Strain Fitness in Sphingobium sp. HT1-2 around GFF231

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF230 and GFF231 overlap by 4 nucleotidesGFF231 and GFF232 are separated by 55 nucleotidesGFF232 and GFF233 are separated by 121 nucleotides GFF230 - Two-component transcriptional response regulator, LuxR family, at 234,544 to 235,347 GFF230 GFF231 - Autolysin sensor kinase (EC 2.7.3.-), at 235,344 to 236,450 GFF231 GFF232 - Transcriptional regulator, HxlR family, at 236,506 to 236,988 GFF232 GFF233 - 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11, at 237,110 to 239,215 GFF233 Position (kb) 235 236 237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 234.349 kb on + strandat 234.357 kb on - strandat 234.357 kb on - strandat 234.357 kb on - strandat 234.423 kb on + strandat 234.483 kb on + strandat 234.483 kb on + strandat 234.483 kb on + strandat 234.483 kb on + strandat 234.483 kb on + strandat 234.483 kb on + strandat 234.483 kb on + strandat 234.483 kb on + strandat 234.483 kb on + strandat 234.491 kb on - strandat 234.491 kb on - strandat 234.491 kb on - strandat 234.491 kb on - strandat 234.491 kb on - strandat 234.491 kb on - strandat 234.491 kb on - strandat 234.491 kb on - strandat 234.491 kb on - strandat 234.492 kb on + strandat 234.515 kb on + strandat 234.523 kb on - strandat 234.523 kb on - strandat 234.523 kb on - strandat 234.538 kb on + strandat 235.380 kb on - strandat 236.430 kb on - strandat 236.430 kb on - strandat 236.430 kb on - strandat 236.430 kb on - strandat 236.437 kb on + strandat 236.444 kb on - strandat 236.467 kb on - strandat 236.472 kb on - strandat 236.524 kb on + strandat 236.524 kb on + strandat 236.538 kb on + strandat 236.544 kb on - strandat 236.558 kb on + strand, within GFF232at 236.558 kb on + strand, within GFF232at 236.566 kb on - strand, within GFF232at 236.566 kb on - strand, within GFF232at 236.566 kb on - strand, within GFF232at 236.577 kb on + strand, within GFF232at 236.577 kb on + strand, within GFF232at 236.577 kb on + strand, within GFF232at 236.577 kb on + strand, within GFF232at 236.585 kb on - strand, within GFF232at 236.585 kb on - strand, within GFF232at 236.590 kb on + strand, within GFF232at 236.590 kb on + strand, within GFF232at 236.590 kb on + strand, within GFF232at 236.598 kb on - strand, within GFF232at 236.620 kb on + strand, within GFF232at 236.620 kb on + strand, within GFF232at 236.628 kb on - strand, within GFF232at 236.638 kb on - strand, within GFF232at 236.652 kb on + strand, within GFF232at 236.652 kb on - strand, within GFF232at 236.654 kb on + strand, within GFF232at 236.674 kb on + strand, within GFF232at 236.716 kb on + strand, within GFF232at 236.721 kb on + strand, within GFF232at 236.753 kb on + strand, within GFF232at 236.761 kb on - strand, within GFF232at 236.785 kb on - strand, within GFF232at 236.785 kb on - strand, within GFF232at 236.785 kb on - strand, within GFF232at 236.832 kb on - strand, within GFF232at 236.863 kb on - strand, within GFF232at 236.901 kb on + strand, within GFF232at 236.902 kb on + strand, within GFF232at 236.912 kb on + strand, within GFF232at 236.915 kb on - strand, within GFF232at 236.915 kb on - strand, within GFF232at 236.920 kb on - strand, within GFF232at 236.924 kb on + strand, within GFF232at 236.925 kb on - strand, within GFF232at 236.925 kb on - strand, within GFF232at 236.925 kb on - strand, within GFF232at 236.932 kb on - strand, within GFF232at 236.932 kb on - strand, within GFF232at 236.958 kb on + strandat 236.964 kb on - strandat 237.032 kb on + strandat 237.043 kb on + strandat 237.051 kb on - strandat 237.080 kb on + strandat 237.115 kb on + strandat 237.116 kb on + strandat 237.120 kb on + strandat 237.128 kb on - strandat 237.139 kb on + strandat 237.161 kb on - strandat 237.162 kb on + strandat 237.183 kb on - strandat 237.200 kb on + strandat 237.208 kb on - strandat 237.238 kb on + strandat 237.238 kb on + strandat 237.243 kb on + strandat 237.263 kb on + strandat 237.267 kb on + strandat 237.267 kb on + strandat 237.275 kb on - strandat 237.275 kb on - strandat 237.280 kb on - strandat 237.312 kb on + strandat 237.319 kb on + strandat 237.322 kb on + strand, within GFF233at 237.346 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.383 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.424 kb on + strand, within GFF233at 237.424 kb on - strand, within GFF233at 237.426 kb on - strand, within GFF233at 237.426 kb on - strand, within GFF233at 237.426 kb on - strand, within GFF233at 237.432 kb on - strand, within GFF233at 237.432 kb on - strand, within GFF233at 237.432 kb on - strand, within GFF233

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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234,349 + +0.4
234,357 - -0.9
234,357 - -1.2
234,357 - -2.6
234,423 + +0.7
234,483 + -1.5
234,483 + -0.6
234,483 + +0.6
234,483 + -0.8
234,483 + -1.7
234,483 + +0.7
234,483 + -1.7
234,483 + +0.4
234,483 + +1.5
234,491 - -0.3
234,491 - -0.5
234,491 - -1.6
234,491 - -0.1
234,491 - +0.5
234,491 - -0.6
234,491 - -0.3
234,491 - +0.2
234,491 - -0.6
234,492 + -0.4
234,515 + +0.2
234,523 - -0.3
234,523 - +0.2
234,523 - +1.5
234,538 + +0.1
235,380 - +0.6
236,430 - -0.2
236,430 - -0.5
236,430 - +1.0
236,430 - -1.3
236,437 + +1.8
236,444 - +0.8
236,467 - -0.1
236,472 - -0.4
236,524 + -2.1
236,524 + -0.1
236,538 + -1.1
236,544 - -1.6
236,558 + GFF232 0.11 -2.0
236,558 + GFF232 0.11 +0.8
236,566 - GFF232 0.12 +0.5
236,566 - GFF232 0.12 -0.2
236,566 - GFF232 0.12 -0.1
236,577 + GFF232 0.15 +0.0
236,577 + GFF232 0.15 -1.2
236,577 + GFF232 0.15 +0.7
236,577 + GFF232 0.15 -0.6
236,585 - GFF232 0.16 +0.7
236,585 - GFF232 0.16 -1.6
236,590 + GFF232 0.17 +0.1
236,590 + GFF232 0.17 -1.6
236,590 + GFF232 0.17 +0.5
236,598 - GFF232 0.19 -0.6
236,620 + GFF232 0.24 -0.3
236,620 + GFF232 0.24 +0.8
236,628 - GFF232 0.25 +0.0
236,638 - GFF232 0.27 -1.2
236,652 + GFF232 0.30 +1.3
236,652 - GFF232 0.30 -2.0
236,654 + GFF232 0.31 -0.3
236,674 + GFF232 0.35 -0.2
236,716 + GFF232 0.43 -1.5
236,721 + GFF232 0.45 +1.1
236,753 + GFF232 0.51 +0.3
236,761 - GFF232 0.53 +0.8
236,785 - GFF232 0.58 -0.1
236,785 - GFF232 0.58 -0.2
236,785 - GFF232 0.58 +1.0
236,832 - GFF232 0.67 +0.7
236,863 - GFF232 0.74 +0.8
236,901 + GFF232 0.82 -0.5
236,902 + GFF232 0.82 -0.1
236,912 + GFF232 0.84 +0.6
236,915 - GFF232 0.85 +0.6
236,915 - GFF232 0.85 -0.6
236,920 - GFF232 0.86 -2.0
236,924 + GFF232 0.87 +0.4
236,925 - GFF232 0.87 -0.6
236,925 - GFF232 0.87 -0.2
236,925 - GFF232 0.87 -0.6
236,932 - GFF232 0.88 +0.5
236,932 - GFF232 0.88 -2.0
236,958 + +0.9
236,964 - -0.7
237,032 + -1.2
237,043 + -0.1
237,051 - -0.5
237,080 + +1.4
237,115 + -1.6
237,116 + +0.9
237,120 + -3.5
237,128 - -2.1
237,139 + -2.8
237,161 - -1.9
237,162 + -1.6
237,183 - -1.1
237,200 + -3.3
237,208 - -1.5
237,238 + -2.8
237,238 + -2.5
237,243 + -1.7
237,263 + -1.8
237,267 + -2.9
237,267 + -2.4
237,275 - -2.0
237,275 - -0.6
237,280 - -1.2
237,312 + -2.0
237,319 + -2.3
237,322 + GFF233 0.10 -3.8
237,346 + GFF233 0.11 -2.2
237,351 + GFF233 0.11 -1.9
237,351 + GFF233 0.11 -0.7
237,351 + GFF233 0.11 -2.1
237,351 + GFF233 0.11 +0.2
237,351 + GFF233 0.11 -1.2
237,359 - GFF233 0.12 -0.7
237,359 - GFF233 0.12 -2.9
237,359 - GFF233 0.12 -1.1
237,359 - GFF233 0.12 -0.9
237,359 - GFF233 0.12 -2.7
237,359 - GFF233 0.12 -2.1
237,359 - GFF233 0.12 -1.3
237,383 + GFF233 0.13 -0.4
237,418 + GFF233 0.15 -0.5
237,418 + GFF233 0.15 -1.9
237,418 + GFF233 0.15 +0.4
237,418 + GFF233 0.15 -0.1
237,418 + GFF233 0.15 -0.9
237,418 + GFF233 0.15 +0.8
237,418 + GFF233 0.15 -1.6
237,424 + GFF233 0.15 -1.5
237,424 - GFF233 0.15 -1.7
237,426 - GFF233 0.15 -2.2
237,426 - GFF233 0.15 -1.8
237,426 - GFF233 0.15 -1.3
237,432 - GFF233 0.15 -1.2
237,432 - GFF233 0.15 +0.8
237,432 - GFF233 0.15 -1.5

Or see this region's nucleotide sequence