Strain Fitness in Sphingobium sp. HT1-2 around GFF2272

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,299,103	-		GFF2270	0.48	-2.0
2,299,122	+		GFF2270	0.50	-0.8
2,299,133	+		GFF2270	0.51	-1.9
2,299,164	+		GFF2270	0.54	-2.1
2,299,164	+		GFF2270	0.54	-1.0
2,299,164	+		GFF2270	0.54	-1.8
2,299,164	+		GFF2270	0.54	-2.1
2,299,164	+		GFF2270	0.54	-1.3
2,299,169	+		GFF2270	0.55	-2.0
2,299,172	-		GFF2270	0.55	-2.1
2,299,172	-		GFF2270	0.55	-1.0
2,299,172	-		GFF2270	0.55	-0.3
2,299,172	-		GFF2270	0.55	-1.5
2,299,212	+		GFF2270	0.59	-1.2
2,299,212	+		GFF2270	0.59	-2.6
2,299,212	+		GFF2270	0.59	-1.3
2,299,217	+		GFF2270	0.60	-2.0
2,299,217	+		GFF2270	0.60	-1.8
2,299,217	+		GFF2270	0.60	-0.7
2,299,220	-		GFF2270	0.60	-0.8
2,299,222	+		GFF2270	0.60	-1.6
2,299,225	-		GFF2270	0.61	-1.2
2,299,301	+		GFF2270	0.69	-1.6
2,299,330	+		GFF2270	0.72	-2.2
2,299,338	-		GFF2270	0.72	-1.2
2,299,364	-		GFF2270	0.75	-2.0
2,299,377	+		GFF2270	0.77	-0.9
2,299,404	+		GFF2270	0.79	-3.0
2,299,414	+		GFF2270	0.81	-1.2
2,299,414	+		GFF2270	0.81	-2.0
2,299,414	+		GFF2270	0.81	-1.3
2,299,414	+		GFF2270	0.81	-1.3
2,299,414	+		GFF2270	0.81	-2.1
2,299,414	+		GFF2270	0.81	-2.9
2,299,422	-		GFF2270	0.81	-2.7
2,299,422	-		GFF2270	0.81	-3.1
2,299,422	-		GFF2270	0.81	-3.1
2,299,422	-		GFF2270	0.81	-2.2
2,299,422	-		GFF2270	0.81	-1.3
2,299,422	-		GFF2270	0.81	-1.5
2,299,456	+		GFF2270	0.85	-2.7
2,299,460	+		GFF2270	0.85	-3.5
2,299,460	+		GFF2270	0.85	-3.0
2,299,460	+		GFF2270	0.85	-1.2
2,299,464	-		GFF2270	0.86	-1.8
2,299,468	-		GFF2270	0.86	-1.0
2,299,480	-		GFF2270	0.88	-0.6
2,299,489	-		GFF2270	0.88	-2.4
2,299,516	+				-2.5
2,299,524	-				-1.9
2,299,546	+				-1.2
2,299,591	+				+0.0
2,299,599	-				-0.2
2,299,599	-				-1.0
2,299,610	-				-0.9
2,299,614	-				-1.4
2,299,644	+				-0.8
2,299,652	-				-1.3
2,299,652	-				+0.4
2,299,678	+				-2.0
2,299,687	-				-0.6
2,299,688	+				-2.6
2,299,692	+		GFF2271	0.11	+0.0
2,299,700	-		GFF2271	0.15	+0.2
2,299,761	+		GFF2271	0.44	+1.4
2,299,761	+		GFF2271	0.44	-1.1
2,299,769	-		GFF2271	0.48	+1.7
2,299,790	+		GFF2271	0.58	-0.4
2,299,832	+		GFF2271	0.78	-0.2
2,299,833	-		GFF2271	0.78	+0.4
2,299,835	-		GFF2271	0.79	-0.4
2,299,839	+		GFF2271	0.81	+1.1
2,299,848	-		GFF2271	0.85	-0.2
2,299,857	-		GFF2271	0.90	-1.0
2,299,863	+				-0.5
2,299,871	-				-1.0
2,299,871	-				+1.1
2,299,871	-				-0.0
2,299,871	-				+0.0
2,299,873	+				-0.4
2,299,900	+				+1.1
2,299,900	+				-0.3
2,299,900	+				-0.7
2,299,904	+				+0.2
2,299,908	-				+0.7
2,299,919	-				+0.4
2,299,919	-				-0.8
2,299,922	+				-0.8
2,299,953	+				+0.1
2,299,964	+				-0.7
2,299,982	+				-1.1
2,300,001	-				-1.9
2,300,028	+				+1.5
2,300,036	-				-0.0
2,300,036	-				+0.6
2,300,039	+				+1.1
2,300,044	+				+1.7
2,300,044	+				-0.8
2,300,044	+				+0.6
2,300,045	+				-2.0
2,300,047	-				+1.0
2,300,047	-				-1.4
2,300,052	-				-0.9
2,300,052	-				-1.8
2,300,055	+				+0.6
2,300,069	+				-0.1
2,300,069	+				+0.6
2,300,070	+				+0.3
2,300,077	-				-0.3
2,300,090	-				+1.1
2,300,092	-				+0.4
2,300,100	+				+0.5
2,300,102	-				+0.5
2,300,113	-				-0.6
2,300,161	-		GFF2272	0.34	+0.6
2,300,173	+		GFF2272	0.41	-0.5
2,300,181	+		GFF2272	0.46	-0.9
2,300,181	-		GFF2272	0.46	+0.6
2,300,190	-		GFF2272	0.51	-0.3
2,300,192	+		GFF2272	0.52	-0.0
2,300,192	+		GFF2272	0.52	-0.1
2,300,192	+		GFF2272	0.52	+0.6
2,300,192	+		GFF2272	0.52	-0.7
2,300,192	+		GFF2272	0.52	-1.2
2,300,194	-		GFF2272	0.53	-1.9
2,300,197	+		GFF2272	0.55	-1.3
2,300,200	-		GFF2272	0.57	+0.2
2,300,200	-		GFF2272	0.57	-0.5
2,300,200	-		GFF2272	0.57	-0.6
2,300,205	-		GFF2272	0.60	-1.9
2,300,205	-		GFF2272	0.60	+0.2
2,300,221	+		GFF2272	0.69	+1.0
2,300,223	-		GFF2272	0.70	-1.3
2,300,239	+		GFF2272	0.80	+1.6
2,300,247	-		GFF2272	0.84	-1.1
2,300,249	-		GFF2272	0.85	-2.7
2,300,306	+				+0.2
2,300,319	+				+0.2
2,300,332	-				+0.4
2,300,332	-				-0.4
2,300,356	+				+0.2
2,300,373	+				+0.4
2,300,373	+				+1.0
2,300,394	+				-0.5
2,300,399	+				+0.8
2,300,407	-				+0.3
2,300,409	+				-1.5
2,300,409	+				+0.5
2,300,409	+				+1.3
2,300,409	+				-0.8
2,300,417	-				-0.3
2,300,417	-				-2.1
2,300,417	-				-0.3
2,300,417	-				-0.5
2,300,419	+				+0.3
2,300,435	+				+1.6
2,300,443	-				-0.9
2,300,462	+				-1.4
2,300,470	-		GFF2273	0.10	-1.2
2,300,494	+		GFF2273	0.12	+1.7
2,300,550	+		GFF2273	0.16	+0.2
2,300,551	+		GFF2273	0.16	+1.2
2,300,551	+		GFF2273	0.16	-0.6
2,300,560	+		GFF2273	0.17	+0.2
2,300,575	-		GFF2273	0.18	+0.1
2,300,578	+		GFF2273	0.18	-1.2
2,300,578	+		GFF2273	0.18	+0.3
2,300,586	-		GFF2273	0.19	-0.7
2,300,586	-		GFF2273	0.19	-0.3
2,300,586	-		GFF2273	0.19	+0.7
2,300,586	-		GFF2273	0.19	-1.4
2,300,586	-		GFF2273	0.19	-0.0
2,300,599	+		GFF2273	0.20	+0.4
2,300,632	+		GFF2273	0.22	-2.5
2,300,638	-		GFF2273	0.23	-0.8
2,300,647	-		GFF2273	0.23	-0.2
2,300,661	+		GFF2273	0.25	-1.6
2,300,726	-		GFF2273	0.29	-0.7
2,300,728	+		GFF2273	0.30	+0.1
2,300,753	-		GFF2273	0.31	+1.8
2,300,753	-		GFF2273	0.31	-0.0
2,300,763	+		GFF2273	0.32	-0.3
2,300,769	+		GFF2273	0.33	-0.5
2,300,775	+		GFF2273	0.33	-1.3
2,300,783	-		GFF2273	0.34	+0.4
2,300,785	+		GFF2273	0.34	-0.7
2,300,791	-		GFF2273	0.34	-1.5
2,300,793	-		GFF2273	0.34	+0.7
2,300,795	-		GFF2273	0.35	-2.4
2,300,802	+		GFF2273	0.35	-0.3
2,300,802	+		GFF2273	0.35	-0.4
2,300,809	+		GFF2273	0.36	+0.8
2,300,809	+		GFF2273	0.36	-0.2
2,300,810	-		GFF2273	0.36	-1.0
2,300,810	-		GFF2273	0.36	+0.6
2,300,810	-		GFF2273	0.36	+0.4
2,300,817	-		GFF2273	0.36	+1.4
2,300,837	+		GFF2273	0.38	-0.4
2,300,853	+		GFF2273	0.39	+0.9
2,300,876	+		GFF2273	0.41	-0.4
2,300,901	-		GFF2273	0.43	+0.1
2,300,938	-		GFF2273	0.45	-0.1
2,300,954	+		GFF2273	0.47	-1.9
2,300,955	-		GFF2273	0.47	+1.7
2,300,960	+		GFF2273	0.47	-0.8
2,300,966	+		GFF2273	0.47	-0.0
2,300,974	-		GFF2273	0.48	-1.6
2,300,980	-		GFF2273	0.49	+0.2
2,300,986	+		GFF2273	0.49	-0.5
2,300,991	+		GFF2273	0.49	-1.2
2,300,991	+		GFF2273	0.49	+0.2
2,300,991	+		GFF2273	0.49	+1.5
2,300,999	-		GFF2273	0.50	+0.0
2,300,999	-		GFF2273	0.50	-0.7
2,300,999	-		GFF2273	0.50	+1.0
2,300,999	-		GFF2273	0.50	-1.5
2,301,015	+		GFF2273	0.51	-0.2
2,301,066	+		GFF2273	0.55	-1.3
2,301,072	+		GFF2273	0.55	+1.2
2,301,080	-		GFF2273	0.56	+0.6
2,301,107	+		GFF2273	0.58	+0.0
2,301,117	+		GFF2273	0.59	+1.3
2,301,125	-		GFF2273	0.59	-1.4
2,301,125	-		GFF2273	0.59	+0.6
2,301,150	-		GFF2273	0.61	-0.8
2,301,159	+		GFF2273	0.62	+1.6
2,301,167	-		GFF2273	0.63	-2.3
2,301,170	-		GFF2273	0.63	-1.4
2,301,204	+		GFF2273	0.65	-0.0
2,301,213	-		GFF2273	0.66	-2.3
2,301,214	+		GFF2273	0.66	+0.8
2,301,272	+		GFF2273	0.71	-0.5
2,301,272	+		GFF2273	0.71	+1.3