Strain Fitness in Sphingobium sp. HT1-2 around GFF2264

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,292,326	+		GFF2263	0.68	+0.3
2,292,334	-		GFF2263	0.68	+0.1
2,292,351	-		GFF2263	0.69	+0.6
2,292,353	+		GFF2263	0.69	-1.2
2,292,361	-		GFF2263	0.69	+1.3
2,292,361	-		GFF2263	0.69	-0.3
2,292,371	-		GFF2263	0.70	+0.9
2,292,384	-		GFF2263	0.70	-0.8
2,292,485	+		GFF2263	0.74	-0.9
2,292,490	+		GFF2263	0.74	-0.1
2,292,490	+		GFF2263	0.74	-0.4
2,292,490	+		GFF2263	0.74	-0.3
2,292,490	+		GFF2263	0.74	+0.1
2,292,490	+		GFF2263	0.74	+0.1
2,292,490	+		GFF2263	0.74	+0.3
2,292,490	+		GFF2263	0.74	-0.6
2,292,490	+		GFF2263	0.74	-0.6
2,292,490	+		GFF2263	0.74	+0.7
2,292,493	-		GFF2263	0.74	-1.4
2,292,493	-		GFF2263	0.74	+1.0
2,292,498	-		GFF2263	0.74	-2.3
2,292,498	-		GFF2263	0.74	+0.1
2,292,498	-		GFF2263	0.74	-0.2
2,292,498	-		GFF2263	0.74	-0.5
2,292,498	-		GFF2263	0.74	+0.1
2,292,498	-		GFF2263	0.74	-1.7
2,292,498	-		GFF2263	0.74	-1.3
2,292,498	-		GFF2263	0.74	-0.1
2,292,509	+		GFF2263	0.75	-0.9
2,292,511	+		GFF2263	0.75	-0.1
2,292,517	-		GFF2263	0.75	-0.9
2,292,519	-		GFF2263	0.75	-0.4
2,292,523	-		GFF2263	0.75	-1.7
2,292,523	-		GFF2263	0.75	+1.0
2,292,536	+		GFF2263	0.76	-0.1
2,292,536	+		GFF2263	0.76	+1.2
2,292,544	-		GFF2263	0.76	-1.7
2,292,544	-		GFF2263	0.76	+1.0
2,292,555	+		GFF2263	0.76	-1.8
2,292,555	+		GFF2263	0.76	+1.7
2,292,555	+		GFF2263	0.76	-0.3
2,292,555	+		GFF2263	0.76	+0.5
2,292,563	-		GFF2263	0.77	-1.3
2,292,563	-		GFF2263	0.77	-0.4
2,292,563	-		GFF2263	0.77	-0.0
2,292,563	-		GFF2263	0.77	-0.9
2,292,563	-		GFF2263	0.77	-1.1
2,292,622	-		GFF2263	0.79	-1.5
2,292,657	+		GFF2263	0.80	-0.6
2,292,660	-		GFF2263	0.80	+0.9
2,292,670	-		GFF2263	0.80	-0.3
2,292,705	+		GFF2263	0.82	-0.0
2,292,708	+		GFF2263	0.82	-1.7
2,292,721	+		GFF2263	0.82	+0.0
2,292,721	-		GFF2263	0.82	-0.8
2,292,728	-		GFF2263	0.82	-0.5
2,292,728	-		GFF2263	0.82	-0.1
2,292,730	+		GFF2263	0.82	-0.9
2,292,738	-		GFF2263	0.83	-1.2
2,292,738	-		GFF2263	0.83	-0.7
2,292,746	+		GFF2263	0.83	-0.3
2,292,755	+		GFF2263	0.83	-0.6
2,292,755	+		GFF2263	0.83	+0.4
2,292,755	+		GFF2263	0.83	+0.1
2,292,763	-		GFF2263	0.84	-0.7
2,292,769	+		GFF2263	0.84	+0.3
2,292,792	+		GFF2263	0.85	+0.1
2,292,792	+		GFF2263	0.85	-0.4
2,292,805	+		GFF2263	0.85	+0.4
2,292,821	+		GFF2263	0.86	+0.0
2,292,821	+		GFF2263	0.86	-1.8
2,292,826	+		GFF2263	0.86	-1.5
2,292,836	-		GFF2263	0.86	-0.1
2,292,842	-		GFF2263	0.86	-0.1
2,292,853	+		GFF2263	0.87	-1.1
2,292,853	+		GFF2263	0.87	-0.7
2,292,861	-		GFF2263	0.87	-1.6
2,292,879	-		GFF2263	0.88	+1.1
2,292,885	-		GFF2263	0.88	-0.1
2,292,892	+		GFF2263	0.88	+0.9
2,292,892	+		GFF2263	0.88	-0.2
2,292,908	-		GFF2263	0.89	-1.0
2,292,910	+		GFF2263	0.89	+0.3
2,292,913	-		GFF2263	0.89	-2.1
2,293,033	-				+0.6
2,293,046	+				+1.6
2,293,053	-				+0.7
2,293,054	-				-2.6
2,293,059	-				+0.1
2,293,059	-				-1.3
2,293,071	+				-1.3
2,293,098	-				-0.4
2,293,136	+				-0.7
2,293,142	+				-2.5
2,293,142	+				-0.1
2,293,144	-				-0.2
2,293,150	-				-1.3
2,293,167	-				-0.4
2,293,176	+				+1.1
2,293,181	-				-1.8
2,293,191	+				+0.4
2,293,208	-				-1.4
2,293,210	+				-1.0
2,293,218	-				-0.5
2,293,219	+				-0.9
2,293,222	-				-0.1
2,293,229	+				+1.0
2,293,252	+				+0.5
2,293,267	+				-1.2
2,293,269	-				-0.7
2,293,275	-				-0.3
2,293,281	-				-0.6
2,293,293	+				-1.5
2,293,331	+				-0.5
2,293,372	-				-0.2
2,293,373	+				+0.2
2,293,405	+				-0.9
2,293,416	+				+0.9
2,293,416	+				-1.9
2,293,419	-				-1.9
2,293,419	-				-0.5
2,293,449	-				+0.8
2,293,451	-				+0.1
2,293,460	+		GFF2264	0.10	+0.2
2,293,484	+		GFF2264	0.12	-0.7
2,293,484	+		GFF2264	0.12	-2.1
2,293,484	+		GFF2264	0.12	+0.2
2,293,484	+		GFF2264	0.12	-1.3
2,293,484	+		GFF2264	0.12	-1.1
2,293,492	-		GFF2264	0.12	+0.5
2,293,492	-		GFF2264	0.12	+0.7
2,293,493	-		GFF2264	0.13	+0.4
2,293,493	-		GFF2264	0.13	-1.8
2,293,498	-		GFF2264	0.13	-1.5
2,293,500	-		GFF2264	0.13	+0.5
2,293,544	+		GFF2264	0.16	-0.5
2,293,552	-		GFF2264	0.17	-0.0
2,293,594	+		GFF2264	0.20	-0.3
2,293,599	+		GFF2264	0.20	-1.3
2,293,607	-		GFF2264	0.21	-0.5
2,293,607	-		GFF2264	0.21	+0.1
2,293,607	-		GFF2264	0.21	+0.2
2,293,607	-		GFF2264	0.21	-1.0
2,293,607	-		GFF2264	0.21	-1.2
2,293,626	+		GFF2264	0.22	-0.5
2,293,633	-		GFF2264	0.23	+0.2
2,293,639	+		GFF2264	0.23	+0.7
2,293,647	+		GFF2264	0.24	+0.3
2,293,651	+		GFF2264	0.24	-0.3
2,293,651	+		GFF2264	0.24	-0.1
2,293,659	-		GFF2264	0.25	+0.4
2,293,659	-		GFF2264	0.25	-1.3
2,293,664	+		GFF2264	0.25	-1.0
2,293,672	-		GFF2264	0.25	-0.5
2,293,674	+		GFF2264	0.26	-0.2
2,293,684	-		GFF2264	0.26	-1.4
2,293,694	-		GFF2264	0.27	-1.2
2,293,697	+		GFF2264	0.27	+0.1
2,293,698	+		GFF2264	0.27	-0.3
2,293,721	+		GFF2264	0.29	-1.3
2,293,738	+		GFF2264	0.30	-0.0
2,293,739	-		GFF2264	0.30	+1.1
2,293,744	+		GFF2264	0.31	+0.3
2,293,778	+		GFF2264	0.33	+0.6
2,293,798	-		GFF2264	0.35	+0.5
2,293,807	-		GFF2264	0.35	+1.0
2,293,807	-		GFF2264	0.35	-0.0
2,293,812	+		GFF2264	0.36	+1.2
2,293,812	+		GFF2264	0.36	+0.0
2,293,835	-		GFF2264	0.37	-1.5
2,293,838	-		GFF2264	0.37	+0.1
2,293,854	+		GFF2264	0.39	-0.2
2,293,854	+		GFF2264	0.39	-2.8
2,293,854	+		GFF2264	0.39	+0.4
2,293,854	+		GFF2264	0.39	-1.6
2,293,862	-		GFF2264	0.39	-1.4
2,293,862	-		GFF2264	0.39	-2.6
2,293,862	-		GFF2264	0.39	-3.3
2,293,862	-		GFF2264	0.39	-1.6
2,293,862	-		GFF2264	0.39	-0.5
2,293,862	-		GFF2264	0.39	-0.6
2,293,862	-		GFF2264	0.39	-0.6
2,293,862	-		GFF2264	0.39	-0.6
2,293,913	+		GFF2264	0.43	-0.6
2,293,968	+		GFF2264	0.47	+0.2
2,293,977	+		GFF2264	0.48	+1.5
2,293,991	-		GFF2264	0.49	-2.0
2,293,995	+		GFF2264	0.49	-0.0
2,294,016	-		GFF2264	0.50	-0.9
2,294,035	+		GFF2264	0.52	+1.8
2,294,064	+		GFF2264	0.54	-0.3
2,294,064	+		GFF2264	0.54	+0.8
2,294,069	+		GFF2264	0.54	+0.1
2,294,069	+		GFF2264	0.54	+1.4
2,294,082	-		GFF2264	0.55	-0.2
2,294,098	-		GFF2264	0.56	+1.2
2,294,125	-		GFF2264	0.58	+0.2
2,294,138	-		GFF2264	0.59	-1.1
2,294,140	+		GFF2264	0.59	-0.1
2,294,186	+		GFF2264	0.63	+0.8
2,294,281	+		GFF2264	0.69	+0.1
2,294,307	+		GFF2264	0.71	+0.2
2,294,315	-		GFF2264	0.72	-0.7
2,294,317	+		GFF2264	0.72	-0.5
2,294,317	+		GFF2264	0.72	-2.3
2,294,325	-		GFF2264	0.73	+1.2
2,294,325	-		GFF2264	0.73	+0.1
2,294,325	-		GFF2264	0.73	-1.2
2,294,327	+		GFF2264	0.73	-0.3
2,294,366	+		GFF2264	0.76	-0.1
2,294,383	+		GFF2264	0.77	-1.6
2,294,388	+		GFF2264	0.77	+1.0
2,294,393	+		GFF2264	0.78	+1.5
2,294,396	-		GFF2264	0.78	+0.7
2,294,401	-		GFF2264	0.78	-1.2
2,294,412	-		GFF2264	0.79	+0.5
2,294,414	+		GFF2264	0.79	+0.1
2,294,414	+		GFF2264	0.79	+0.1
2,294,422	-		GFF2264	0.80	-0.2
2,294,422	-		GFF2264	0.80	-0.9
2,294,422	-		GFF2264	0.80	-0.5
2,294,459	+		GFF2264	0.82	-1.5
2,294,480	+		GFF2264	0.84	+0.4
2,294,480	+		GFF2264	0.84	-0.7
2,294,480	+		GFF2264	0.84	-0.6
2,294,480	+		GFF2264	0.84	-0.8
2,294,480	+		GFF2264	0.84	-1.4
2,294,480	+		GFF2264	0.84	-3.0
2,294,480	+		GFF2264	0.84	-0.5
2,294,480	+		GFF2264	0.84	-1.2
2,294,480	+		GFF2264	0.84	-1.1
2,294,488	-		GFF2264	0.84	+0.3
2,294,488	-		GFF2264	0.84	+0.3
2,294,488	-		GFF2264	0.84	-0.3
2,294,488	-		GFF2264	0.84	-0.9
2,294,556	-		GFF2264	0.89	+0.4
2,294,569	+				-1.1
2,294,577	-				+0.9
2,294,601	+				-0.1
2,294,609	-				+0.2
2,294,645	-				-1.6
2,294,665	-				+0.5
2,294,691	-				-1.4
2,294,696	+				-2.9
2,294,696	+				-1.4
2,294,696	+				-0.4
2,294,701	+				+0.6
2,294,701	+				-0.9
2,294,704	-				+1.4
2,294,706	+				-0.6
2,294,738	-				+0.6
2,294,747	-				-0.7
2,294,761	+				-0.2
2,294,810	+		GFF2265	0.11	-2.0
2,294,818	-		GFF2265	0.12	-0.0
2,294,832	-		GFF2265	0.13	+0.0
2,294,925	+		GFF2265	0.24	-0.8
2,294,933	-		GFF2265	0.25	-2.2
2,294,959	-		GFF2265	0.28	-0.1
2,294,960	+		GFF2265	0.28	+0.8
2,294,960	+		GFF2265	0.28	+0.6
2,294,965	+		GFF2265	0.29	-2.4
2,294,970	+		GFF2265	0.30	+0.5
2,294,973	-		GFF2265	0.30	+0.1
2,294,973	-		GFF2265	0.30	-0.1
2,294,973	-		GFF2265	0.30	+0.0
2,294,973	-		GFF2265	0.30	-0.2
2,294,973	-		GFF2265	0.30	-0.3
2,294,973	-		GFF2265	0.30	-0.7
2,294,973	-		GFF2265	0.30	-0.7
2,294,973	-		GFF2265	0.30	-0.3
2,294,978	-		GFF2265	0.30	+0.1
2,294,978	-		GFF2265	0.30	-0.9
2,294,995	+		GFF2265	0.33	+0.2
2,295,023	+		GFF2265	0.36	+0.1
2,295,028	+		GFF2265	0.36	-0.1
2,295,030	+		GFF2265	0.37	+0.0
2,295,030	+		GFF2265	0.37	+0.9
2,295,030	+		GFF2265	0.37	-1.3
2,295,030	+		GFF2265	0.37	+1.4
2,295,030	+		GFF2265	0.37	-0.4
2,295,030	+		GFF2265	0.37	-0.9
2,295,031	-		GFF2265	0.37	-0.7
2,295,038	-		GFF2265	0.38	-1.4
2,295,038	-		GFF2265	0.38	-1.9
2,295,038	-		GFF2265	0.38	-0.2
2,295,068	-		GFF2265	0.41	-0.8
2,295,073	+		GFF2265	0.42	-0.3
2,295,081	-		GFF2265	0.43	-2.0
2,295,086	-		GFF2265	0.43	+0.3
2,295,122	+		GFF2265	0.48	-2.2
2,295,126	-		GFF2265	0.48	-1.8
2,295,126	-		GFF2265	0.48	-0.1
2,295,160	+		GFF2265	0.52	+1.0
2,295,185	+		GFF2265	0.55	-0.2
2,295,192	+		GFF2265	0.56	-0.8
2,295,192	+		GFF2265	0.56	-1.1
2,295,199	-		GFF2265	0.57	+0.2
2,295,241	+		GFF2265	0.62	-1.3
2,295,270	+		GFF2265	0.65	+0.2
2,295,273	-		GFF2265	0.65	+0.6
2,295,339	-		GFF2265	0.73	-1.3
2,295,344	-		GFF2265	0.74	+0.1
2,295,356	+		GFF2265	0.75	-0.2
2,295,374	+		GFF2265	0.77	-0.0
2,295,374	+		GFF2265	0.77	-1.4
2,295,391	-		GFF2265	0.79	-0.2
2,295,391	-		GFF2265	0.79	-0.2
2,295,428	+		GFF2265	0.84	+0.3
2,295,465	+		GFF2265	0.88	-0.4
2,295,475	-		GFF2265	0.89	-0.3
2,295,499	-				-0.5
2,295,507	+				-1.1
2,295,507	-				-0.2
2,295,546	+				-0.2
2,295,546	+				-0.7
2,295,546	+				-0.6
2,295,546	+				-0.1
2,295,546	+				+0.1
2,295,546	+				+1.0
2,295,546	+				+1.1
2,295,546	+				-0.3
2,295,546	+				+0.2
2,295,546	+				+0.5
2,295,552	-				-1.6
2,295,554	-				+0.0
2,295,554	-				-0.1
2,295,554	-				+0.9
2,295,554	-				-1.2
2,295,556	+				-2.5
2,295,556	+				-0.1
2,295,556	+				-0.0
2,295,556	+				-0.8
2,295,564	-				+0.1
2,295,571	+				-2.1
2,295,673	-		GFF2266	0.55	+1.2
2,295,692	-		GFF2266	0.64	-1.2
2,295,699	+		GFF2266	0.68	+1.4
2,295,699	+		GFF2266	0.68	-0.2