Strain Fitness in Sphingobium sp. HT1-2 around GFF2493

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,512,887	+		GFF2491	0.50	-2.6
2,512,897	-		GFF2491	0.51	-2.2
2,512,899	-		GFF2491	0.52	-2.0
2,512,914	+		GFF2491	0.54	-1.5
2,512,918	-		GFF2491	0.54	-1.8
2,512,918	-		GFF2491	0.54	-2.0
2,512,922	-		GFF2491	0.55	-2.0
2,512,931	+		GFF2491	0.56	-1.2
2,512,943	+		GFF2491	0.57	-1.2
2,512,951	-		GFF2491	0.58	-1.6
2,512,952	+		GFF2491	0.58	-1.4
2,512,962	+		GFF2491	0.59	-1.2
2,512,975	-		GFF2491	0.61	-2.0
2,512,983	+		GFF2491	0.62	-1.7
2,513,009	+		GFF2491	0.65	-2.5
2,513,010	-		GFF2491	0.65	-1.1
2,513,010	-		GFF2491	0.65	-1.8
2,513,023	+		GFF2491	0.67	-2.9
2,513,033	-		GFF2491	0.68	-0.3
2,513,033	-		GFF2491	0.68	-1.9
2,513,052	-		GFF2491	0.70	-1.6
2,513,136	-		GFF2491	0.81	-1.6
2,513,141	+		GFF2491	0.81	-1.7
2,513,147	-		GFF2491	0.82	-1.5
2,513,155	-		GFF2491	0.83	-1.4
2,513,196	+		GFF2491	0.88	-1.5
2,513,216	-				-1.2
2,513,300	-				+0.1
2,513,308	+				-2.0
2,513,829	+				-0.2
2,513,837	-				-1.5
2,513,837	-				+1.1
2,513,881	+				-0.6
2,513,883	-				-0.4
2,513,887	-				+0.5
2,513,893	+				-0.8
2,513,893	+				+0.3
2,513,917	+		GFF2493	0.17	-1.8
2,513,917	+		GFF2493	0.17	+1.0
2,513,917	+		GFF2493	0.17	-0.4
2,513,917	+		GFF2493	0.17	-0.1
2,513,925	-		GFF2493	0.19	+0.5
2,513,925	-		GFF2493	0.19	-2.0
2,513,925	-		GFF2493	0.19	-0.2
2,513,925	-		GFF2493	0.19	-2.0
2,513,925	-		GFF2493	0.19	+0.2
2,513,925	-		GFF2493	0.19	-0.7
2,513,925	-		GFF2493	0.19	+1.6
2,513,964	+		GFF2493	0.32	-0.2
2,513,965	+		GFF2493	0.32	-0.4
2,513,965	+		GFF2493	0.32	-0.2
2,513,973	-		GFF2493	0.35	-0.2
2,513,973	-		GFF2493	0.35	+0.8
2,513,973	-		GFF2493	0.35	+0.0
2,513,973	-		GFF2493	0.35	-0.7
2,514,234	-				+1.3
2,514,243	+				-0.8
2,514,251	-				-2.7
2,514,251	-				+0.6
2,514,279	+		GFF2494	0.11	-1.2
2,514,285	+		GFF2494	0.12	-2.7
2,514,291	+		GFF2494	0.13	-1.3
2,514,308	+		GFF2494	0.17	-0.5
2,514,316	-		GFF2494	0.18	-0.6
2,514,316	-		GFF2494	0.18	-0.3
2,514,317	+		GFF2494	0.18	+1.8
2,514,317	+		GFF2494	0.18	-0.3
2,514,317	+		GFF2494	0.18	+0.5
2,514,317	+		GFF2494	0.18	+0.8
2,514,325	-		GFF2494	0.20	-1.1
2,514,330	-		GFF2494	0.21	-0.4
2,514,336	-		GFF2494	0.22	-0.7
2,514,356	+		GFF2494	0.25	+0.1
2,514,356	+		GFF2494	0.25	-1.5
2,514,356	+		GFF2494	0.25	-1.8
2,514,356	+		GFF2494	0.25	-0.4
2,514,356	+		GFF2494	0.25	-0.2
2,514,356	+		GFF2494	0.25	-0.2
2,514,356	+		GFF2494	0.25	-2.0
2,514,361	+		GFF2494	0.26	-1.5
2,514,364	-		GFF2494	0.27	+0.3
2,514,364	-		GFF2494	0.27	-0.5
2,514,364	-		GFF2494	0.27	-2.7
2,514,364	-		GFF2494	0.27	+0.8
2,514,366	+		GFF2494	0.27	-0.5
2,514,366	+		GFF2494	0.27	-0.2
2,514,366	+		GFF2494	0.27	+1.2
2,514,374	-		GFF2494	0.29	-1.2
2,514,374	-		GFF2494	0.29	+1.3
2,514,374	-		GFF2494	0.29	-2.4
2,514,374	-		GFF2494	0.29	-2.5
2,514,374	-		GFF2494	0.29	-0.7
2,514,379	-		GFF2494	0.30	-0.1
2,514,419	+		GFF2494	0.37	+0.7
2,514,422	-		GFF2494	0.37	-1.7
2,514,422	-		GFF2494	0.37	+0.2
2,514,422	-		GFF2494	0.37	-0.5
2,514,424	+		GFF2494	0.38	-2.0
2,514,424	+		GFF2494	0.38	+0.4
2,514,424	+		GFF2494	0.38	-1.1
2,514,424	+		GFF2494	0.38	-0.2
2,514,427	-		GFF2494	0.38	+0.1
2,514,432	-		GFF2494	0.39	+0.2
2,514,432	-		GFF2494	0.39	-0.9
2,514,432	-		GFF2494	0.39	-2.1
2,514,432	-		GFF2494	0.39	-2.2
2,514,432	-		GFF2494	0.39	+0.5
2,514,461	+		GFF2494	0.44	-0.9
2,514,464	-		GFF2494	0.45	+0.1
2,514,479	+		GFF2494	0.48	+0.2
2,514,479	+		GFF2494	0.48	+0.2
2,514,479	+		GFF2494	0.48	-1.2
2,514,479	+		GFF2494	0.48	+0.7
2,514,479	+		GFF2494	0.48	+0.1
2,514,479	+		GFF2494	0.48	-0.1
2,514,479	+		GFF2494	0.48	+2.1
2,514,479	+		GFF2494	0.48	-0.9
2,514,484	+		GFF2494	0.49	-2.2
2,514,485	-		GFF2494	0.49	-0.2
2,514,487	-		GFF2494	0.49	-1.4
2,514,487	-		GFF2494	0.49	-0.9
2,514,487	-		GFF2494	0.49	-0.1
2,514,487	-		GFF2494	0.49	+0.5
2,514,487	-		GFF2494	0.49	+0.3
2,514,487	-		GFF2494	0.49	-1.0
2,514,495	-		GFF2494	0.51	+0.7
2,514,510	+		GFF2494	0.53	-0.7
2,514,518	-		GFF2494	0.55	+0.8
2,514,537	-		GFF2494	0.58	-1.0
2,514,544	+		GFF2494	0.60	-1.2
2,514,544	+		GFF2494	0.60	-1.2
2,514,552	-		GFF2494	0.61	-0.2
2,514,552	-		GFF2494	0.61	+0.2
2,514,552	-		GFF2494	0.61	+1.0
2,514,552	-		GFF2494	0.61	-1.6
2,514,558	+		GFF2494	0.62	+1.2
2,514,560	+		GFF2494	0.62	-2.1
2,514,566	-		GFF2494	0.64	-1.2
2,514,566	-		GFF2494	0.64	-2.8
2,514,566	-		GFF2494	0.64	-0.1
2,514,572	+		GFF2494	0.65	-0.5
2,514,575	-		GFF2494	0.65	+0.5
2,514,589	+		GFF2494	0.68	+0.1
2,514,597	-		GFF2494	0.69	+0.1
2,514,618	+		GFF2494	0.73	-0.7
2,514,618	+		GFF2494	0.73	+1.8
2,514,626	-		GFF2494	0.74	-1.4
2,514,626	-		GFF2494	0.74	-0.2
2,514,626	-		GFF2494	0.74	-1.6
2,514,635	-		GFF2494	0.76	-0.7
2,514,640	-		GFF2494	0.77	-0.5
2,514,657	+		GFF2494	0.80	-1.1
2,514,657	+		GFF2494	0.80	-0.1
2,514,675	-		GFF2494	0.83	+0.2
2,514,702	+		GFF2494	0.88	-1.4
2,514,702	+		GFF2494	0.88	-0.7
2,514,736	+				-1.0
2,514,736	+				-2.0
2,514,736	+				-0.3
2,514,744	-				-0.8
2,514,774	-				+1.0
2,514,779	-				-0.7
2,514,784	-				+0.1
2,514,784	-				-0.3
2,514,784	-				-1.3
2,514,784	-				-1.1
2,514,815	+				-0.1
2,514,895	-				+0.1
2,514,904	-				-0.7
2,514,906	+				+0.4
2,514,909	+				-1.2
2,514,915	+				-0.2
2,514,915	+				+0.2
2,514,917	-				+0.4
2,514,917	-				+0.7
2,514,923	-				-0.1
2,514,923	-				-0.9
2,514,981	+				-1.5
2,515,005	-				+0.1
2,515,005	-				+1.0
2,515,005	-				-1.2
2,515,021	+				-0.2
2,515,042	+				+0.4
2,515,055	-				-1.5
2,515,065	+				+0.9
2,515,075	+				+0.4
2,515,082	-				-0.4
2,515,138	-		GFF2495	0.11	-1.6
2,515,165	-		GFF2495	0.12	-0.8
2,515,174	-		GFF2495	0.13	+0.2