Strain Fitness in Sphingobium sp. HT1-2 around GFF2293

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,319,110	-		GFF2291	0.89	-2.2
2,319,124	-		GFF2291	0.90	-1.0
2,319,157	-				-0.1
2,319,167	+				+0.7
2,319,167	+				+1.0
2,319,167	+				-0.1
2,319,167	+				+0.3
2,319,175	-				+0.5
2,319,181	-				-1.7
2,319,191	+				-3.3
2,319,191	+				-0.3
2,319,191	+				+1.1
2,319,191	+				-0.5
2,319,191	+				+0.2
2,319,191	+				-0.2
2,319,197	+				+0.3
2,319,199	-				+0.3
2,319,199	-				-1.9
2,319,199	-				+0.4
2,319,218	-				+0.3
2,319,420	-				-0.3
2,319,420	-				-0.7
2,319,476	+		GFF2292	0.13	-1.8
2,319,485	+		GFF2292	0.15	-1.4
2,319,504	-		GFF2292	0.18	-1.4
2,319,509	+		GFF2292	0.18	-0.7
2,319,517	-		GFF2292	0.20	-1.0
2,319,519	+		GFF2292	0.20	+0.1
2,319,519	-		GFF2292	0.20	-0.1
2,319,527	-		GFF2292	0.21	+1.2
2,319,530	+		GFF2292	0.22	-1.7
2,319,576	+		GFF2292	0.29	-1.2
2,319,580	+		GFF2292	0.30	+0.5
2,319,580	+		GFF2292	0.30	-1.5
2,319,584	-		GFF2292	0.30	-2.9
2,319,596	+		GFF2292	0.32	-2.2
2,319,677	-		GFF2292	0.45	-1.4
2,319,685	+		GFF2292	0.46	-2.5
2,319,701	+		GFF2292	0.49	+0.0
2,319,711	-		GFF2292	0.50	-0.1
2,319,726	+		GFF2292	0.53	-0.0
2,319,728	+		GFF2292	0.53	+0.4
2,319,741	-		GFF2292	0.55	+1.5
2,319,743	-		GFF2292	0.55	+0.5
2,319,743	-		GFF2292	0.55	-1.2
2,319,765	+		GFF2292	0.59	+0.7
2,319,765	+		GFF2292	0.59	-0.4
2,319,770	+		GFF2292	0.60	-0.9
2,319,770	+		GFF2292	0.60	-0.5
2,319,770	+		GFF2292	0.60	-1.6
2,319,778	-		GFF2292	0.61	+0.1
2,319,793	+		GFF2292	0.63	-0.0
2,319,893	-		GFF2292	0.79	+0.7
2,319,916	-		GFF2292	0.83	-1.2
2,319,927	-		GFF2292	0.85	-0.8
2,319,949	+		GFF2292	0.88	-0.8
2,319,962	+				+0.2
2,319,966	+				-1.3
2,319,970	-				+0.0
2,319,970	-				-2.1
2,319,974	-				-0.6
2,319,976	+				-1.2
2,320,000	-				-0.3
2,320,018	+				-0.1
2,320,018	+				-1.5
2,320,026	-				+0.6
2,320,027	-				-0.4
2,320,029	+				-2.1
2,320,029	+				-0.7
2,320,032	-				+1.0
2,320,033	-				+0.4
2,320,039	-				+1.9
2,320,054	-				-1.3
2,320,079	+				+1.2
2,320,098	-				+0.2
2,320,174	-				-1.3
2,320,192	-		GFF2293	0.12	+0.5
2,320,231	+		GFF2293	0.17	-1.5
2,320,239	-		GFF2293	0.18	-1.4
2,320,265	-		GFF2293	0.22	-1.7
2,320,398	+		GFF2293	0.40	-2.6
2,320,429	-		GFF2293	0.44	-2.2
2,320,429	-		GFF2293	0.44	-0.9
2,320,429	-		GFF2293	0.44	-1.0
2,320,429	-		GFF2293	0.44	-0.9
2,320,458	+		GFF2293	0.48	-1.2
2,320,461	-		GFF2293	0.49	-2.3
2,320,488	-		GFF2293	0.52	-0.7
2,320,495	+		GFF2293	0.53	-1.6
2,320,503	-		GFF2293	0.54	-0.4
2,320,531	+		GFF2293	0.58	-1.5
2,320,531	+		GFF2293	0.58	+1.0
2,320,531	+		GFF2293	0.58	-1.2
2,320,539	-		GFF2293	0.59	-1.9
2,320,539	-		GFF2293	0.59	-2.3
2,320,539	-		GFF2293	0.59	+0.5
2,320,539	-		GFF2293	0.59	-0.7
2,320,539	-		GFF2293	0.59	-1.1
2,320,539	-		GFF2293	0.59	-1.9
2,320,539	-		GFF2293	0.59	+1.6
2,320,539	-		GFF2293	0.59	-0.6
2,320,539	-		GFF2293	0.59	-1.2
2,320,547	+		GFF2293	0.60	+0.8
2,320,566	-		GFF2293	0.63	-1.5
2,320,581	+		GFF2293	0.65	-1.2
2,320,581	+		GFF2293	0.65	-1.7
2,320,582	-		GFF2293	0.65	+0.8
2,320,589	-		GFF2293	0.66	-1.4
2,320,607	-		GFF2293	0.68	-1.2
2,320,653	-		GFF2293	0.75	-1.6
2,320,666	-		GFF2293	0.76	+1.6
2,320,754	+		GFF2293	0.88	-2.3
2,320,754	+		GFF2293	0.88	-1.3
2,320,762	-		GFF2293	0.90	-1.5
2,320,794	+				-1.2
2,320,802	-				-2.4
2,320,802	-				-1.6
2,320,802	-				-0.5
2,320,802	-				-1.5
2,320,817	-				-1.7
2,320,896	-				-0.6
2,320,912	-				-0.2
2,320,912	-				-0.3
2,320,977	-				-1.9
2,320,994	-				-1.2
2,321,006	-				+1.6
2,321,025	-				-0.4
2,321,035	-		GFF2294	0.11	+0.5
2,321,048	-		GFF2294	0.13	-0.0
2,321,073	+		GFF2294	0.17	+1.3
2,321,073	+		GFF2294	0.17	-1.3
2,321,073	+		GFF2294	0.17	-1.0
2,321,081	-		GFF2294	0.18	+0.1
2,321,081	-		GFF2294	0.18	+2.0
2,321,081	-		GFF2294	0.18	+0.1
2,321,081	-		GFF2294	0.18	-0.7
2,321,101	+		GFF2294	0.21	-0.1
2,321,130	+		GFF2294	0.25	-0.1
2,321,142	-		GFF2294	0.27	-0.8
2,321,180	+		GFF2294	0.32	-1.9
2,321,180	+		GFF2294	0.32	-1.2
2,321,188	-		GFF2294	0.34	-1.3
2,321,188	-		GFF2294	0.34	-0.6
2,321,202	+		GFF2294	0.36	-0.1
2,321,210	-		GFF2294	0.37	+1.3
2,321,213	-		GFF2294	0.37	+0.7
2,321,229	+		GFF2294	0.40	-0.7
2,321,233	-		GFF2294	0.40	-1.3
2,321,254	-		GFF2294	0.43	-0.3
2,321,260	-		GFF2294	0.44	+0.1
2,321,262	+		GFF2294	0.45	-0.8
2,321,262	+		GFF2294	0.45	-0.4
2,321,270	-		GFF2294	0.46	-0.0
2,321,276	-		GFF2294	0.47	-1.1
2,321,278	+		GFF2294	0.47	-1.3
2,321,278	+		GFF2294	0.47	-0.6
2,321,278	+		GFF2294	0.47	-0.5
2,321,278	+		GFF2294	0.47	+0.0
2,321,278	+		GFF2294	0.47	-1.2
2,321,283	+		GFF2294	0.48	-1.3
2,321,283	+		GFF2294	0.48	-0.5
2,321,283	+		GFF2294	0.48	+2.0
2,321,283	+		GFF2294	0.48	-2.2
2,321,283	+		GFF2294	0.48	-0.4
2,321,283	+		GFF2294	0.48	+0.2
2,321,283	+		GFF2294	0.48	-1.9
2,321,283	+		GFF2294	0.48	-0.2
2,321,283	+		GFF2294	0.48	+1.4
2,321,283	+		GFF2294	0.48	-0.5
2,321,283	+		GFF2294	0.48	+0.2
2,321,283	+		GFF2294	0.48	-1.1
2,321,283	+		GFF2294	0.48	-1.3
2,321,283	+		GFF2294	0.48	-0.4
2,321,283	+		GFF2294	0.48	-0.7
2,321,283	+		GFF2294	0.48	+1.0
2,321,283	+		GFF2294	0.48	-0.3
2,321,283	+		GFF2294	0.48	-1.2
2,321,286	-		GFF2294	0.48	-0.4
2,321,286	-		GFF2294	0.48	+0.2
2,321,286	-		GFF2294	0.48	-1.3
2,321,286	-		GFF2294	0.48	+1.7
2,321,291	-		GFF2294	0.49	-1.2
2,321,291	-		GFF2294	0.49	+0.1
2,321,291	-		GFF2294	0.49	+0.1
2,321,291	-		GFF2294	0.49	-0.1
2,321,291	-		GFF2294	0.49	-0.4
2,321,291	-		GFF2294	0.49	+0.3
2,321,291	-		GFF2294	0.49	-0.7
2,321,291	-		GFF2294	0.49	-0.0
2,321,291	-		GFF2294	0.49	-0.5
2,321,291	-		GFF2294	0.49	-1.6
2,321,291	-		GFF2294	0.49	-1.9
2,321,291	-		GFF2294	0.49	-0.9
2,321,291	-		GFF2294	0.49	+0.1
2,321,291	-		GFF2294	0.49	-1.2
2,321,291	-		GFF2294	0.49	+1.1
2,321,291	-		GFF2294	0.49	-1.7
2,321,291	-		GFF2294	0.49	-0.8
2,321,291	-		GFF2294	0.49	-0.3
2,321,296	-		GFF2294	0.50	-1.9
2,321,296	-		GFF2294	0.50	+0.6
2,321,300	+		GFF2294	0.50	+0.1
2,321,316	+		GFF2294	0.53	+1.1
2,321,316	+		GFF2294	0.53	-0.3
2,321,324	-		GFF2294	0.54	+0.6
2,321,335	+		GFF2294	0.56	-1.3
2,321,350	-		GFF2294	0.58	-1.5
2,321,411	-		GFF2294	0.67	+2.0
2,321,419	+		GFF2294	0.68	-1.6
2,321,429	+		GFF2294	0.69	-1.6
2,321,437	-		GFF2294	0.71	-0.5
2,321,439	+		GFF2294	0.71	+0.7
2,321,439	+		GFF2294	0.71	-1.2
2,321,445	-		GFF2294	0.72	+1.5
2,321,445	-		GFF2294	0.72	+0.2
2,321,446	+		GFF2294	0.72	-0.2
2,321,447	-		GFF2294	0.72	-0.9
2,321,458	-		GFF2294	0.74	+1.1
2,321,458	-		GFF2294	0.74	-1.9
2,321,469	+		GFF2294	0.75	+0.2
2,321,469	+		GFF2294	0.75	+1.6
2,321,469	+		GFF2294	0.75	-0.8
2,321,469	-		GFF2294	0.75	-0.4
2,321,492	-		GFF2294	0.79	-1.3
2,321,501	-		GFF2294	0.80	-1.8
2,321,511	-		GFF2294	0.82	-1.3
2,321,518	-		GFF2294	0.83	+1.2
2,321,521	-		GFF2294	0.83	+1.0
2,321,534	+		GFF2294	0.85	-0.7
2,321,541	+		GFF2294	0.86	-0.7
2,321,561	-		GFF2294	0.89	+0.1
2,321,564	-		GFF2294	0.90	-1.5
2,321,575	+				-1.0
2,321,575	+				+0.8
2,321,583	-				-0.4
2,321,583	-				-0.8
2,321,584	-				-0.3
2,321,584	-				+0.9
2,321,585	-				+0.2
2,321,586	+				-0.7
2,321,595	+				-0.9
2,321,597	+				-2.8
2,321,605	+				-0.3
2,321,628	+				-1.3
2,321,628	+				-0.2
2,321,640	+				-0.7
2,321,671	+		GFF2295	0.16	-1.3
2,321,672	+		GFF2295	0.16	-1.7
2,321,678	+		GFF2295	0.19	-0.9
2,321,678	+		GFF2295	0.19	-0.3
2,321,685	-		GFF2295	0.21	-1.6
2,321,696	-		GFF2295	0.26	-1.5
2,321,696	-		GFF2295	0.26	+0.2
2,321,699	+		GFF2295	0.27	-0.8
2,321,705	-		GFF2295	0.29	-0.9
2,321,707	-		GFF2295	0.30	+0.6
2,321,715	-		GFF2295	0.33	-2.6
2,321,735	+		GFF2295	0.41	-1.0
2,321,736	+		GFF2295	0.41	-0.1
2,321,738	+		GFF2295	0.42	-0.3
2,321,743	+		GFF2295	0.44	-1.7
2,321,755	-		GFF2295	0.48	+0.2
2,321,766	+		GFF2295	0.53	-0.4
2,321,801	-		GFF2295	0.66	+0.5