Strain Fitness in Sphingobium sp. HT1-2 around GFF2473

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,497,482	+		GFF2472	0.36	+0.8
2,497,482	+		GFF2472	0.36	-1.9
2,497,482	+		GFF2472	0.36	-1.1
2,497,482	+		GFF2472	0.36	+0.7
2,497,485	-		GFF2472	0.37	-2.9
2,497,490	-		GFF2472	0.37	-0.7
2,497,496	-		GFF2472	0.37	-0.6
2,497,505	+		GFF2472	0.38	+0.1
2,497,550	+		GFF2472	0.41	-0.7
2,497,555	+		GFF2472	0.41	-0.6
2,497,563	-		GFF2472	0.42	-1.3
2,497,563	-		GFF2472	0.42	+0.1
2,497,569	-		GFF2472	0.42	+0.5
2,497,575	-		GFF2472	0.42	+1.2
2,497,597	+		GFF2472	0.44	+1.1
2,497,652	+		GFF2472	0.48	-0.2
2,497,667	-		GFF2472	0.48	+0.0
2,497,681	+		GFF2472	0.49	-1.3
2,497,681	-		GFF2472	0.49	-0.5
2,497,681	-		GFF2472	0.49	-1.3
2,497,681	-		GFF2472	0.49	-1.0
2,497,723	+		GFF2472	0.52	-1.0
2,497,726	-		GFF2472	0.52	+0.3
2,497,736	-		GFF2472	0.53	+0.4
2,497,759	+		GFF2472	0.55	+1.5
2,497,762	-		GFF2472	0.55	-0.7
2,497,762	-		GFF2472	0.55	-0.5
2,497,782	+		GFF2472	0.56	-1.2
2,497,790	-		GFF2472	0.57	+0.3
2,497,790	-		GFF2472	0.57	-1.2
2,497,790	-		GFF2472	0.57	-0.2
2,497,793	-		GFF2472	0.57	+0.9
2,497,811	-		GFF2472	0.58	-2.8
2,497,832	+		GFF2472	0.59	-0.9
2,497,833	-		GFF2472	0.59	+0.2
2,497,838	-		GFF2472	0.60	-1.7
2,497,840	-		GFF2472	0.60	+0.2
2,497,844	+		GFF2472	0.60	+1.2
2,497,849	+		GFF2472	0.60	+0.6
2,497,849	+		GFF2472	0.60	+0.2
2,497,849	+		GFF2472	0.60	-2.0
2,497,857	-		GFF2472	0.61	+0.0
2,497,872	-		GFF2472	0.62	-1.8
2,497,910	-		GFF2472	0.64	+0.6
2,497,922	+		GFF2472	0.65	+0.8
2,497,928	-		GFF2472	0.66	-0.2
2,497,935	-		GFF2472	0.66	+0.0
2,497,946	+		GFF2472	0.67	-0.8
2,497,958	-		GFF2472	0.68	+1.0
2,497,975	+		GFF2472	0.69	-0.2
2,498,095	+		GFF2472	0.77	+0.5
2,498,095	+		GFF2472	0.77	-1.4
2,498,100	+		GFF2472	0.77	-0.3
2,498,103	-		GFF2472	0.77	+0.1
2,498,140	+		GFF2472	0.80	+0.8
2,498,140	+		GFF2472	0.80	+0.2
2,498,141	+		GFF2472	0.80	+0.3
2,498,190	+		GFF2472	0.83	-2.0
2,498,190	+		GFF2472	0.83	-1.1
2,498,190	+		GFF2472	0.83	-2.2
2,498,190	+		GFF2472	0.83	+0.3
2,498,190	+		GFF2472	0.83	+1.4
2,498,190	+		GFF2472	0.83	+0.3
2,498,190	+		GFF2472	0.83	+1.0
2,498,190	+		GFF2472	0.83	+0.5
2,498,193	-		GFF2472	0.83	-0.4
2,498,198	-		GFF2472	0.83	-0.5
2,498,198	-		GFF2472	0.83	-0.8
2,498,198	-		GFF2472	0.83	-0.7
2,498,198	-		GFF2472	0.83	-0.5
2,498,198	-		GFF2472	0.83	-1.9
2,498,221	+		GFF2472	0.85	-0.9
2,498,247	-		GFF2472	0.87	+0.8
2,498,247	-		GFF2472	0.87	-1.2
2,498,258	+		GFF2472	0.87	+0.3
2,498,263	+		GFF2472	0.88	+1.4
2,498,266	-		GFF2472	0.88	-1.8
2,498,266	-		GFF2472	0.88	-1.7
2,498,311	+				+0.4
2,498,336	+				-1.2
2,498,336	+				-0.1
2,498,336	+				+0.1
2,498,336	+				+0.3
2,498,336	+				-0.4
2,498,336	+				+0.5
2,498,336	+				-1.0
2,498,336	+				+0.8
2,498,344	-				-0.6
2,498,344	-				-0.7
2,498,344	-				+0.9
2,498,344	-				-0.1
2,498,372	-				+0.2
2,498,380	+				-0.4
2,498,384	+				+0.3
2,498,399	+				-1.9
2,498,399	+				+0.8
2,498,399	+				+0.8
2,498,407	-				-0.7
2,498,411	-				-2.6
2,498,417	-				+0.7
2,498,417	-				+0.2
2,498,418	+				-2.2
2,498,440	+				+0.2
2,498,441	+				-0.1
2,498,445	+				-2.7
2,498,445	+				-0.7
2,498,445	+				-1.2
2,498,445	+				-0.0
2,498,445	+				-1.9
2,498,445	+				-0.2
2,498,445	+				-0.7
2,498,445	+				+0.5
2,498,445	+				-1.2
2,498,445	+				+0.2
2,498,445	+				+0.9
2,498,445	+				-0.2
2,498,445	+				+0.1
2,498,445	+				-0.6
2,498,445	+				+0.6
2,498,445	+				-0.8
2,498,445	+				+0.9
2,498,445	+				+0.7
2,498,445	+				-1.5
2,498,445	+				-0.0
2,498,445	+				+0.1
2,498,445	+				-0.2
2,498,451	+				-1.5
2,498,451	+				-0.1
2,498,451	+				-0.2
2,498,453	-				+1.5
2,498,453	-				+0.1
2,498,453	-				+1.1
2,498,453	-				-2.7
2,498,453	-				-0.1
2,498,453	-				-2.9
2,498,453	-				-0.7
2,498,453	-				+0.7
2,498,453	-				+1.2
2,498,453	-				-0.4
2,498,453	-				+0.0
2,498,453	-				-0.3
2,498,453	-				-1.5
2,498,453	-				+0.9
2,498,453	-				-0.2
2,498,453	-				+0.0
2,498,453	-				-1.2
2,498,459	-				+0.0
2,498,644	-				-0.4
2,498,726	-				-0.7
2,498,750	+		GFF2474	0.14	-1.1
2,498,752	+		GFF2474	0.14	+0.9
2,498,758	+		GFF2474	0.15	+0.5
2,498,768	+		GFF2474	0.17	-1.7
2,498,770	-		GFF2474	0.17	+0.0
2,498,799	+		GFF2474	0.22	-0.7
2,498,812	+		GFF2474	0.24	-1.4
2,498,817	+		GFF2474	0.25	+0.3
2,498,817	+		GFF2474	0.25	+0.0
2,498,820	-		GFF2474	0.25	+0.5
2,498,820	-		GFF2474	0.25	-1.9
2,498,820	-		GFF2474	0.25	+1.1
2,498,820	-		GFF2474	0.25	+0.8
2,498,822	+		GFF2474	0.25	+0.0
2,498,822	+		GFF2474	0.25	+0.6
2,498,841	+		GFF2474	0.28	-0.7
2,498,868	+		GFF2474	0.33	-2.0
2,498,871	-		GFF2474	0.33	-1.5
2,498,876	-		GFF2474	0.34	-0.1
2,498,928	-		GFF2474	0.43	+0.6
2,498,933	-		GFF2474	0.43	-0.2
2,498,990	+		GFF2474	0.53	-1.3
2,498,990	+		GFF2474	0.53	-1.7
2,498,990	+		GFF2474	0.53	+0.0
2,498,998	-		GFF2474	0.54	-1.0
2,498,998	-		GFF2474	0.54	-1.5
2,498,998	-		GFF2474	0.54	-0.1
2,498,998	-		GFF2474	0.54	-0.4
2,498,998	-		GFF2474	0.54	-2.0
2,498,998	-		GFF2474	0.54	+1.2
2,499,007	+		GFF2474	0.56	-1.1
2,499,007	+		GFF2474	0.56	+0.3
2,499,007	+		GFF2474	0.56	-1.9
2,499,007	+		GFF2474	0.56	-0.4
2,499,007	+		GFF2474	0.56	-0.8
2,499,007	+		GFF2474	0.56	-0.7
2,499,007	+		GFF2474	0.56	-1.3
2,499,015	-		GFF2474	0.57	+0.5
2,499,015	-		GFF2474	0.57	+0.1
2,499,015	-		GFF2474	0.57	-0.5
2,499,017	+		GFF2474	0.57	-0.3
2,499,025	-		GFF2474	0.58	-0.7
2,499,027	+		GFF2474	0.59	+0.8
2,499,032	+		GFF2474	0.60	-1.1
2,499,045	-		GFF2474	0.62	-0.9
2,499,057	-		GFF2474	0.64	+0.1
2,499,065	+		GFF2474	0.65	-1.7
2,499,075	+		GFF2474	0.67	+1.1
2,499,078	-		GFF2474	0.67	+0.4
2,499,080	+		GFF2474	0.67	-1.2
2,499,102	-		GFF2474	0.71	-0.2
2,499,111	+		GFF2474	0.73	+0.5
2,499,116	+		GFF2474	0.73	+0.0
2,499,118	+		GFF2474	0.74	-2.5
2,499,119	-		GFF2474	0.74	-1.5
2,499,142	+		GFF2474	0.78	+0.6
2,499,169	+		GFF2474	0.82	+0.2
2,499,169	+		GFF2474	0.82	+1.6
2,499,177	-		GFF2474	0.83	-2.2
2,499,192	-		GFF2474	0.86	-0.3
2,499,192	-		GFF2474	0.86	+0.6
2,499,202	-		GFF2474	0.87	-0.0
2,499,207	-		GFF2474	0.88	+1.7
2,499,207	-		GFF2474	0.88	+0.9
2,499,218	-				-0.6
2,499,221	+				+0.9
2,499,238	+				-0.2
2,499,246	-				+0.2
2,499,246	-				+0.5
2,499,246	-				-0.3
2,499,273	+				-1.6
2,499,281	-				-0.1
2,499,281	-				+0.9
2,499,317	-				+0.5
2,499,325	-				+0.9
2,499,325	-				-0.0
2,499,361	+				-0.1
2,499,361	+				-1.8
2,499,361	+				-0.6
2,499,369	-				+1.1
2,499,373	+				-0.1
2,499,373	+				-0.7
2,499,381	-				-1.0
2,499,381	-				-0.0
2,499,381	-				-2.5
2,499,427	+		GFF2475	0.15	+0.8
2,499,435	-		GFF2475	0.15	-1.1
2,499,528	-		GFF2475	0.26	-1.2
2,499,538	+		GFF2475	0.27	-0.2
2,499,546	-		GFF2475	0.28	-0.0
2,499,559	+		GFF2475	0.29	-2.4
2,499,561	-		GFF2475	0.29	-0.2
2,499,589	+		GFF2475	0.32	-0.2
2,499,589	+		GFF2475	0.32	-0.3
2,499,589	+		GFF2475	0.32	-0.7
2,499,589	+		GFF2475	0.32	-1.3
2,499,589	+		GFF2475	0.32	-1.4
2,499,589	+		GFF2475	0.32	+1.0
2,499,597	-		GFF2475	0.33	+0.4
2,499,597	-		GFF2475	0.33	-1.0
2,499,597	-		GFF2475	0.33	+0.4
2,499,597	-		GFF2475	0.33	-2.4
2,499,620	-		GFF2475	0.36	-0.7
2,499,643	-		GFF2475	0.38	+1.0