Strain Fitness in Sphingobium sp. HT1-2 around GFF2301

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,327,357	+		GFF2300	0.12	+0.6
2,327,370	+		GFF2300	0.13	+1.2
2,327,370	-		GFF2300	0.13	-0.1
2,327,370	-		GFF2300	0.13	-0.8
2,327,378	-		GFF2300	0.14	-0.9
2,327,378	-		GFF2300	0.14	+0.4
2,327,383	-		GFF2300	0.14	+1.0
2,327,398	+		GFF2300	0.16	-0.8
2,327,419	+		GFF2300	0.18	-1.0
2,327,420	+		GFF2300	0.18	-1.3
2,327,427	+		GFF2300	0.19	-0.3
2,327,427	+		GFF2300	0.19	+1.8
2,327,428	-		GFF2300	0.19	-1.8
2,327,428	-		GFF2300	0.19	-1.4
2,327,435	-		GFF2300	0.19	-0.4
2,327,435	-		GFF2300	0.19	-1.6
2,327,463	+		GFF2300	0.22	+0.6
2,327,475	+		GFF2300	0.23	+1.6
2,327,507	+		GFF2300	0.27	+0.6
2,327,515	-		GFF2300	0.27	-1.2
2,327,517	+		GFF2300	0.28	-0.9
2,327,522	+		GFF2300	0.28	-2.7
2,327,536	-		GFF2300	0.29	-0.7
2,327,541	-		GFF2300	0.30	-1.2
2,327,541	-		GFF2300	0.30	-0.2
2,327,547	+		GFF2300	0.31	-0.9
2,327,548	-		GFF2300	0.31	+0.5
2,327,606	-		GFF2300	0.36	-0.8
2,327,642	-		GFF2300	0.40	-0.6
2,327,689	+		GFF2300	0.45	-0.7
2,327,710	+		GFF2300	0.47	-0.2
2,327,724	-		GFF2300	0.48	-1.0
2,327,725	-		GFF2300	0.48	+0.2
2,327,755	-		GFF2300	0.51	-0.8
2,327,810	-		GFF2300	0.57	-0.2
2,327,810	-		GFF2300	0.57	-2.3
2,327,817	+		GFF2300	0.58	-1.6
2,327,819	-		GFF2300	0.58	+0.3
2,327,819	-		GFF2300	0.58	+0.8
2,327,820	-		GFF2300	0.58	-0.8
2,327,824	+		GFF2300	0.58	+0.2
2,327,824	+		GFF2300	0.58	-0.5
2,327,824	+		GFF2300	0.58	-1.2
2,327,824	+		GFF2300	0.58	-1.3
2,327,829	+		GFF2300	0.59	-1.8
2,327,829	+		GFF2300	0.59	-0.2
2,327,829	+		GFF2300	0.59	+0.7
2,327,832	-		GFF2300	0.59	-1.2
2,327,834	+		GFF2300	0.59	-2.0
2,327,837	-		GFF2300	0.60	-1.9
2,327,837	-		GFF2300	0.60	-0.4
2,327,837	-		GFF2300	0.60	+0.5
2,327,837	-		GFF2300	0.60	-2.1
2,327,848	+		GFF2300	0.61	+0.5
2,327,852	-		GFF2300	0.61	+1.7
2,327,856	+		GFF2300	0.61	-1.6
2,327,856	+		GFF2300	0.61	-1.3
2,327,864	-		GFF2300	0.62	+0.8
2,327,864	-		GFF2300	0.62	+0.2
2,327,874	+		GFF2300	0.63	-0.0
2,327,881	+		GFF2300	0.64	-1.7
2,327,884	-		GFF2300	0.64	-0.9
2,327,884	-		GFF2300	0.64	-1.2
2,327,888	+		GFF2300	0.65	+0.7
2,327,888	-		GFF2300	0.65	-0.5
2,327,889	-		GFF2300	0.65	+1.4
2,327,906	-		GFF2300	0.66	+1.2
2,327,948	+		GFF2300	0.71	-0.1
2,327,948	+		GFF2300	0.71	+0.2
2,327,948	+		GFF2300	0.71	+1.2
2,327,948	+		GFF2300	0.71	+0.0
2,327,948	+		GFF2300	0.71	-0.2
2,327,948	+		GFF2300	0.71	-0.0
2,327,948	+		GFF2300	0.71	-0.1
2,327,948	+		GFF2300	0.71	+0.2
2,327,949	-		GFF2300	0.71	-0.1
2,327,956	-		GFF2300	0.71	-1.0
2,327,956	-		GFF2300	0.71	+0.4
2,327,956	-		GFF2300	0.71	-0.1
2,327,956	-		GFF2300	0.71	-1.2
2,327,971	+		GFF2300	0.73	+0.6
2,327,979	+		GFF2300	0.74	-1.2
2,327,979	-		GFF2300	0.74	-2.4
2,328,009	+		GFF2300	0.77	-0.7
2,328,034	+		GFF2300	0.79	-1.6
2,328,077	+		GFF2300	0.84	+1.2
2,328,082	+		GFF2300	0.84	-1.7
2,328,083	-		GFF2300	0.84	+0.5
2,328,104	+		GFF2300	0.86	-1.7
2,328,115	+		GFF2300	0.87	-0.4
2,328,115	+		GFF2300	0.87	-1.6
2,328,134	+		GFF2300	0.89	-0.6
2,328,154	+				-1.3
2,328,154	-				-1.6
2,328,156	-				-1.0
2,328,171	+				+0.3
2,328,171	+				-0.4
2,328,179	-				+0.7
2,328,179	-				+1.0
2,328,179	-				-0.3
2,328,181	+				-0.2
2,328,213	+				-1.3
2,328,213	+				-1.3
2,328,221	-				-0.4
2,328,221	-				+0.6
2,328,221	-				+0.1
2,328,221	-				+1.0
2,328,221	-				-0.7
2,328,248	-				+0.4
2,328,248	-				-1.0
2,328,253	+				-0.7
2,328,258	+				+0.2
2,328,266	-				+0.4
2,328,275	+				-0.7
2,328,280	+				-0.3
2,328,280	+				-1.9
2,328,298	+				+0.4
2,328,305	-				-1.2
2,328,318	+				-0.5
2,328,330	-				-0.3
2,328,339	+				-1.5
2,328,347	-				-0.8
2,328,349	-				-0.1
2,328,830	-				+1.0
2,328,869	+				-0.4
2,328,895	+				+0.8
2,328,938	+		GFF2302	0.21	-1.3
2,328,978	+		GFF2302	0.33	-0.5
2,328,978	+		GFF2302	0.33	+0.3
2,328,986	-		GFF2302	0.36	-0.0
2,328,986	-		GFF2302	0.36	-0.8
2,328,986	-		GFF2302	0.36	-0.1
2,328,986	-		GFF2302	0.36	-0.9
2,328,997	+		GFF2302	0.39	-2.2
2,328,997	+		GFF2302	0.39	-0.7
2,328,997	+		GFF2302	0.39	-1.4
2,328,997	+		GFF2302	0.39	-0.9
2,328,999	+		GFF2302	0.40	+0.1
2,329,005	-		GFF2302	0.42	-1.3
2,329,005	-		GFF2302	0.42	+0.6
2,329,005	-		GFF2302	0.42	-1.2
2,329,005	-		GFF2302	0.42	-2.2
2,329,005	-		GFF2302	0.42	-1.0
2,329,005	-		GFF2302	0.42	-1.2
2,329,005	-		GFF2302	0.42	+0.4
2,329,005	-		GFF2302	0.42	+0.1
2,329,005	-		GFF2302	0.42	-0.6
2,329,005	-		GFF2302	0.42	+0.6
2,329,005	-		GFF2302	0.42	+0.8
2,329,005	-		GFF2302	0.42	+0.4
2,329,005	-		GFF2302	0.42	+0.1
2,329,005	-		GFF2302	0.42	-0.9
2,329,005	-		GFF2302	0.42	+0.1
2,329,007	-		GFF2302	0.43	+0.4
2,329,011	+		GFF2302	0.44	-0.8
2,329,057	+		GFF2302	0.58	+0.6
2,329,113	-		GFF2302	0.76	-0.8
2,329,141	+		GFF2302	0.85	+0.7
2,329,141	+		GFF2302	0.85	+0.2
2,329,148	-		GFF2302	0.87	+0.6
2,329,148	-		GFF2302	0.87	-0.8
2,329,153	-		GFF2302	0.89	-0.6
2,329,165	+				+0.2
2,329,173	-				-0.3
2,329,173	-				-0.4
2,329,178	-				-1.6
2,329,183	-				+0.1
2,329,213	+				-1.2
2,329,215	-				+0.3
2,329,218	+				+0.4
2,329,221	+				+0.9
2,329,226	-				-0.8
2,329,228	-				-0.2
2,329,244	-				-1.1
2,329,247	+				-0.9
2,329,255	-				+1.0
2,329,255	-				+1.9
2,329,277	-				-0.3
2,329,296	-		GFF2303	0.12	+1.5
2,329,349	-		GFF2303	0.16	-0.2
2,329,368	-		GFF2303	0.18	-2.1
2,329,382	+		GFF2303	0.19	-0.7
2,329,384	+		GFF2303	0.19	-0.6
2,329,385	-		GFF2303	0.19	-1.1
2,329,417	+		GFF2303	0.22	-1.2
2,329,425	-		GFF2303	0.23	+0.2
2,329,430	-		GFF2303	0.23	+0.7
2,329,446	+		GFF2303	0.25	-0.7
2,329,452	+		GFF2303	0.25	+0.1
2,329,452	+		GFF2303	0.25	-0.0
2,329,500	+		GFF2303	0.29	-2.2
2,329,500	+		GFF2303	0.29	-1.8
2,329,500	+		GFF2303	0.29	-0.3
2,329,516	+		GFF2303	0.31	+1.0
2,329,540	-		GFF2303	0.33	+0.8
2,329,545	+		GFF2303	0.33	+0.4
2,329,545	+		GFF2303	0.33	+1.3
2,329,553	-		GFF2303	0.34	-0.4
2,329,553	-		GFF2303	0.34	-2.4
2,329,553	-		GFF2303	0.34	-0.8
2,329,553	-		GFF2303	0.34	-1.3
2,329,553	-		GFF2303	0.34	-2.3
2,329,553	-		GFF2303	0.34	-1.2
2,329,560	+		GFF2303	0.35	+1.2
2,329,563	-		GFF2303	0.35	-0.3
2,329,580	+		GFF2303	0.36	-0.9
2,329,580	+		GFF2303	0.36	-1.5
2,329,580	+		GFF2303	0.36	+0.4
2,329,583	-		GFF2303	0.37	+0.2
2,329,584	-		GFF2303	0.37	-1.1
2,329,585	+		GFF2303	0.37	-1.4
2,329,588	-		GFF2303	0.37	-0.8
2,329,590	+		GFF2303	0.37	+0.5
2,329,590	+		GFF2303	0.37	-2.5
2,329,590	+		GFF2303	0.37	-1.2
2,329,590	+		GFF2303	0.37	-0.6
2,329,598	-		GFF2303	0.38	-1.2
2,329,598	-		GFF2303	0.38	-0.4
2,329,605	+		GFF2303	0.38	-0.7
2,329,622	-		GFF2303	0.40	+0.2
2,329,626	-		GFF2303	0.40	+1.0
2,329,626	-		GFF2303	0.40	-1.2
2,329,654	-		GFF2303	0.43	+0.6
2,329,663	+		GFF2303	0.43	+0.4
2,329,671	-		GFF2303	0.44	-0.0
2,329,745	+		GFF2303	0.51	-0.2
2,329,753	-		GFF2303	0.51	-0.6
2,329,772	-		GFF2303	0.53	-0.6
2,329,784	-		GFF2303	0.54	-2.6
2,329,790	+		GFF2303	0.55	-0.4
2,329,793	-		GFF2303	0.55	-2.9
2,329,833	+		GFF2303	0.58	+0.5
2,329,834	-		GFF2303	0.58	+0.2