Strain Fitness in Sphingobium sp. HT1-2 around GFF2415

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,432,492	+		GFF2414	0.38	+0.8
2,432,492	+		GFF2414	0.38	-1.3
2,432,492	+		GFF2414	0.38	-0.8
2,432,492	+		GFF2414	0.38	-2.3
2,432,500	-		GFF2414	0.38	+0.6
2,432,500	-		GFF2414	0.38	+0.4
2,432,500	-		GFF2414	0.38	+0.3
2,432,500	-		GFF2414	0.38	-1.6
2,432,506	+		GFF2414	0.39	-0.0
2,432,508	+		GFF2414	0.39	+0.1
2,432,508	+		GFF2414	0.39	+0.7
2,432,516	-		GFF2414	0.39	-0.2
2,432,516	-		GFF2414	0.39	-0.4
2,432,516	-		GFF2414	0.39	+0.5
2,432,516	-		GFF2414	0.39	-0.3
2,432,516	-		GFF2414	0.39	-0.5
2,432,537	+		GFF2414	0.41	-0.2
2,432,538	-		GFF2414	0.41	-1.2
2,432,545	+		GFF2414	0.41	-1.0
2,432,547	+		GFF2414	0.42	-0.5
2,432,555	-		GFF2414	0.42	-0.9
2,432,555	-		GFF2414	0.42	+0.7
2,432,555	-		GFF2414	0.42	-0.4
2,432,555	-		GFF2414	0.42	+0.4
2,432,555	-		GFF2414	0.42	-0.0
2,432,600	+		GFF2414	0.45	-0.5
2,432,602	+		GFF2414	0.45	-0.7
2,432,626	+		GFF2414	0.47	+1.4
2,432,678	-		GFF2414	0.50	-0.7
2,432,681	+		GFF2414	0.51	+1.1
2,432,681	+		GFF2414	0.51	-1.1
2,432,689	-		GFF2414	0.51	-1.7
2,432,689	-		GFF2414	0.51	+0.2
2,432,689	-		GFF2414	0.51	-1.5
2,432,704	-		GFF2414	0.52	+0.8
2,432,710	-		GFF2414	0.53	+1.3
2,432,713	+		GFF2414	0.53	-0.7
2,432,723	+		GFF2414	0.53	+1.3
2,432,727	+		GFF2414	0.54	+0.7
2,432,727	+		GFF2414	0.54	-0.1
2,432,727	+		GFF2414	0.54	-1.6
2,432,727	+		GFF2414	0.54	-1.1
2,432,727	+		GFF2414	0.54	+0.0
2,432,727	+		GFF2414	0.54	-0.8
2,432,727	+		GFF2414	0.54	+1.1
2,432,727	+		GFF2414	0.54	-0.6
2,432,727	+		GFF2414	0.54	+0.4
2,432,727	+		GFF2414	0.54	-1.0
2,432,727	+		GFF2414	0.54	+0.0
2,432,727	+		GFF2414	0.54	+0.3
2,432,727	+		GFF2414	0.54	+2.1
2,432,735	-		GFF2414	0.54	-1.1
2,432,735	-		GFF2414	0.54	-0.2
2,432,735	-		GFF2414	0.54	+0.8
2,432,735	-		GFF2414	0.54	-0.3
2,432,735	-		GFF2414	0.54	+0.7
2,432,736	-		GFF2414	0.54	+0.7
2,432,737	+		GFF2414	0.54	+0.6
2,432,737	+		GFF2414	0.54	+0.7
2,432,737	+		GFF2414	0.54	-0.6
2,432,737	+		GFF2414	0.54	+0.5
2,432,740	-		GFF2414	0.55	-2.4
2,432,740	-		GFF2414	0.55	-0.1
2,432,745	-		GFF2414	0.55	-0.5
2,432,745	-		GFF2414	0.55	+0.6
2,432,745	-		GFF2414	0.55	+1.0
2,432,764	+		GFF2414	0.56	+0.2
2,432,772	-		GFF2414	0.57	-0.0
2,432,781	+		GFF2414	0.57	-1.7
2,432,781	+		GFF2414	0.57	-0.7
2,432,781	+		GFF2414	0.57	+0.2
2,432,781	+		GFF2414	0.57	-1.2
2,432,789	-		GFF2414	0.58	-0.3
2,432,789	-		GFF2414	0.58	+0.0
2,432,789	-		GFF2414	0.58	+0.3
2,432,789	-		GFF2414	0.58	-0.4
2,432,789	-		GFF2414	0.58	+0.0
2,432,796	+		GFF2414	0.58	-0.7
2,432,809	-		GFF2414	0.59	-1.9
2,432,820	-		GFF2414	0.60	-1.1
2,432,840	-		GFF2414	0.61	-1.1
2,432,968	+		GFF2414	0.70	-0.5
2,432,968	+		GFF2414	0.70	-0.5
2,432,971	-		GFF2414	0.70	-1.1
2,433,021	+		GFF2414	0.74	-0.6
2,433,028	+		GFF2414	0.74	-1.6
2,433,029	-		GFF2414	0.74	+0.6
2,433,048	-		GFF2414	0.75	+0.9
2,433,053	-		GFF2414	0.76	-0.3
2,433,124	-		GFF2414	0.81	+0.8
2,433,131	+		GFF2414	0.81	+0.3
2,433,131	+		GFF2414	0.81	-0.7
2,433,136	+		GFF2414	0.81	-0.7
2,433,139	-		GFF2414	0.82	-1.8
2,433,139	-		GFF2414	0.82	+0.1
2,433,141	+		GFF2414	0.82	+0.2
2,433,141	-		GFF2414	0.82	-0.3
2,433,177	-		GFF2414	0.84	+0.2
2,433,178	+		GFF2414	0.84	-0.2
2,433,182	-		GFF2414	0.84	+0.1
2,433,186	-		GFF2414	0.85	-0.3
2,433,207	+		GFF2414	0.86	+0.2
2,433,234	+		GFF2414	0.88	-0.3
2,433,236	-		GFF2414	0.88	-0.7
2,433,252	-		GFF2414	0.89	+0.1
2,433,261	-		GFF2414	0.90	+1.6
2,433,266	+				-0.8
2,433,287	+				-0.4
2,433,287	+				+1.6
2,433,287	+				+0.5
2,433,287	+				-2.5
2,433,287	+				+0.6
2,433,287	+				-1.5
2,433,287	+				-2.0
2,433,287	+				-0.8
2,433,287	+				+0.7
2,433,287	+				-1.7
2,433,292	+				+1.0
2,433,295	-				-1.0
2,433,295	-				-0.1
2,433,295	-				+1.0
2,433,295	-				-0.3
2,433,295	-				+0.3
2,433,295	-				+0.9
2,433,295	-				-0.2
2,433,295	-				-0.3
2,433,295	-				+0.7
2,433,295	-				+0.4
2,433,295	-				-0.4
2,433,295	-				-1.8
2,433,295	-				-0.3
2,433,295	-				+0.1
2,433,295	-				-0.2
2,433,295	-				-0.4
2,433,312	-				-1.2
2,433,337	+				+0.5
2,433,339	-				-0.4
2,433,386	-				-0.5
2,433,423	+				+0.6
2,433,423	-				-0.6
2,433,431	-				+0.5
2,433,431	-				-0.5
2,433,464	-				-0.1
2,433,475	-				-1.2
2,434,488	+				-0.3
2,434,488	+				-0.3
2,434,488	+				+0.2
2,434,488	+				+0.1
2,434,501	-				+1.5
2,434,521	+				-0.3
2,434,521	+				+1.1
2,434,521	+				+0.5
2,434,521	+				+0.2
2,434,529	-				-2.1
2,434,529	-				-1.3
2,434,547	+		GFF2416	0.11	-0.4
2,434,550	+		GFF2416	0.11	-0.3
2,434,559	+		GFF2416	0.12	-1.3
2,434,565	+		GFF2416	0.13	-1.7
2,434,600	-		GFF2416	0.16	-0.5
2,434,618	+		GFF2416	0.18	-1.1
2,434,674	-		GFF2416	0.24	-0.1
2,434,674	-		GFF2416	0.24	+0.4
2,434,759	-		GFF2416	0.33	+0.2
2,434,924	+		GFF2416	0.51	-1.1
2,434,939	+		GFF2416	0.53	-0.2
2,434,939	+		GFF2416	0.53	-1.1
2,434,974	-		GFF2416	0.57	-1.3
2,434,982	+		GFF2416	0.57	+0.7
2,435,046	-		GFF2416	0.64	+0.2
2,435,061	+		GFF2416	0.66	-0.4
2,435,069	-		GFF2416	0.67	-1.8
2,435,069	-		GFF2416	0.67	+1.1
2,435,069	-		GFF2416	0.67	-1.1
2,435,093	+		GFF2416	0.69	-1.4
2,435,101	-		GFF2416	0.70	+0.2
2,435,101	-		GFF2416	0.70	-1.3
2,435,152	-		GFF2416	0.76	-1.3
2,435,152	-		GFF2416	0.76	+1.3
2,435,183	+		GFF2416	0.79	-1.5
2,435,226	+		GFF2416	0.84	-1.5
2,435,276	+		GFF2416	0.89	-1.5
2,435,385	+				-0.7
2,435,390	+				-0.8
2,435,390	+				-0.8
2,435,390	+				-0.7
2,435,390	+				+0.2
2,435,390	+				-1.1
2,435,390	+				-0.6
2,435,390	+				+0.6
2,435,390	+				+0.9
2,435,390	+				-1.7
2,435,390	+				+0.7
2,435,390	+				-0.1
2,435,390	+				-2.1
2,435,390	+				-0.2
2,435,390	+				+0.1
2,435,390	+				-0.6
2,435,390	+				-0.4
2,435,390	+				-1.4
2,435,390	+				+0.4
2,435,390	+				+0.2
2,435,390	+				-0.3
2,435,390	+				-0.2
2,435,390	+				+0.3
2,435,395	+				-0.5
2,435,398	-				+0.2
2,435,398	-				+0.2
2,435,398	-				-0.1
2,435,398	-				-2.4
2,435,398	-				+0.4
2,435,398	-				-0.4
2,435,398	-				-1.3
2,435,398	-				-0.2
2,435,398	-				-0.5
2,435,398	-				-0.3
2,435,398	-				+0.9
2,435,398	-				+0.3
2,435,398	-				-0.1
2,435,403	-				-0.4
2,435,404	+				+0.7
2,435,412	-				-1.5
2,435,412	-				+0.3
2,435,412	-				-0.2
2,435,412	-				+1.7
2,435,412	-				-1.8
2,435,412	-				-0.6
2,435,412	-				+0.5
2,435,435	+				+1.3