Strain Fitness in Sphingobium sp. HT1-2 around GFF227

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF226 and GFF227 are separated by 44 nucleotidesGFF227 and GFF228 are separated by 18 nucleotides GFF226 - hypothetical protein, at 230,117 to 232,030 GFF226 GFF227 - hypothetical protein, at 232,075 to 232,491 GFF227 GFF228 - Transcriptional regulator, AraC family, at 232,510 to 233,406 GFF228 Position (kb) 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1at 231.943 kb on - strandat 232.038 kb on + strandat 232.038 kb on + strandat 232.038 kb on + strandat 232.038 kb on + strandat 232.046 kb on - strandat 232.048 kb on + strandat 232.056 kb on - strandat 232.063 kb on - strandat 232.068 kb on - strandat 232.071 kb on - strandat 232.092 kb on + strandat 232.095 kb on + strandat 232.111 kb on + strandat 232.111 kb on + strandat 232.113 kb on - strandat 232.116 kb on + strandat 232.492 kb on + strandat 232.492 kb on + strandat 232.492 kb on + strandat 232.500 kb on - strandat 232.500 kb on - strandat 232.500 kb on - strandat 232.528 kb on + strandat 232.528 kb on + strandat 232.536 kb on - strandat 232.561 kb on - strandat 232.566 kb on - strandat 232.571 kb on + strandat 232.589 kb on - strandat 232.600 kb on + strand, within GFF228at 232.600 kb on + strand, within GFF228at 232.605 kb on - strand, within GFF228at 232.608 kb on - strand, within GFF228at 232.608 kb on - strand, within GFF228at 232.610 kb on + strand, within GFF228at 232.615 kb on + strand, within GFF228at 232.615 kb on + strand, within GFF228at 232.622 kb on - strand, within GFF228at 232.623 kb on - strand, within GFF228at 232.623 kb on - strand, within GFF228at 232.667 kb on - strand, within GFF228at 232.667 kb on - strand, within GFF228at 232.688 kb on + strand, within GFF228at 232.720 kb on + strand, within GFF228at 232.723 kb on - strand, within GFF228at 232.780 kb on + strand, within GFF228at 232.785 kb on + strand, within GFF228at 232.785 kb on + strand, within GFF228at 232.793 kb on + strand, within GFF228at 232.793 kb on - strand, within GFF228at 232.793 kb on - strand, within GFF228at 232.801 kb on - strand, within GFF228at 232.803 kb on + strand, within GFF228at 232.811 kb on - strand, within GFF228at 232.817 kb on + strand, within GFF228at 232.831 kb on - strand, within GFF228at 232.853 kb on + strand, within GFF228at 232.861 kb on - strand, within GFF228at 232.902 kb on - strand, within GFF228at 232.940 kb on + strand, within GFF228at 232.950 kb on + strand, within GFF228at 232.955 kb on + strand, within GFF228at 232.958 kb on + strand, within GFF228at 232.958 kb on + strand, within GFF228at 232.958 kb on + strand, within GFF228at 232.958 kb on + strand, within GFF228at 232.958 kb on - strand, within GFF228at 232.958 kb on - strand, within GFF228at 232.960 kb on + strand, within GFF228at 232.963 kb on - strand, within GFF228at 232.963 kb on - strand, within GFF228at 232.969 kb on + strand, within GFF228at 232.969 kb on + strand, within GFF228at 232.977 kb on + strand, within GFF228at 232.984 kb on - strand, within GFF228at 232.997 kb on + strand, within GFF228at 232.999 kb on + strand, within GFF228at 233.007 kb on + strand, within GFF228at 233.007 kb on - strand, within GFF228at 233.007 kb on - strand, within GFF228at 233.015 kb on - strand, within GFF228at 233.015 kb on - strand, within GFF228at 233.018 kb on + strand, within GFF228at 233.022 kb on + strand, within GFF228at 233.022 kb on + strand, within GFF228at 233.022 kb on + strand, within GFF228at 233.026 kb on + strand, within GFF228at 233.026 kb on + strand, within GFF228at 233.030 kb on - strand, within GFF228at 233.030 kb on - strand, within GFF228at 233.034 kb on - strand, within GFF228at 233.034 kb on - strand, within GFF228at 233.044 kb on + strand, within GFF228at 233.044 kb on + strand, within GFF228at 233.044 kb on + strand, within GFF228at 233.045 kb on + strand, within GFF228at 233.069 kb on + strand, within GFF228at 233.077 kb on - strand, within GFF228at 233.092 kb on - strand, within GFF228at 233.094 kb on + strand, within GFF228at 233.103 kb on + strand, within GFF228at 233.103 kb on + strand, within GFF228at 233.103 kb on + strand, within GFF228at 233.111 kb on - strand, within GFF228at 233.112 kb on - strand, within GFF228at 233.127 kb on + strand, within GFF228at 233.127 kb on + strand, within GFF228at 233.127 kb on + strand, within GFF228at 233.127 kb on + strand, within GFF228at 233.127 kb on + strand, within GFF228at 233.129 kb on - strand, within GFF228at 233.133 kb on - strand, within GFF228at 233.133 kb on - strand, within GFF228at 233.135 kb on - strand, within GFF228at 233.135 kb on - strand, within GFF228at 233.135 kb on - strand, within GFF228at 233.145 kb on - strand, within GFF228at 233.145 kb on - strand, within GFF228at 233.145 kb on - strand, within GFF228at 233.145 kb on - strand, within GFF228at 233.147 kb on - strand, within GFF228at 233.183 kb on - strand, within GFF228at 233.206 kb on + strand, within GFF228at 233.206 kb on + strand, within GFF228at 233.212 kb on + strand, within GFF228at 233.212 kb on + strand, within GFF228at 233.212 kb on + strand, within GFF228at 233.212 kb on + strand, within GFF228at 233.212 kb on + strand, within GFF228at 233.212 kb on + strand, within GFF228at 233.212 kb on + strand, within GFF228at 233.213 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.220 kb on - strand, within GFF228at 233.239 kb on - strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.241 kb on + strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.249 kb on - strand, within GFF228at 233.258 kb on + strand, within GFF228at 233.258 kb on + strand, within GFF228at 233.266 kb on - strand, within GFF228at 233.266 kb on - strand, within GFF228at 233.268 kb on - strand, within GFF228at 233.276 kb on - strand, within GFF228at 233.284 kb on + strand, within GFF228at 233.292 kb on - strand, within GFF228at 233.304 kb on + strand, within GFF228at 233.312 kb on - strand, within GFF228at 233.317 kb on - strandat 233.321 kb on + strandat 233.323 kb on + strandat 233.327 kb on - strandat 233.334 kb on + strandat 233.336 kb on - strandat 233.342 kb on - strandat 233.342 kb on - strandat 233.342 kb on - strandat 233.351 kb on + strandat 233.363 kb on + strandat 233.375 kb on - strandat 233.394 kb on + strandat 233.402 kb on - strandat 233.408 kb on - strandat 233.420 kb on - strandat 233.452 kb on - strandat 233.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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231,943 - -1.0
232,038 + +1.1
232,038 + +0.3
232,038 + -0.2
232,038 + -0.9
232,046 - -1.1
232,048 + -0.1
232,056 - +0.5
232,063 - -0.2
232,068 - -0.6
232,071 - +0.0
232,092 + -0.3
232,095 + -1.4
232,111 + -0.4
232,111 + +0.2
232,113 - -0.7
232,116 + -0.4
232,492 + +0.8
232,492 + +0.4
232,492 + -2.1
232,500 - -1.9
232,500 - -0.1
232,500 - -0.2
232,528 + -0.3
232,528 + +1.2
232,536 - -1.2
232,561 - -0.5
232,566 - +0.2
232,571 + -1.6
232,589 - +0.5
232,600 + GFF228 0.10 -0.8
232,600 + GFF228 0.10 -1.1
232,605 - GFF228 0.11 -1.0
232,608 - GFF228 0.11 -0.5
232,608 - GFF228 0.11 -1.3
232,610 + GFF228 0.11 +0.4
232,615 + GFF228 0.12 +0.9
232,615 + GFF228 0.12 +0.6
232,622 - GFF228 0.12 +1.0
232,623 - GFF228 0.13 +0.5
232,623 - GFF228 0.13 +0.5
232,667 - GFF228 0.18 -0.3
232,667 - GFF228 0.18 +1.0
232,688 + GFF228 0.20 -0.3
232,720 + GFF228 0.23 +0.8
232,723 - GFF228 0.24 -0.7
232,780 + GFF228 0.30 -0.5
232,785 + GFF228 0.31 -0.5
232,785 + GFF228 0.31 -1.7
232,793 + GFF228 0.32 -0.2
232,793 - GFF228 0.32 -0.6
232,793 - GFF228 0.32 +0.5
232,801 - GFF228 0.32 -0.0
232,803 + GFF228 0.33 -0.5
232,811 - GFF228 0.34 -2.6
232,817 + GFF228 0.34 +0.1
232,831 - GFF228 0.36 +1.1
232,853 + GFF228 0.38 +1.0
232,861 - GFF228 0.39 -1.6
232,902 - GFF228 0.44 -0.8
232,940 + GFF228 0.48 -1.1
232,950 + GFF228 0.49 +0.7
232,955 + GFF228 0.50 -0.4
232,958 + GFF228 0.50 -0.3
232,958 + GFF228 0.50 +1.4
232,958 + GFF228 0.50 -1.6
232,958 + GFF228 0.50 -0.9
232,958 - GFF228 0.50 -0.6
232,958 - GFF228 0.50 +0.0
232,960 + GFF228 0.50 +0.1
232,963 - GFF228 0.51 +0.5
232,963 - GFF228 0.51 -0.7
232,969 + GFF228 0.51 -1.1
232,969 + GFF228 0.51 -3.0
232,977 + GFF228 0.52 -0.2
232,984 - GFF228 0.53 +0.1
232,997 + GFF228 0.54 +0.2
232,999 + GFF228 0.55 -2.0
233,007 + GFF228 0.55 -1.5
233,007 - GFF228 0.55 -0.1
233,007 - GFF228 0.55 -0.3
233,015 - GFF228 0.56 -0.1
233,015 - GFF228 0.56 -0.2
233,018 + GFF228 0.57 -1.2
233,022 + GFF228 0.57 -0.4
233,022 + GFF228 0.57 -0.0
233,022 + GFF228 0.57 -2.5
233,026 + GFF228 0.58 -0.6
233,026 + GFF228 0.58 +1.0
233,030 - GFF228 0.58 -1.0
233,030 - GFF228 0.58 +0.6
233,034 - GFF228 0.58 +0.1
233,034 - GFF228 0.58 -1.0
233,044 + GFF228 0.60 -1.1
233,044 + GFF228 0.60 +0.2
233,044 + GFF228 0.60 -0.2
233,045 + GFF228 0.60 -0.1
233,069 + GFF228 0.62 -0.1
233,077 - GFF228 0.63 -0.5
233,092 - GFF228 0.65 +0.6
233,094 + GFF228 0.65 -0.8
233,103 + GFF228 0.66 +0.7
233,103 + GFF228 0.66 -1.2
233,103 + GFF228 0.66 +0.6
233,111 - GFF228 0.67 -0.2
233,112 - GFF228 0.67 +1.0
233,127 + GFF228 0.69 +0.9
233,127 + GFF228 0.69 -0.8
233,127 + GFF228 0.69 -2.2
233,127 + GFF228 0.69 +0.2
233,127 + GFF228 0.69 +0.2
233,129 - GFF228 0.69 +0.1
233,133 - GFF228 0.69 -1.1
233,133 - GFF228 0.69 -1.2
233,135 - GFF228 0.70 +0.6
233,135 - GFF228 0.70 -0.8
233,135 - GFF228 0.70 -1.2
233,145 - GFF228 0.71 +1.7
233,145 - GFF228 0.71 -0.0
233,145 - GFF228 0.71 +0.4
233,145 - GFF228 0.71 -0.5
233,147 - GFF228 0.71 +0.1
233,183 - GFF228 0.75 -1.2
233,206 + GFF228 0.78 -0.2
233,206 + GFF228 0.78 -1.2
233,212 + GFF228 0.78 +1.6
233,212 + GFF228 0.78 +0.2
233,212 + GFF228 0.78 -1.1
233,212 + GFF228 0.78 -1.2
233,212 + GFF228 0.78 +0.1
233,212 + GFF228 0.78 -1.1
233,212 + GFF228 0.78 -0.3
233,213 - GFF228 0.78 -0.6
233,220 - GFF228 0.79 +1.1
233,220 - GFF228 0.79 -1.4
233,220 - GFF228 0.79 +0.4
233,220 - GFF228 0.79 -1.5
233,220 - GFF228 0.79 -1.1
233,220 - GFF228 0.79 +0.8
233,220 - GFF228 0.79 -0.6
233,220 - GFF228 0.79 -2.7
233,220 - GFF228 0.79 +0.9
233,239 - GFF228 0.81 +0.1
233,241 + GFF228 0.81 +0.9
233,241 + GFF228 0.81 +1.2
233,241 + GFF228 0.81 -2.3
233,241 + GFF228 0.81 +0.4
233,241 + GFF228 0.81 -0.5
233,241 + GFF228 0.81 +1.5
233,241 + GFF228 0.81 +0.0
233,241 + GFF228 0.81 +0.5
233,241 + GFF228 0.81 +0.7
233,241 + GFF228 0.81 -0.8
233,241 + GFF228 0.81 +0.7
233,249 - GFF228 0.82 +0.9
233,249 - GFF228 0.82 +1.2
233,249 - GFF228 0.82 -0.5
233,249 - GFF228 0.82 -2.6
233,249 - GFF228 0.82 -2.1
233,249 - GFF228 0.82 +0.3
233,249 - GFF228 0.82 -0.0
233,249 - GFF228 0.82 -1.3
233,249 - GFF228 0.82 -0.2
233,249 - GFF228 0.82 -1.1
233,249 - GFF228 0.82 +0.1
233,258 + GFF228 0.83 +0.4
233,258 + GFF228 0.83 -0.2
233,266 - GFF228 0.84 -2.1
233,266 - GFF228 0.84 -0.6
233,268 - GFF228 0.85 +0.5
233,276 - GFF228 0.85 -1.5
233,284 + GFF228 0.86 -1.3
233,292 - GFF228 0.87 -1.3
233,304 + GFF228 0.89 +0.7
233,312 - GFF228 0.89 -0.2
233,317 - +0.7
233,321 + +0.2
233,323 + -1.2
233,327 - -1.8
233,334 + -0.5
233,336 - +0.0
233,342 - -0.9
233,342 - +0.1
233,342 - +0.2
233,351 + -1.1
233,363 + -0.3
233,375 - -1.3
233,394 + -0.9
233,402 - -1.2
233,408 - -1.2
233,420 - +0.4
233,452 - +1.3
233,454 - +1.0

Or see this region's nucleotide sequence