Strain Fitness in Sphingobium sp. HT1-2 around GFF2399

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,419,510	+				-0.1
2,419,510	+				-1.6
2,419,514	-				+0.6
2,419,542	-				+0.4
2,419,544	+				+0.0
2,419,544	+				-0.6
2,419,544	+				+0.3
2,419,544	+				+0.5
2,419,544	+				-0.4
2,419,544	+				+0.6
2,419,544	+				-0.2
2,419,544	+				-0.6
2,419,544	+				-1.8
2,419,544	+				-1.3
2,419,544	+				-1.5
2,419,552	-				-0.7
2,419,552	-				-1.9
2,419,552	-				-0.8
2,419,552	-				+1.1
2,419,552	-				+0.7
2,419,552	-				+0.1
2,419,552	-				+1.6
2,419,552	-				+0.5
2,419,552	-				+0.6
2,419,552	-				+0.2
2,419,552	-				+0.1
2,419,552	-				-1.3
2,419,552	-				-1.2
2,419,552	-				-0.8
2,419,558	+				+0.0
2,419,558	+				+0.9
2,419,562	-				+0.7
2,419,628	+				-0.2
2,419,689	-		GFF2398	0.14	+0.4
2,419,695	+		GFF2398	0.14	-0.8
2,419,720	-		GFF2398	0.18	+0.2
2,419,720	-		GFF2398	0.18	+0.5
2,419,754	-		GFF2398	0.22	+1.5
2,419,756	+		GFF2398	0.22	+1.3
2,419,764	-		GFF2398	0.23	+0.3
2,419,784	+		GFF2398	0.26	-0.9
2,419,784	+		GFF2398	0.26	-1.4
2,419,806	-		GFF2398	0.29	-1.5
2,419,808	+		GFF2398	0.29	-1.9
2,419,816	-		GFF2398	0.30	-0.3
2,419,847	+		GFF2398	0.34	-0.0
2,419,855	-		GFF2398	0.35	+0.9
2,419,855	-		GFF2398	0.35	-1.7
2,419,855	-		GFF2398	0.35	-0.8
2,419,855	-		GFF2398	0.35	+0.7
2,419,870	+		GFF2398	0.37	+1.0
2,419,878	-		GFF2398	0.38	-0.4
2,419,878	-		GFF2398	0.38	-0.4
2,419,897	-		GFF2398	0.40	+0.0
2,419,897	-		GFF2398	0.40	+0.2
2,419,898	-		GFF2398	0.41	-1.8
2,419,901	+		GFF2398	0.41	-0.1
2,419,916	+		GFF2398	0.43	-1.1
2,419,928	+		GFF2398	0.44	-0.7
2,419,934	+		GFF2398	0.45	-1.1
2,419,934	+		GFF2398	0.45	-1.4
2,419,934	+		GFF2398	0.45	-0.3
2,419,935	-		GFF2398	0.45	+0.6
2,419,942	-		GFF2398	0.46	+1.9
2,419,949	-		GFF2398	0.47	-0.5
2,419,950	+		GFF2398	0.47	-1.1
2,419,958	-		GFF2398	0.48	+0.5
2,419,958	-		GFF2398	0.48	+0.5
2,419,987	+		GFF2398	0.52	+2.2
2,419,995	-		GFF2398	0.53	-1.3
2,420,028	+		GFF2398	0.57	+0.6
2,420,031	-		GFF2398	0.58	-2.4
2,420,031	-		GFF2398	0.58	-0.3
2,420,033	+		GFF2398	0.58	+1.7
2,420,041	+		GFF2398	0.59	-0.9
2,420,065	-		GFF2398	0.62	-0.8
2,420,065	-		GFF2398	0.62	-1.2
2,420,072	+		GFF2398	0.63	-0.0
2,420,084	-		GFF2398	0.64	-1.6
2,420,084	-		GFF2398	0.64	-0.8
2,420,100	+		GFF2398	0.66	-0.4
2,420,128	-		GFF2398	0.70	+0.3
2,420,229	+		GFF2398	0.83	-1.3
2,420,279	+		GFF2398	0.89	-0.9
2,420,279	+		GFF2398	0.89	+0.5
2,420,287	-				+0.1
2,420,287	-				-0.7
2,420,287	-				-1.8
2,420,300	+				+0.3
2,420,324	-				+0.1
2,420,324	-				-2.0
2,420,331	+				-0.4
2,420,339	-				-0.3
2,420,344	-				-0.2
2,420,344	-				+0.3
2,420,357	+				-0.7
2,420,359	+				-0.6
2,420,359	+				-1.5
2,420,375	+				-0.4
2,420,375	+				-0.3
2,420,394	+				-0.9
2,420,395	+				-0.2
2,420,395	+				-2.2
2,420,395	+				-0.0
2,420,395	+				-1.3
2,420,403	-				-0.5
2,420,403	-				-2.0
2,420,403	-				+0.1
2,420,403	-				+1.1
2,420,420	+				+0.7
2,420,456	-				-0.5
2,420,487	-				-0.5
2,420,493	+				-2.3
2,420,493	+				-1.8
2,420,501	-				-0.7
2,420,522	-				-0.7
2,421,004	-				-1.4
2,421,010	+				-0.1
2,421,010	+				+0.9
2,421,012	+				-0.1
2,421,012	+				-0.3
2,421,012	+				-0.9
2,421,012	+				-1.3
2,421,020	-				-0.5
2,421,020	-				-0.6
2,421,037	+				-1.2
2,421,040	-				-1.3
2,421,045	-				-0.3
2,421,045	-				-2.0
2,421,049	-				+0.8
2,421,062	-				-0.8
2,421,064	-				-1.3
2,421,074	+				+0.7
2,421,074	+				-1.3
2,421,074	+				+0.4
2,421,074	+				+0.2
2,421,074	+				-0.6
2,421,074	+				-1.0
2,421,077	-				+0.4
2,421,082	-				-0.8
2,421,082	-				+1.1
2,421,082	-				-0.3
2,421,082	-				+0.4
2,421,082	-				-0.6
2,421,082	-				+0.9
2,421,082	-				+0.7
2,421,082	-				-0.3
2,421,082	-				-1.4
2,421,082	-				-1.4
2,421,082	-				+2.4
2,421,082	-				-0.2
2,421,082	-				-0.8
2,421,082	-				-0.8
2,421,087	-				+1.1
2,421,105	+		GFF2400	0.12	+1.3
2,421,108	-		GFF2400	0.12	+0.9
2,421,122	+		GFF2400	0.14	-1.3
2,421,122	+		GFF2400	0.14	+0.6
2,421,125	-		GFF2400	0.14	-1.6
2,421,126	-		GFF2400	0.14	+0.3
2,421,130	-		GFF2400	0.15	+0.9
2,421,130	-		GFF2400	0.15	-1.8
2,421,130	-		GFF2400	0.15	-1.1
2,421,130	-		GFF2400	0.15	-0.2
2,421,130	-		GFF2400	0.15	-0.1
2,421,130	-		GFF2400	0.15	-1.0
2,421,130	-		GFF2400	0.15	-0.3
2,421,130	-		GFF2400	0.15	+0.7
2,421,135	+		GFF2400	0.15	-0.4
2,421,158	+		GFF2400	0.18	+0.2
2,421,164	+		GFF2400	0.18	-1.8
2,421,172	-		GFF2400	0.19	+0.8
2,421,172	-		GFF2400	0.19	+0.7
2,421,172	-		GFF2400	0.19	+0.4
2,421,172	-		GFF2400	0.19	-0.3
2,421,260	-		GFF2400	0.29	-0.7
2,421,292	-		GFF2400	0.32	-1.8
2,421,292	-		GFF2400	0.32	-1.6
2,421,366	-		GFF2400	0.41	-0.6
2,421,388	-		GFF2400	0.43	-0.5
2,421,388	-		GFF2400	0.43	-0.4
2,421,404	+		GFF2400	0.45	+0.8
2,421,430	+		GFF2400	0.48	-1.2
2,421,442	+		GFF2400	0.49	+0.3
2,421,449	+		GFF2400	0.50	-0.8
2,421,451	-		GFF2400	0.50	-0.5
2,421,455	+		GFF2400	0.50	-1.3
2,421,463	-		GFF2400	0.51	-0.6
2,421,463	-		GFF2400	0.51	-2.0
2,421,463	-		GFF2400	0.51	+0.0
2,421,463	-		GFF2400	0.51	-1.4
2,421,478	-		GFF2400	0.53	+0.0
2,421,488	+		GFF2400	0.54	-0.1
2,421,488	+		GFF2400	0.54	-1.2
2,421,496	-		GFF2400	0.55	-1.1
2,421,496	-		GFF2400	0.55	+0.0
2,421,498	+		GFF2400	0.55	-1.3
2,421,501	-		GFF2400	0.56	-1.1
2,421,528	-		GFF2400	0.58	+0.2
2,421,532	-		GFF2400	0.59	-2.0
2,421,536	-		GFF2400	0.59	+0.8
2,421,538	-		GFF2400	0.60	-0.7
2,421,580	-		GFF2400	0.64	-0.1
2,421,616	-		GFF2400	0.68	-2.0
2,421,631	+		GFF2400	0.70	-0.5
2,421,639	-		GFF2400	0.71	-1.0
2,421,639	-		GFF2400	0.71	-0.6
2,421,701	+		GFF2400	0.78	-2.0
2,421,701	+		GFF2400	0.78	+0.3
2,421,701	+		GFF2400	0.78	-3.6
2,421,709	-		GFF2400	0.78	-0.1
2,421,709	-		GFF2400	0.78	+0.6
2,421,709	-		GFF2400	0.78	-1.1
2,421,711	+		GFF2400	0.79	-0.3
2,421,711	+		GFF2400	0.79	-0.1
2,421,711	+		GFF2400	0.79	-1.4
2,421,712	+		GFF2400	0.79	+0.3
2,421,719	-		GFF2400	0.80	-1.5
2,421,745	-		GFF2400	0.82	+0.0
2,421,772	+		GFF2400	0.85	-0.4
2,421,822	-				-0.3
2,421,838	+				-1.1
2,421,868	+				-0.5
2,421,877	-				-0.6
2,421,885	-				-1.8
2,421,887	+				-0.4
2,421,897	+				-0.0
2,421,897	+				-1.8
2,421,897	+				-1.1
2,421,897	+				-0.5
2,421,905	-				-0.3
2,421,905	-				+0.1
2,421,905	-				-1.4
2,421,905	-				-0.7
2,421,905	-				-0.3
2,421,909	+				-0.3
2,421,909	+				+1.1
2,421,909	+				+0.6
2,421,909	+				-2.3
2,421,917	-				+0.7
2,421,917	-				+0.7
2,421,917	-				-0.9
2,421,917	-				-0.1
2,421,917	-				+1.2
2,421,917	-				-3.3
2,421,942	-		GFF2401	0.12	-0.8
2,421,945	-		GFF2401	0.13	-0.4