-		GFF2508	0.10	-1.4
2,531,812	-		GFF2508	0.10	+0.2
2,531,812	-		GFF2508	0.10	-0.2
2,531,816	+		GFF2508	0.11	+1.2
2,531,817	-		GFF2508	0.11	+1.1
2,531,824	-		GFF2508	0.13	-0.7
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2,532,294	-				+0.7
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2,532,294	-				+1.1
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2,532,345	+				+0.5
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2,533,247	-				-1.1
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