Strain Fitness in Sphingobium sp. HT1-2 around GFF2276

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,302,172	+				-0.3
2,302,206	+				-0.6
2,302,211	+				-1.7
2,302,211	+				+0.9
2,302,211	+				+0.5
2,302,219	-		GFF2275	0.10	-1.3
2,302,219	-		GFF2275	0.10	-0.6
2,302,219	-		GFF2275	0.10	-2.7
2,302,219	-		GFF2275	0.10	-1.0
2,302,238	+		GFF2275	0.13	+1.3
2,302,238	+		GFF2275	0.13	-0.9
2,302,238	+		GFF2275	0.13	+0.1
2,302,246	-		GFF2275	0.14	+0.2
2,302,259	+		GFF2275	0.15	-1.0
2,302,264	+		GFF2275	0.16	-0.9
2,302,264	+		GFF2275	0.16	-1.1
2,302,269	+		GFF2275	0.17	-1.3
2,302,269	+		GFF2275	0.17	-1.4
2,302,269	+		GFF2275	0.17	-0.3
2,302,269	+		GFF2275	0.17	-0.4
2,302,274	+		GFF2275	0.17	-0.5
2,302,277	-		GFF2275	0.18	-0.1
2,302,277	-		GFF2275	0.18	-0.4
2,302,277	-		GFF2275	0.18	-1.7
2,302,277	-		GFF2275	0.18	+0.0
2,302,281	+		GFF2275	0.18	-0.6
2,302,298	-		GFF2275	0.20	-0.8
2,302,321	-		GFF2275	0.23	-0.6
2,302,321	-		GFF2275	0.23	+0.9
2,302,325	+		GFF2275	0.23	-0.8
2,302,328	-		GFF2275	0.24	+0.1
2,302,335	+		GFF2275	0.25	-0.8
2,302,343	-		GFF2275	0.26	-0.6
2,302,350	-		GFF2275	0.26	-0.2
2,302,377	+		GFF2275	0.30	-0.6
2,302,381	+		GFF2275	0.30	-0.1
2,302,409	+		GFF2275	0.34	-1.9
2,302,414	+		GFF2275	0.34	+0.3
2,302,430	+		GFF2275	0.36	+0.4
2,302,435	+		GFF2275	0.37	-1.8
2,302,474	+		GFF2275	0.42	-1.5
2,302,486	-		GFF2275	0.43	+1.5
2,302,486	-		GFF2275	0.43	-0.0
2,302,491	-		GFF2275	0.44	-1.1
2,302,500	+		GFF2275	0.45	-1.6
2,302,506	+		GFF2275	0.46	-1.8
2,302,507	+		GFF2275	0.46	+0.4
2,302,508	-		GFF2275	0.46	+0.2
2,302,525	-		GFF2275	0.48	-1.5
2,302,525	-		GFF2275	0.48	-0.5
2,302,545	+		GFF2275	0.50	-1.2
2,302,556	+		GFF2275	0.52	-0.8
2,302,561	+		GFF2275	0.52	-0.9
2,302,576	+		GFF2275	0.54	+0.7
2,302,579	-		GFF2275	0.55	-2.0
2,302,581	-		GFF2275	0.55	+0.3
2,302,615	+		GFF2275	0.59	+0.0
2,302,630	-		GFF2275	0.61	-0.4
2,302,632	+		GFF2275	0.61	-1.0
2,302,632	+		GFF2275	0.61	-1.4
2,302,632	+		GFF2275	0.61	-1.3
2,302,632	+		GFF2275	0.61	-1.0
2,302,633	-		GFF2275	0.61	+1.7
2,302,635	-		GFF2275	0.61	-0.3
2,302,640	-		GFF2275	0.62	-1.0
2,302,640	-		GFF2275	0.62	-2.0
2,302,668	+		GFF2275	0.65	-0.6
2,302,683	-		GFF2275	0.67	-1.9
2,302,683	-		GFF2275	0.67	+0.3
2,302,683	-		GFF2275	0.67	+0.9
2,302,693	-		GFF2275	0.69	-0.6
2,302,702	+		GFF2275	0.70	-0.5
2,302,702	+		GFF2275	0.70	-1.7
2,302,702	+		GFF2275	0.70	-0.3
2,302,702	+		GFF2275	0.70	-1.2
2,302,702	+		GFF2275	0.70	+0.7
2,302,710	-		GFF2275	0.71	+0.3
2,302,710	-		GFF2275	0.71	-0.8
2,302,710	-		GFF2275	0.71	-2.0
2,302,715	-		GFF2275	0.71	-0.2
2,302,755	+		GFF2275	0.76	-0.5
2,302,758	-		GFF2275	0.76	-0.5
2,302,765	+		GFF2275	0.77	+0.6
2,302,765	+		GFF2275	0.77	+0.6
2,302,765	+		GFF2275	0.77	-1.6
2,302,770	+		GFF2275	0.78	+0.5
2,302,770	+		GFF2275	0.78	+0.4
2,302,770	+		GFF2275	0.78	+0.4
2,302,773	-		GFF2275	0.78	+0.2
2,302,778	-		GFF2275	0.79	-0.7
2,302,778	-		GFF2275	0.79	-0.0
2,302,796	-		GFF2275	0.81	+0.7
2,302,796	-		GFF2275	0.81	-0.8
2,302,811	+		GFF2275	0.83	-0.8
2,302,811	+		GFF2275	0.83	-0.5
2,302,819	-		GFF2275	0.84	+0.8
2,302,845	+		GFF2275	0.87	-1.2
2,302,845	+		GFF2275	0.87	+0.4
2,302,857	+		GFF2275	0.89	-0.5
2,302,857	+		GFF2275	0.89	-2.2
2,302,867	+		GFF2275	0.90	+0.1
2,302,882	+				-1.7
2,302,929	+				-1.5
2,302,929	+				+0.1
2,302,929	+				-0.5
2,302,937	-				+0.2
2,302,942	-				+0.3
2,302,956	+				-0.2
2,302,960	-				-0.8
2,302,964	-				+0.8
2,302,964	-				-2.2
2,302,964	-				+0.1
2,303,027	-				-1.4
2,303,034	+				-1.4
2,303,034	+				-1.9
2,303,041	+				-0.4
2,303,054	-				-0.6
2,303,056	+				-1.4
2,303,056	+				-1.0
2,303,056	+				+0.1
2,303,056	+				+1.1
2,303,056	+				+0.3
2,304,042	-				-1.4
2,304,065	+				-0.0
2,304,073	-		GFF2277	0.12	-1.1
2,304,106	-		GFF2277	0.25	+0.6
2,304,118	+		GFF2277	0.30	-1.3
2,304,119	+		GFF2277	0.30	-0.4
2,304,128	-		GFF2277	0.34	+0.4
2,304,164	+		GFF2277	0.48	-0.6
2,304,164	+		GFF2277	0.48	-0.1
2,304,168	+		GFF2277	0.50	-0.4
2,304,169	+		GFF2277	0.50	-1.0
2,304,172	-		GFF2277	0.51	-0.3
2,304,172	-		GFF2277	0.51	-0.3
2,304,176	-		GFF2277	0.53	-2.3
2,304,176	-		GFF2277	0.53	-0.4
2,304,199	+		GFF2277	0.62	+1.5
2,304,206	+		GFF2277	0.65	-2.2
2,304,214	-		GFF2277	0.68	-1.3
2,304,222	+		GFF2277	0.71	+0.4
2,304,230	-		GFF2277	0.74	-0.8
2,304,246	+		GFF2277	0.81	-1.2
2,304,268	+		GFF2277	0.89	-1.0
2,304,295	-				+0.6
2,304,319	+				-0.6
2,304,327	-				+0.8
2,304,344	-				-1.7
2,304,349	-				-1.0
2,304,349	-				+0.4
2,304,357	+				-1.3
2,304,357	+				+1.1
2,304,357	+				+0.1
2,304,364	+				-2.0
2,304,372	-				-0.8
2,304,415	+				-1.2
2,304,415	+				+1.1
2,304,423	-				+0.3
2,304,423	-				+1.4
2,304,428	+				+0.2
2,304,429	-				+0.8
2,304,449	+				+0.4
2,304,449	-				-0.7
2,304,451	-				-0.7
2,304,451	-				-1.7
2,304,481	-		GFF2278	0.11	-1.3
2,304,486	-		GFF2278	0.12	+0.7
2,304,552	+		GFF2278	0.24	+1.0
2,304,587	+		GFF2278	0.31	+0.1
2,304,598	+		GFF2278	0.33	+0.6
2,304,598	+		GFF2278	0.33	-0.1
2,304,602	+		GFF2278	0.33	-0.4
2,304,610	-		GFF2278	0.35	+0.5
2,304,617	+		GFF2278	0.36	+0.5
2,304,622	+		GFF2278	0.37	-0.0
2,304,625	-		GFF2278	0.38	-0.7
2,304,625	-		GFF2278	0.38	-1.7
2,304,637	-		GFF2278	0.40	-0.2
2,304,642	-		GFF2278	0.41	-0.3
2,304,655	-		GFF2278	0.43	+2.0
2,304,673	+		GFF2278	0.47	+0.9
2,304,678	-		GFF2278	0.48	+0.3
2,304,680	+		GFF2278	0.48	-0.5
2,304,688	+		GFF2278	0.49	+0.5
2,304,688	+		GFF2278	0.49	-0.9
2,304,688	-		GFF2278	0.49	-2.0
2,304,688	-		GFF2278	0.49	-0.0
2,304,696	-		GFF2278	0.51	-1.1
2,304,747	+		GFF2278	0.60	+0.4
2,304,747	+		GFF2278	0.60	-1.5
2,304,747	+		GFF2278	0.60	+0.6
2,304,747	+		GFF2278	0.60	+0.0
2,304,747	+		GFF2278	0.60	-0.9
2,304,747	+		GFF2278	0.60	+0.7
2,304,755	-		GFF2278	0.62	+0.2
2,304,755	-		GFF2278	0.62	+0.2
2,304,755	-		GFF2278	0.62	-0.2
2,304,755	-		GFF2278	0.62	-0.3
2,304,755	-		GFF2278	0.62	-1.1
2,304,771	+		GFF2278	0.65	+0.3
2,304,773	-		GFF2278	0.65	+1.8
2,304,779	-		GFF2278	0.66	-0.2
2,304,779	-		GFF2278	0.66	-0.3
2,304,780	-		GFF2278	0.67	-1.2
2,304,780	-		GFF2278	0.67	+1.0
2,304,815	+		GFF2278	0.73	+0.4
2,304,815	+		GFF2278	0.73	+0.4
2,304,822	+		GFF2278	0.75	+0.1
2,304,822	+		GFF2278	0.75	-0.7
2,304,822	+		GFF2278	0.75	+0.4
2,304,822	+		GFF2278	0.75	-0.4
2,304,822	+		GFF2278	0.75	-1.4
2,304,823	-		GFF2278	0.75	-2.0
2,304,823	-		GFF2278	0.75	-2.5
2,304,823	-		GFF2278	0.75	+0.7
2,304,823	-		GFF2278	0.75	+1.4
2,304,823	-		GFF2278	0.75	+1.9
2,304,823	-		GFF2278	0.75	-2.0
2,304,825	+		GFF2278	0.75	-0.9
2,304,830	-		GFF2278	0.76	-1.1
2,304,850	-		GFF2278	0.80	-0.0
2,304,873	-		GFF2278	0.84	-2.2
2,304,884	+		GFF2278	0.86	+0.7
2,304,885	-		GFF2278	0.86	+0.3
2,304,886	+		GFF2278	0.87	-1.4
2,304,893	+		GFF2278	0.88	-0.5
2,304,893	-		GFF2278	0.88	-1.4
2,304,899	-		GFF2278	0.89	-0.5
2,304,903	-		GFF2278	0.90	+0.3
2,304,936	+				+0.2
2,304,968	+				-1.2
2,304,968	+				-2.0
2,304,986	-				-0.4
2,304,991	+				+0.5
2,304,991	+				-0.4
2,304,999	-				-1.1
2,305,013	+				+0.8
2,305,013	+				-1.3