Strain Fitness in Sphingobium sp. HT1-2 around GFF2286

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,310,173	+		GFF2283	0.48	+0.3
2,310,178	+		GFF2283	0.48	-0.9
2,310,237	+		GFF2283	0.54	-1.1
2,310,268	-		GFF2283	0.57	-1.0
2,310,270	-		GFF2283	0.57	-0.8
2,310,289	-		GFF2283	0.59	+0.9
2,310,295	+		GFF2283	0.60	-0.3
2,310,304	+		GFF2283	0.61	+0.6
2,310,304	+		GFF2283	0.61	+0.4
2,310,312	-		GFF2283	0.61	+0.9
2,310,312	-		GFF2283	0.61	-0.2
2,310,332	+		GFF2283	0.63	+1.0
2,310,332	+		GFF2283	0.63	+0.4
2,310,333	+		GFF2283	0.63	-0.7
2,310,340	-		GFF2283	0.64	+0.1
2,310,352	+		GFF2283	0.65	+0.8
2,310,352	+		GFF2283	0.65	+0.2
2,310,360	-		GFF2283	0.66	+1.8
2,310,388	+		GFF2283	0.69	-1.3
2,310,388	+		GFF2283	0.69	-1.9
2,310,393	+		GFF2283	0.69	+1.8
2,310,393	+		GFF2283	0.69	-0.4
2,310,396	-		GFF2283	0.70	-0.6
2,310,400	+		GFF2283	0.70	-2.1
2,310,401	-		GFF2283	0.70	+0.3
2,310,401	-		GFF2283	0.70	-0.4
2,310,408	-		GFF2283	0.71	-0.3
2,310,423	-		GFF2283	0.72	-1.1
2,310,425	+		GFF2283	0.73	-1.6
2,310,431	+		GFF2283	0.73	-0.7
2,310,490	-		GFF2283	0.79	+0.3
2,310,517	+		GFF2283	0.82	-1.0
2,310,525	-		GFF2283	0.82	-0.8
2,310,539	+		GFF2283	0.84	-0.4
2,310,547	-		GFF2283	0.85	-2.1
2,310,573	+		GFF2283	0.87	-1.7
2,310,573	+		GFF2283	0.87	-0.4
2,310,573	+		GFF2283	0.87	-0.3
2,310,573	+		GFF2283	0.87	+0.3
2,310,573	+		GFF2283	0.87	+0.2
2,310,573	+		GFF2283	0.87	-1.7
2,310,573	+		GFF2283	0.87	-0.5
2,310,579	+		GFF2283	0.88	-1.7
2,310,581	-		GFF2283	0.88	+0.3
2,310,581	-		GFF2283	0.88	+0.6
2,310,605	-				+0.1
2,310,639	+				-0.6
2,310,647	-				-0.1
2,310,696	+				-0.5
2,310,696	+				-1.2
2,310,755	+				-0.0
2,310,788	-				-2.7
2,310,792	+				-1.4
2,310,792	+				+0.6
2,310,792	+				+0.4
2,310,792	+				+0.7
2,310,792	+				-1.4
2,310,792	+				+0.2
2,310,792	+				-1.0
2,310,807	-				-0.4
2,310,876	+		GFF2284	0.36	-0.8
2,310,876	-		GFF2284	0.36	+0.7
2,310,884	-		GFF2284	0.40	+0.4
2,310,913	-		GFF2284	0.55	-0.7
2,310,965	+		GFF2284	0.81	+0.4
2,310,988	+				+0.2
2,310,996	+				+1.1
2,311,044	+		GFF2285	0.30	-0.1
2,311,044	+		GFF2285	0.30	-0.8
2,311,044	+		GFF2285	0.30	+1.0
2,311,044	+		GFF2285	0.30	-0.9
2,311,046	-		GFF2285	0.31	-0.2
2,311,052	-		GFF2285	0.35	+1.0
2,311,052	-		GFF2285	0.35	+1.2
2,311,083	+		GFF2285	0.56	-0.3
2,311,083	+		GFF2285	0.56	+0.6
2,311,083	+		GFF2285	0.56	-0.2
2,311,083	+		GFF2285	0.56	+0.8
2,311,091	-		GFF2285	0.61	+0.4
2,311,091	-		GFF2285	0.61	+0.1
2,311,091	-		GFF2285	0.61	+2.1
2,311,091	-		GFF2285	0.61	-0.7
2,311,091	-		GFF2285	0.61	+0.8
2,311,091	-		GFF2285	0.61	-0.4
2,311,093	-		GFF2285	0.62	-0.1
2,311,117	+		GFF2285	0.78	-0.4
2,311,117	+		GFF2285	0.78	-0.8
2,311,125	-		GFF2285	0.83	-0.3
2,311,125	-		GFF2285	0.83	+0.1
2,311,127	+		GFF2285	0.84	+0.6
2,311,139	+				-0.5
2,311,179	+				+1.8
2,311,188	+				-1.3
2,311,188	+				-0.9
2,311,188	+				-0.7
2,311,306	+				+0.5
2,311,306	+				-1.1
2,311,306	+				-1.6
2,311,306	+				+0.7
2,311,314	-				-1.7
2,311,319	-				-1.8
2,311,364	-				-1.7
2,311,398	-		GFF2286	0.10	-2.7
2,311,449	-		GFF2286	0.13	+0.4
2,311,482	-		GFF2286	0.14	-0.3
2,311,600	-		GFF2286	0.19	-0.3
2,311,600	-		GFF2286	0.19	-1.9
2,311,600	-		GFF2286	0.19	+0.7
2,311,611	-		GFF2286	0.20	-1.7
2,311,664	+		GFF2286	0.22	-1.7
2,311,673	+		GFF2286	0.22	-0.7
2,311,673	+		GFF2286	0.22	-0.7
2,311,678	+		GFF2286	0.22	-1.3
2,311,680	+		GFF2286	0.22	+0.1
2,311,681	+		GFF2286	0.23	-1.2
2,311,681	-		GFF2286	0.23	-2.4
2,311,688	-		GFF2286	0.23	-0.5
2,311,704	-		GFF2286	0.24	-2.0
2,311,769	-		GFF2286	0.26	-2.0
2,311,774	+		GFF2286	0.27	-1.8
2,311,782	+		GFF2286	0.27	-0.5
2,311,807	-		GFF2286	0.28	-1.2
2,311,854	+		GFF2286	0.30	-1.0
2,311,998	+		GFF2286	0.36	-0.8
2,312,008	-		GFF2286	0.37	-0.2
2,312,044	-		GFF2286	0.38	-1.5
2,312,044	-		GFF2286	0.38	-0.7
2,312,094	-		GFF2286	0.40	-1.8
2,312,350	+		GFF2286	0.51	-3.0
2,312,358	+		GFF2286	0.52	-0.8
2,312,358	-		GFF2286	0.52	-0.8
2,312,400	+		GFF2286	0.53	+0.3
2,312,423	-		GFF2286	0.54	-1.5
2,312,443	+		GFF2286	0.55	+0.0
2,312,443	+		GFF2286	0.55	-2.4
2,312,443	+		GFF2286	0.55	-2.8
2,312,443	+		GFF2286	0.55	-1.1
2,312,443	+		GFF2286	0.55	+0.6
2,312,451	-		GFF2286	0.56	-0.7
2,312,453	+		GFF2286	0.56	-1.6
2,312,471	-		GFF2286	0.57	-0.5
2,312,489	+		GFF2286	0.57	-1.3
2,312,497	-		GFF2286	0.58	-0.4
2,312,497	-		GFF2286	0.58	-1.2
2,312,536	+		GFF2286	0.59	-0.4
2,312,591	-		GFF2286	0.62	-1.2
2,312,695	-		GFF2286	0.66	+0.5
2,312,709	+		GFF2286	0.67	-1.5
2,312,716	+		GFF2286	0.67	-3.3
2,312,716	+		GFF2286	0.67	-0.7
2,312,717	-		GFF2286	0.67	-1.7
2,312,724	-		GFF2286	0.67	+0.5
2,312,734	-		GFF2286	0.68	-0.7
2,312,759	+		GFF2286	0.69	+0.1
2,312,795	-		GFF2286	0.70	+0.3
2,312,811	-		GFF2286	0.71	-0.7
2,312,811	-		GFF2286	0.71	+0.5
2,312,854	+		GFF2286	0.73	-0.3
2,312,886	+		GFF2286	0.74	-1.2
2,312,887	+		GFF2286	0.74	-1.3
2,312,887	+		GFF2286	0.74	-0.3
2,312,897	+		GFF2286	0.75	-1.0
2,312,897	+		GFF2286	0.75	-1.8
2,312,897	+		GFF2286	0.75	-1.7
2,312,897	+		GFF2286	0.75	-1.5
2,312,905	-		GFF2286	0.75	-0.7
2,312,916	+		GFF2286	0.76	+0.7
2,312,948	+		GFF2286	0.77	-0.4
2,312,971	+		GFF2286	0.78	+0.0
2,312,989	-		GFF2286	0.79	-0.4
2,313,003	+		GFF2286	0.79	-0.1
2,313,046	+		GFF2286	0.81	-1.4
2,313,066	-		GFF2286	0.82	-1.2
2,313,210	+		GFF2286	0.88	-1.7
2,313,210	+		GFF2286	0.88	+0.7
2,313,210	+		GFF2286	0.88	-1.7
2,313,220	-		GFF2286	0.89	-1.0
2,313,269	+				-2.1
2,313,277	-				+0.5
2,313,277	-				-0.2
2,313,277	-				-0.4
2,313,280	-				-1.8
2,313,313	-				-1.1
2,313,369	+				-0.2
2,313,401	-				+0.4
2,313,664	+				-0.6
2,313,701	-		GFF2287	0.11	-0.3
2,313,713	+		GFF2287	0.13	+0.2
2,313,721	-		GFF2287	0.14	+1.3
2,313,721	-		GFF2287	0.14	+0.0
2,313,728	-		GFF2287	0.15	+1.3
2,313,753	-		GFF2287	0.19	+0.2
2,313,762	+		GFF2287	0.20	-0.1
2,313,762	+		GFF2287	0.20	+1.0
2,313,770	-		GFF2287	0.21	+0.6
2,313,780	-		GFF2287	0.23	-1.4
2,313,780	-		GFF2287	0.23	+0.8
2,313,846	+		GFF2287	0.32	+0.1
2,313,885	-		GFF2287	0.38	+1.1
2,313,937	-		GFF2287	0.46	-0.4
2,313,937	-		GFF2287	0.46	-0.9
2,313,944	-		GFF2287	0.47	+1.0
2,313,972	-		GFF2287	0.51	+1.3
2,313,980	-		GFF2287	0.52	+0.9
2,314,015	+		GFF2287	0.57	-0.8
2,314,020	-		GFF2287	0.58	+0.3
2,314,022	+		GFF2287	0.58	-1.0
2,314,030	-		GFF2287	0.59	-1.4
2,314,057	-		GFF2287	0.63	-0.8
2,314,057	-		GFF2287	0.63	+0.4
2,314,068	+		GFF2287	0.64	-0.3
2,314,068	+		GFF2287	0.64	-1.0
2,314,111	+		GFF2287	0.71	+0.5
2,314,162	+		GFF2287	0.78	-0.8
2,314,178	+		GFF2287	0.80	-1.8
2,314,210	-		GFF2287	0.85	+0.5
2,314,210	-		GFF2287	0.85	+1.0
2,314,214	+		GFF2287	0.86	-1.0
2,314,214	+		GFF2287	0.86	+0.8
2,314,214	+		GFF2287	0.86	-0.7
2,314,214	+		GFF2287	0.86	+0.9
2,314,214	+		GFF2287	0.86	+0.6
2,314,254	-				+0.7
2,314,262	-				+1.7
2,314,278	-				-1.1
2,314,283	+				-0.0
2,314,339	+				+0.7
2,314,342	+				-2.2
2,314,342	+				-0.5
2,314,349	+				-1.6
2,314,349	+				+0.2
2,314,349	+				-1.5
2,314,397	-		GFF2288	0.14	-0.1
2,314,397	-		GFF2288	0.14	-0.0
2,314,397	-		GFF2288	0.14	-0.0
2,314,436	+		GFF2288	0.20	+0.5
2,314,455	+		GFF2288	0.23	-0.8