Strain Fitness in Sphingobium sp. HT1-2 around GFF241

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF240 and GFF241 are separated by 65 nucleotidesGFF241 and GFF242 are separated by 142 nucleotidesGFF242 and GFF243 overlap by 8 nucleotides GFF240 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 244,408 to 245,916 GFF240 GFF241 - hypothetical protein, at 245,982 to 246,404 GFF241 GFF242 - Ribonuclease T2 family protein, at 246,547 to 247,254 GFF242 GFF243 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 247,247 to 248,101 GFF243 Position (kb) 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1at 245.133 kb on + strand, within GFF240at 245.134 kb on + strand, within GFF240at 245.142 kb on - strand, within GFF240at 245.150 kb on + strand, within GFF240at 245.158 kb on - strand, within GFF240at 245.205 kb on - strand, within GFF240at 245.205 kb on - strand, within GFF240at 245.212 kb on + strand, within GFF240at 245.236 kb on - strand, within GFF240at 245.236 kb on - strand, within GFF240at 245.297 kb on - strand, within GFF240at 245.322 kb on - strand, within GFF240at 245.322 kb on - strand, within GFF240at 245.400 kb on + strand, within GFF240at 245.400 kb on + strand, within GFF240at 245.403 kb on - strand, within GFF240at 245.423 kb on - strand, within GFF240at 245.449 kb on + strand, within GFF240at 245.457 kb on - strand, within GFF240at 245.524 kb on + strand, within GFF240at 245.524 kb on + strand, within GFF240at 245.532 kb on - strand, within GFF240at 245.608 kb on - strand, within GFF240at 245.632 kb on + strand, within GFF240at 245.632 kb on + strand, within GFF240at 245.640 kb on - strand, within GFF240at 245.640 kb on - strand, within GFF240at 245.657 kb on - strand, within GFF240at 245.691 kb on - strand, within GFF240at 245.691 kb on - strand, within GFF240at 245.701 kb on + strand, within GFF240at 245.720 kb on + strand, within GFF240at 245.730 kb on + strand, within GFF240at 245.730 kb on + strand, within GFF240at 245.796 kb on - strandat 245.828 kb on - strandat 245.885 kb on + strandat 245.911 kb on + strandat 245.911 kb on + strandat 245.931 kb on - strandat 245.962 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.965 kb on - strandat 245.972 kb on - strandat 245.972 kb on - strandat 245.972 kb on - strandat 245.987 kb on + strandat 246.023 kb on - strandat 246.072 kb on - strand, within GFF241at 246.092 kb on - strand, within GFF241at 246.137 kb on - strand, within GFF241at 246.137 kb on - strand, within GFF241at 246.193 kb on + strand, within GFF241at 246.253 kb on + strand, within GFF241at 246.278 kb on + strand, within GFF241at 246.286 kb on - strand, within GFF241at 246.360 kb on - strand, within GFF241at 246.368 kb on - strandat 246.457 kb on + strandat 246.457 kb on + strandat 246.457 kb on + strandat 246.465 kb on - strandat 246.467 kb on + strandat 246.467 kb on + strandat 246.475 kb on - strandat 246.477 kb on + strandat 246.485 kb on - strandat 246.499 kb on - strandat 246.511 kb on - strandat 246.543 kb on + strandat 246.543 kb on - strandat 246.552 kb on - strandat 246.563 kb on + strandat 246.563 kb on + strandat 246.581 kb on - strandat 246.595 kb on + strandat 246.635 kb on + strand, within GFF242at 246.635 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.641 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.665 kb on - strand, within GFF242at 246.704 kb on + strand, within GFF242at 246.706 kb on - strand, within GFF242at 246.709 kb on + strand, within GFF242at 246.709 kb on + strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.727 kb on - strand, within GFF242at 246.777 kb on + strand, within GFF242at 246.785 kb on - strand, within GFF242at 246.790 kb on - strand, within GFF242at 246.792 kb on + strand, within GFF242at 246.792 kb on + strand, within GFF242at 246.795 kb on - strand, within GFF242at 246.843 kb on + strand, within GFF242at 246.858 kb on + strand, within GFF242at 246.874 kb on - strand, within GFF242at 246.885 kb on + strand, within GFF242at 246.893 kb on - strand, within GFF242at 246.899 kb on + strand, within GFF242at 246.923 kb on - strand, within GFF242at 246.962 kb on - strand, within GFF242at 247.030 kb on + strand, within GFF242at 247.077 kb on + strand, within GFF242at 247.131 kb on + strand, within GFF242at 247.169 kb on + strand, within GFF242at 247.187 kb on + strandat 247.187 kb on + strandat 247.193 kb on + strandat 247.193 kb on + strandat 247.193 kb on + strandat 247.198 kb on + strandat 247.208 kb on + strandat 247.222 kb on - strandat 247.237 kb on - strandat 247.252 kb on - strandat 247.257 kb on + strandat 247.274 kb on + strandat 247.285 kb on + strandat 247.321 kb on - strandat 247.359 kb on - strand, within GFF243at 247.371 kb on - strand, within GFF243at 247.392 kb on + strand, within GFF243

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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245,133 + GFF240 0.48 -0.9
245,134 + GFF240 0.48 -1.3
245,142 - GFF240 0.49 -0.8
245,150 + GFF240 0.49 +0.5
245,158 - GFF240 0.50 -1.2
245,205 - GFF240 0.53 +1.2
245,205 - GFF240 0.53 +0.5
245,212 + GFF240 0.53 -1.1
245,236 - GFF240 0.55 +0.6
245,236 - GFF240 0.55 +0.7
245,297 - GFF240 0.59 +0.3
245,322 - GFF240 0.61 -1.2
245,322 - GFF240 0.61 -0.5
245,400 + GFF240 0.66 -0.1
245,400 + GFF240 0.66 +0.8
245,403 - GFF240 0.66 +0.5
245,423 - GFF240 0.67 +1.0
245,449 + GFF240 0.69 -0.6
245,457 - GFF240 0.70 +0.1
245,524 + GFF240 0.74 -2.9
245,524 + GFF240 0.74 -0.4
245,532 - GFF240 0.74 +0.2
245,608 - GFF240 0.80 -0.6
245,632 + GFF240 0.81 -0.2
245,632 + GFF240 0.81 +1.1
245,640 - GFF240 0.82 +1.1
245,640 - GFF240 0.82 +0.1
245,657 - GFF240 0.83 +0.2
245,691 - GFF240 0.85 +0.2
245,691 - GFF240 0.85 +0.4
245,701 + GFF240 0.86 -0.3
245,720 + GFF240 0.87 -0.4
245,730 + GFF240 0.88 -0.1
245,730 + GFF240 0.88 -0.4
245,796 - +0.8
245,828 - +1.2
245,885 + -0.4
245,911 + -0.9
245,911 + +0.2
245,931 - -0.2
245,962 + +0.6
245,964 + +1.0
245,964 + -0.1
245,964 + -0.4
245,964 + -0.1
245,964 + -0.2
245,964 + +0.8
245,964 + -0.4
245,965 - +0.9
245,972 - -1.1
245,972 - -0.4
245,972 - +1.4
245,987 + -0.9
246,023 - +0.0
246,072 - GFF241 0.21 +0.4
246,092 - GFF241 0.26 +0.1
246,137 - GFF241 0.37 -0.6
246,137 - GFF241 0.37 -0.8
246,193 + GFF241 0.50 +0.7
246,253 + GFF241 0.64 +1.1
246,278 + GFF241 0.70 -0.8
246,286 - GFF241 0.72 -2.2
246,360 - GFF241 0.89 -0.3
246,368 - -0.9
246,457 + -1.9
246,457 + -2.2
246,457 + +1.2
246,465 - -0.9
246,467 + -0.4
246,467 + -2.6
246,475 - -0.5
246,477 + -0.6
246,485 - +0.1
246,499 - -2.1
246,511 - +0.1
246,543 + +1.5
246,543 - +0.2
246,552 - -1.1
246,563 + -1.0
246,563 + -1.0
246,581 - -1.7
246,595 + +0.2
246,635 + GFF242 0.12 -1.4
246,635 + GFF242 0.12 -0.8
246,640 + GFF242 0.13 -0.3
246,640 + GFF242 0.13 -1.5
246,640 + GFF242 0.13 -0.2
246,641 - GFF242 0.13 +0.2
246,648 - GFF242 0.14 -1.9
246,648 - GFF242 0.14 -0.8
246,648 - GFF242 0.14 -0.4
246,665 - GFF242 0.17 +1.2
246,704 + GFF242 0.22 -1.1
246,706 - GFF242 0.22 +0.0
246,709 + GFF242 0.23 +0.0
246,709 + GFF242 0.23 -0.1
246,712 - GFF242 0.23 -1.3
246,712 - GFF242 0.23 -0.2
246,727 - GFF242 0.25 +0.5
246,777 + GFF242 0.32 +1.0
246,785 - GFF242 0.34 +1.0
246,790 - GFF242 0.34 +1.1
246,792 + GFF242 0.35 +0.2
246,792 + GFF242 0.35 +0.1
246,795 - GFF242 0.35 +1.4
246,843 + GFF242 0.42 +0.8
246,858 + GFF242 0.44 -0.5
246,874 - GFF242 0.46 +1.2
246,885 + GFF242 0.48 -1.1
246,893 - GFF242 0.49 -0.3
246,899 + GFF242 0.50 +0.2
246,923 - GFF242 0.53 -1.2
246,962 - GFF242 0.59 -0.9
247,030 + GFF242 0.68 +0.5
247,077 + GFF242 0.75 -0.6
247,131 + GFF242 0.82 -1.3
247,169 + GFF242 0.88 +0.3
247,187 + +0.6
247,187 + -2.0
247,193 + -2.4
247,193 + +0.8
247,193 + +0.0
247,198 + -2.3
247,208 + -0.1
247,222 - -1.8
247,237 - +0.7
247,252 - -1.5
247,257 + -0.5
247,274 + -1.3
247,285 + -0.3
247,321 - -1.2
247,359 - GFF243 0.13 +0.7
247,371 - GFF243 0.15 +0.8
247,392 + GFF243 0.17 +0.0

Or see this region's nucleotide sequence