Strain Fitness in Sphingobium sp. HT1-2 around GFF2477

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,499,785	-		GFF2475	0.54	-1.7
2,499,804	-		GFF2475	0.56	-2.0
2,499,823	+		GFF2475	0.58	-1.0
2,499,824	-		GFF2475	0.58	-0.6
2,499,824	-		GFF2475	0.58	-1.3
2,499,824	-		GFF2475	0.58	+0.4
2,499,830	-		GFF2475	0.59	-0.6
2,499,840	-		GFF2475	0.60	+0.2
2,499,898	+		GFF2475	0.66	-0.4
2,499,909	+		GFF2475	0.67	-1.7
2,499,917	-		GFF2475	0.68	+1.5
2,499,917	-		GFF2475	0.68	-0.2
2,499,917	-		GFF2475	0.68	-1.4
2,499,917	-		GFF2475	0.68	+1.0
2,499,917	-		GFF2475	0.68	-0.3
2,499,931	+		GFF2475	0.70	-0.5
2,499,939	-		GFF2475	0.71	-0.4
2,499,943	+		GFF2475	0.71	-0.0
2,499,943	-		GFF2475	0.71	-1.7
2,499,975	-		GFF2475	0.75	+0.9
2,500,003	+		GFF2475	0.78	-1.0
2,500,003	+		GFF2475	0.78	+1.1
2,500,011	-		GFF2475	0.79	+0.4
2,500,011	-		GFF2475	0.79	-0.8
2,500,017	-		GFF2475	0.79	+0.5
2,500,020	+		GFF2475	0.80	-1.1
2,500,031	+		GFF2475	0.81	-0.7
2,500,045	+		GFF2475	0.82	-1.1
2,500,045	+		GFF2475	0.82	-1.5
2,500,045	+		GFF2475	0.82	-0.4
2,500,045	+		GFF2475	0.82	+0.2
2,500,053	-		GFF2475	0.83	-0.4
2,500,053	-		GFF2475	0.83	+0.9
2,500,053	-		GFF2475	0.83	-1.2
2,500,054	+		GFF2475	0.83	-0.2
2,500,066	+		GFF2475	0.85	-1.9
2,500,092	+		GFF2475	0.88	+0.8
2,500,094	+		GFF2475	0.88	-1.2
2,500,099	+		GFF2475	0.88	-0.4
2,500,107	-		GFF2475	0.89	-0.3
2,500,107	-		GFF2475	0.89	-0.3
2,500,116	+				-0.6
2,500,124	-				-3.4
2,500,124	-				+1.0
2,500,124	-				+0.7
2,500,135	+				-1.5
2,500,143	-				-0.8
2,500,145	-				-0.2
2,500,148	-				-0.3
2,500,188	-				-0.3
2,500,188	-				-0.7
2,500,198	-				-1.2
2,500,198	-				-0.1
2,500,198	-				+0.8
2,500,198	-				+0.3
2,500,198	-				-0.4
2,500,198	-				-0.7
2,500,198	-				-1.2
2,500,198	-				-0.6
2,500,198	-				-1.0
2,500,198	-				+0.0
2,500,198	-				+1.3
2,500,214	-				-1.0
2,500,238	+				+0.3
2,500,239	-				-0.3
2,500,246	-				-0.2
2,500,246	-				-0.7
2,500,254	+				-0.8
2,500,258	-				+0.8
2,500,262	+				-0.5
2,500,268	+				+0.2
2,500,268	+				-0.8
2,500,268	+				+0.2
2,500,276	-				-0.1
2,500,276	-				-1.1
2,500,276	-				-0.4
2,500,276	-				+1.5
2,500,276	-				-0.4
2,500,277	+				-1.4
2,500,277	+				+0.5
2,500,297	+				-0.7
2,500,297	+				+0.8
2,500,305	-				+1.3
2,500,305	-				+0.5
2,500,305	-				-0.9
2,500,367	+		GFF2476	0.11	-0.8
2,500,382	+		GFF2476	0.15	+0.3
2,500,397	+		GFF2476	0.18	-0.3
2,500,404	+		GFF2476	0.20	-0.5
2,500,404	+		GFF2476	0.20	-1.3
2,500,407	-		GFF2476	0.21	-0.1
2,500,409	+		GFF2476	0.21	-1.6
2,500,412	-		GFF2476	0.22	-0.7
2,500,417	-		GFF2476	0.23	+1.5
2,500,426	+		GFF2476	0.25	-0.0
2,500,428	+		GFF2476	0.25	-0.2
2,500,428	+		GFF2476	0.25	-1.7
2,500,428	+		GFF2476	0.25	-0.6
2,500,436	-		GFF2476	0.27	-0.5
2,500,451	+		GFF2476	0.31	+0.3
2,500,458	+		GFF2476	0.32	-0.2
2,500,467	-		GFF2476	0.34	-0.1
2,500,467	-		GFF2476	0.34	-1.0
2,500,525	-		GFF2476	0.47	-2.0
2,500,535	+		GFF2476	0.50	-1.0
2,500,543	-		GFF2476	0.52	-2.0
2,500,626	+		GFF2476	0.71	-0.5
2,500,629	-		GFF2476	0.71	-0.3
2,500,634	-		GFF2476	0.72	-0.1
2,500,634	-		GFF2476	0.72	+0.3
2,500,639	-		GFF2476	0.74	-0.7
2,500,680	-		GFF2476	0.83	+1.4
2,500,683	+		GFF2476	0.84	+0.4
2,500,702	+		GFF2476	0.88	-0.3
2,500,710	-		GFF2476	0.90	+0.0
2,500,710	-		GFF2476	0.90	+0.1
2,500,710	-		GFF2476	0.90	-0.8
2,500,732	+				-0.9
2,500,747	-				-1.9
2,500,747	-				-1.8
2,500,754	+				-0.2
2,500,757	-				-2.1
2,500,757	-				+1.5
2,500,762	-				-1.1
2,500,769	+				+0.5
2,500,788	-				+0.5
2,500,788	-				+0.1
2,500,788	-				+0.1
2,500,788	-				-1.4
2,500,788	-				-0.2
2,500,788	-				-0.6
2,500,791	+				-0.4
2,500,791	+				-0.9
2,500,791	+				-2.2
2,500,794	-				-0.5
2,500,799	-				-0.8
2,500,799	-				-1.1
2,500,799	-				-0.9
2,500,799	-				-2.1
2,500,799	-				-1.4
2,500,799	-				+0.5
2,500,838	-		GFF2477	0.12	+0.3
2,500,861	+		GFF2477	0.15	+0.8
2,500,861	+		GFF2477	0.15	-1.9
2,500,867	+		GFF2477	0.16	+0.4
2,500,869	-		GFF2477	0.16	+0.5
2,500,869	-		GFF2477	0.16	-1.4
2,500,872	+		GFF2477	0.17	-1.6
2,500,872	+		GFF2477	0.17	+0.2
2,500,903	+		GFF2477	0.21	-0.2
2,500,925	+		GFF2477	0.24	+1.3
2,500,931	+		GFF2477	0.25	+0.7
2,500,939	+		GFF2477	0.26	+0.2
2,500,941	-		GFF2477	0.26	-1.5
2,500,974	+		GFF2477	0.31	+0.0
2,500,974	+		GFF2477	0.31	-2.2
2,500,974	+		GFF2477	0.31	-0.6
2,500,974	+		GFF2477	0.31	-1.4
2,500,980	-		GFF2477	0.31	-0.0
2,500,982	-		GFF2477	0.32	-1.1
2,501,007	+		GFF2477	0.35	-0.3
2,501,012	+		GFF2477	0.36	-0.2
2,501,020	-		GFF2477	0.37	+1.2
2,501,024	+		GFF2477	0.37	-1.2
2,501,032	-		GFF2477	0.39	-1.0
2,501,034	+		GFF2477	0.39	-2.0
2,501,034	+		GFF2477	0.39	-1.8
2,501,042	-		GFF2477	0.40	+1.2
2,501,047	-		GFF2477	0.41	-0.6
2,501,047	-		GFF2477	0.41	-0.1
2,501,056	+		GFF2477	0.42	+0.2
2,501,064	-		GFF2477	0.43	+0.9
2,501,064	-		GFF2477	0.43	+0.3
2,501,064	-		GFF2477	0.43	-0.7
2,501,064	-		GFF2477	0.43	+0.5
2,501,068	+		GFF2477	0.43	+0.5
2,501,073	+		GFF2477	0.44	+0.8
2,501,078	+		GFF2477	0.45	+0.5
2,501,081	+		GFF2477	0.45	-1.7
2,501,081	-		GFF2477	0.45	-0.6
2,501,090	-		GFF2477	0.47	-0.1
2,501,109	+		GFF2477	0.49	-0.7
2,501,118	+		GFF2477	0.50	+0.9
2,501,118	+		GFF2477	0.50	-0.6
2,501,118	+		GFF2477	0.50	-0.6
2,501,118	+		GFF2477	0.50	-0.2
2,501,148	-		GFF2477	0.54	-0.9
2,501,157	+		GFF2477	0.56	-0.8
2,501,157	+		GFF2477	0.56	-0.3
2,501,157	+		GFF2477	0.56	-1.3
2,501,157	+		GFF2477	0.56	-1.1
2,501,160	-		GFF2477	0.56	-0.4
2,501,165	-		GFF2477	0.57	-1.1
2,501,165	-		GFF2477	0.57	-1.1
2,501,166	+		GFF2477	0.57	-0.4
2,501,171	-		GFF2477	0.58	-0.7
2,501,174	-		GFF2477	0.58	+1.3
2,501,184	+		GFF2477	0.59	-0.1
2,501,189	+		GFF2477	0.60	-1.0
2,501,189	+		GFF2477	0.60	-0.0
2,501,189	+		GFF2477	0.60	-0.1
2,501,192	-		GFF2477	0.60	+0.1
2,501,192	-		GFF2477	0.60	-0.2
2,501,192	-		GFF2477	0.60	-1.6
2,501,203	+		GFF2477	0.62	-0.5
2,501,244	-		GFF2477	0.68	+1.3
2,501,244	-		GFF2477	0.68	-0.6
2,501,255	+		GFF2477	0.69	-1.0
2,501,255	+		GFF2477	0.69	-1.7
2,501,255	+		GFF2477	0.69	-0.5
2,501,255	+		GFF2477	0.69	+0.2
2,501,263	-		GFF2477	0.70	-1.4
2,501,263	-		GFF2477	0.70	-0.6
2,501,263	-		GFF2477	0.70	+1.3
2,501,263	-		GFF2477	0.70	-0.4
2,501,263	-		GFF2477	0.70	-1.1
2,501,271	-		GFF2477	0.71	+1.6
2,501,278	-		GFF2477	0.72	-0.4
2,501,284	+		GFF2477	0.73	-1.9
2,501,284	-		GFF2477	0.73	+0.3
2,501,305	-		GFF2477	0.76	+0.9
2,501,364	-		GFF2477	0.84	-2.0
2,501,375	-		GFF2477	0.86	-1.8
2,501,375	-		GFF2477	0.86	+0.7
2,501,385	+		GFF2477	0.87	+0.3
2,501,385	+		GFF2477	0.87	+1.1
2,501,385	-		GFF2477	0.87	+0.8
2,501,391	-		GFF2477	0.88	+0.1
2,501,393	-		GFF2477	0.88	+0.4
2,501,393	-		GFF2477	0.88	+0.3
2,501,393	-		GFF2477	0.88	-0.6
2,501,393	-		GFF2477	0.88	-0.2
2,501,393	-		GFF2477	0.88	-1.1
2,501,428	+				+0.3
2,501,430	+				+1.5
2,501,430	+				+1.0
2,501,430	+				-0.1
2,501,430	+				+0.6
2,501,436	-				-2.1
2,501,438	-				-2.5
2,501,442	+				-1.0
2,501,442	+				-1.4
2,501,447	+				-0.4
2,501,457	+				-0.4
2,501,465	-				-0.1
2,501,465	-				-0.2
2,501,484	+				+0.5
2,501,495	-				+0.2
2,501,515	+				-1.8
2,501,520	+				-0.4
2,501,520	+				-1.4
2,501,523	-				+0.8
2,501,523	-				+0.3
2,501,525	+				-3.0
2,501,529	-				+1.2
2,501,529	-				-0.4
2,501,533	-				-2.4
2,501,533	-				+0.2
2,501,609	+				-1.9
2,501,622	-				+0.1
2,501,624	-				+0.2
2,501,644	+				-0.7
2,501,652	-				-0.2
2,501,669	+				+0.1
2,501,677	-				-1.7
2,501,686	+				+0.8
2,501,694	+				+0.3
2,501,704	-				+0.3
2,501,722	-				-0.9
2,501,737	+				-1.0
2,501,745	-				-1.6
2,501,745	-				+0.0
2,501,745	-				-0.4
2,501,745	-				-1.2
2,501,745	-				-0.2
2,501,755	-				+0.3
2,501,767	+				-1.7
2,501,820	-				+0.4
2,501,821	-				-0.3
2,501,828	+		GFF2478	0.10	-1.1
2,501,828	+		GFF2478	0.10	-0.4
2,501,828	+		GFF2478	0.10	-2.1
2,501,828	+		GFF2478	0.10	-1.6
2,501,828	+		GFF2478	0.10	+0.0
2,501,828	+		GFF2478	0.10	-0.5
2,501,828	+		GFF2478	0.10	-2.2
2,501,828	+		GFF2478	0.10	-1.1
2,501,828	+		GFF2478	0.10	-1.2
2,501,828	+		GFF2478	0.10	+0.4
2,501,828	+		GFF2478	0.10	-0.2
2,501,836	-		GFF2478	0.11	-0.2
2,501,836	-		GFF2478	0.11	-2.6
2,501,836	-		GFF2478	0.11	-0.8
2,501,836	-		GFF2478	0.11	+0.2
2,501,836	-		GFF2478	0.11	-1.5
2,501,836	-		GFF2478	0.11	+0.8
2,501,858	+		GFF2478	0.14	-0.1
2,501,877	+		GFF2478	0.16	-1.1
2,501,880	-		GFF2478	0.16	-0.1
2,501,885	-		GFF2478	0.17	+1.0
2,501,885	-		GFF2478	0.17	-0.4
2,501,890	-		GFF2478	0.17	+0.5
2,501,907	-		GFF2478	0.19	+0.5
2,501,915	+		GFF2478	0.20	-1.4
2,501,928	+		GFF2478	0.21	-0.9
2,501,946	-		GFF2478	0.23	-0.5
2,501,955	+		GFF2478	0.24	+0.1
2,501,955	+		GFF2478	0.24	-2.6
2,501,955	+		GFF2478	0.24	+1.1
2,501,955	+		GFF2478	0.24	+0.4
2,501,955	+		GFF2478	0.24	+0.1
2,501,955	+		GFF2478	0.24	-2.1
2,501,955	+		GFF2478	0.24	-0.7
2,501,955	+		GFF2478	0.24	+0.5
2,501,955	+		GFF2478	0.24	-0.1
2,501,955	+		GFF2478	0.24	+0.1
2,501,955	+		GFF2478	0.24	-0.7
2,501,961	-		GFF2478	0.25	-0.2
2,501,963	+		GFF2478	0.25	-1.2
2,501,963	-		GFF2478	0.25	+0.7
2,501,963	-		GFF2478	0.25	+0.1
2,501,963	-		GFF2478	0.25	-0.1
2,501,963	-		GFF2478	0.25	+0.3
2,501,963	-		GFF2478	0.25	-0.7
2,501,963	-		GFF2478	0.25	-0.1
2,501,963	-		GFF2478	0.25	-0.1
2,501,963	-		GFF2478	0.25	+0.2
2,501,963	-		GFF2478	0.25	-1.7
2,501,963	-		GFF2478	0.25	-0.5
2,501,970	-		GFF2478	0.26	+1.7
2,501,971	-		GFF2478	0.26	+1.0
2,501,971	-		GFF2478	0.26	+0.9
2,501,971	-		GFF2478	0.26	+0.0
2,501,975	+		GFF2478	0.27	-0.7
2,501,981	+		GFF2478	0.27	-0.6
2,501,996	-		GFF2478	0.29	+0.5
2,501,996	-		GFF2478	0.29	+0.4
2,502,006	-		GFF2478	0.30	-0.3
2,502,015	+		GFF2478	0.31	-2.8
2,502,032	+		GFF2478	0.33	+0.3
2,502,032	+		GFF2478	0.33	-1.9
2,502,032	+		GFF2478	0.33	+0.1
2,502,034	-		GFF2478	0.33	+1.7
2,502,040	-		GFF2478	0.34	+0.3
2,502,043	+		GFF2478	0.34	-0.4
2,502,043	+		GFF2478	0.34	-0.1
2,502,043	+		GFF2478	0.34	-2.7
2,502,045	+		GFF2478	0.34	+0.7
2,502,051	-		GFF2478	0.35	-1.5
2,502,077	+		GFF2478	0.38	-1.1
2,502,080	-		GFF2478	0.38	+0.5
2,502,135	+		GFF2478	0.44	-0.7
2,502,149	-		GFF2478	0.46	-0.1
2,502,163	+		GFF2478	0.48	-1.0
2,502,179	+		GFF2478	0.49	+0.2
2,502,187	-		GFF2478	0.50	-1.6
2,502,196	+		GFF2478	0.51	-0.5
2,502,196	+		GFF2478	0.51	-0.1
2,502,201	+		GFF2478	0.52	+0.4
2,502,204	-		GFF2478	0.52	+0.2
2,502,206	+		GFF2478	0.52	-0.8
2,502,209	-		GFF2478	0.53	-1.3
2,502,214	-		GFF2478	0.53	+0.9
2,502,224	+		GFF2478	0.54	-1.0
2,502,225	+		GFF2478	0.54	-1.1
2,502,232	-		GFF2478	0.55	-1.1
2,502,252	-		GFF2478	0.57	+1.7
2,502,258	-		GFF2478	0.58	-1.4
2,502,261	+		GFF2478	0.58	-1.0
2,502,261	+		GFF2478	0.58	-0.7
2,502,269	-		GFF2478	0.59	-0.5
2,502,305	+		GFF2478	0.63	+0.5
2,502,305	+		GFF2478	0.63	-1.4
2,502,313	-		GFF2478	0.64	+0.8
2,502,319	-		GFF2478	0.65	-1.2
2,502,323	-		GFF2478	0.65	+0.1
2,502,343	-		GFF2478	0.67	+0.5
2,502,375	+		GFF2478	0.71	-1.1
2,502,375	+		GFF2478	0.71	-0.6
2,502,375	+		GFF2478	0.71	-0.9
2,502,375	+		GFF2478	0.71	-1.5
2,502,375	+		GFF2478	0.71	-1.5
2,502,376	+		GFF2478	0.71	-0.3
2,502,383	-		GFF2478	0.72	-0.5
2,502,383	-		GFF2478	0.72	+1.0
2,502,383	-		GFF2478	0.72	+0.9
2,502,383	-		GFF2478	0.72	-0.9
2,502,383	-		GFF2478	0.72	-0.1
2,502,384	-		GFF2478	0.72	-2.3
2,502,385	-		GFF2478	0.72	+0.8
2,502,390	-		GFF2478	0.73	-0.1
2,502,390	-		GFF2478	0.73	-0.2
2,502,390	-		GFF2478	0.73	+0.3
2,502,410	-		GFF2478	0.75	-1.3
2,502,412	+		GFF2478	0.75	-0.7
2,502,415	-		GFF2478	0.75	+1.4
2,502,420	-		GFF2478	0.76	-0.4
2,502,425	+		GFF2478	0.77	+0.1
2,502,425	+		GFF2478	0.77	-0.2
2,502,425	+		GFF2478	0.77	-0.5
2,502,433	-		GFF2478	0.77	+0.5
2,502,470	-		GFF2478	0.82	-0.8
2,502,474	+		GFF2478	0.82	-0.5
2,502,475	+		GFF2478	0.82	-0.4