Strain Fitness in Sphingobium sp. HT1-2 around GFF2262

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,289,251	+				-0.3
2,289,252	+				+0.3
2,289,254	-				-0.9
2,289,256	+				-1.6
2,289,259	-				-1.4
2,289,260	-				+0.1
2,289,261	+				-2.0
2,289,279	+				-2.4
2,289,279	+				-0.2
2,289,279	+				+0.0
2,289,279	+				-0.4
2,289,279	+				+0.8
2,289,287	-				-1.3
2,289,287	-				-0.0
2,289,287	-				+0.0
2,289,294	-		GFF2261	0.10	-0.6
2,289,304	-		GFF2261	0.11	+0.3
2,289,315	+		GFF2261	0.12	+0.0
2,289,315	+		GFF2261	0.12	-1.3
2,289,317	+		GFF2261	0.13	-0.4
2,289,317	+		GFF2261	0.13	-0.1
2,289,320	-		GFF2261	0.13	-0.9
2,289,325	-		GFF2261	0.13	-1.1
2,289,325	-		GFF2261	0.13	-1.6
2,289,325	-		GFF2261	0.13	-0.8
2,289,325	-		GFF2261	0.13	+0.4
2,289,325	-		GFF2261	0.13	-1.5
2,289,325	-		GFF2261	0.13	+0.4
2,289,325	-		GFF2261	0.13	+0.9
2,289,325	-		GFF2261	0.13	-1.8
2,289,330	-		GFF2261	0.14	-2.2
2,289,362	+		GFF2261	0.17	-0.5
2,289,370	-		GFF2261	0.18	-0.0
2,289,381	+		GFF2261	0.19	-2.1
2,289,383	+		GFF2261	0.19	-0.6
2,289,408	-		GFF2261	0.21	-1.3
2,289,423	-		GFF2261	0.23	+0.9
2,289,428	-		GFF2261	0.23	-1.3
2,289,442	-		GFF2261	0.24	-0.2
2,289,445	+		GFF2261	0.25	-0.9
2,289,472	-		GFF2261	0.27	+0.1
2,289,539	+		GFF2261	0.34	-1.3
2,289,542	+		GFF2261	0.34	-1.3
2,289,543	+		GFF2261	0.34	+0.3
2,289,548	-		GFF2261	0.34	-1.7
2,289,548	-		GFF2261	0.34	-2.0
2,289,562	+		GFF2261	0.36	+0.3
2,289,566	+		GFF2261	0.36	-0.4
2,289,574	-		GFF2261	0.37	-1.0
2,289,575	-		GFF2261	0.37	-2.1
2,289,584	-		GFF2261	0.38	-1.8
2,289,623	+		GFF2261	0.42	-2.0
2,289,627	-		GFF2261	0.42	+0.4
2,289,647	+		GFF2261	0.44	-0.7
2,289,652	+		GFF2261	0.44	-0.8
2,289,652	+		GFF2261	0.44	-0.0
2,289,652	+		GFF2261	0.44	-0.1
2,289,652	+		GFF2261	0.44	+0.1
2,289,652	+		GFF2261	0.44	-0.3
2,289,660	-		GFF2261	0.45	-1.4
2,289,660	-		GFF2261	0.45	-2.4
2,289,660	-		GFF2261	0.45	-1.2
2,289,660	-		GFF2261	0.45	+0.7
2,289,660	-		GFF2261	0.45	+0.3
2,289,660	-		GFF2261	0.45	-0.2
2,289,660	-		GFF2261	0.45	-0.5
2,289,688	+		GFF2261	0.48	-0.7
2,289,696	+		GFF2261	0.48	-0.4
2,289,701	+		GFF2261	0.49	-1.6
2,289,704	-		GFF2261	0.49	-2.5
2,289,704	-		GFF2261	0.49	+0.7
2,289,709	-		GFF2261	0.50	-0.7
2,289,714	+		GFF2261	0.50	+0.2
2,289,714	-		GFF2261	0.50	-1.9
2,289,719	+		GFF2261	0.51	+0.7
2,289,719	+		GFF2261	0.51	-0.1
2,289,724	+		GFF2261	0.51	-0.2
2,289,724	+		GFF2261	0.51	-0.5
2,289,732	-		GFF2261	0.52	+0.2
2,289,739	-		GFF2261	0.53	-0.5
2,289,760	-		GFF2261	0.54	-0.9
2,289,775	-		GFF2261	0.56	+0.7
2,289,802	+		GFF2261	0.58	-0.3
2,289,823	+		GFF2261	0.60	+1.4
2,289,823	+		GFF2261	0.60	-0.6
2,289,831	-		GFF2261	0.61	-0.4
2,289,831	-		GFF2261	0.61	-0.2
2,289,851	+		GFF2261	0.63	-0.1
2,289,853	+		GFF2261	0.63	+1.6
2,289,861	-		GFF2261	0.64	-0.0
2,289,872	+		GFF2261	0.65	-0.5
2,289,882	+		GFF2261	0.66	-0.6
2,289,920	+		GFF2261	0.70	-1.4
2,289,922	-		GFF2261	0.70	+0.9
2,289,952	+		GFF2261	0.73	+1.7
2,289,980	+		GFF2261	0.75	-2.1
2,289,987	-		GFF2261	0.76	-1.3
2,290,000	-		GFF2261	0.77	-0.7
2,290,004	+		GFF2261	0.78	+0.6
2,290,004	+		GFF2261	0.78	-0.1
2,290,012	-		GFF2261	0.78	+0.1
2,290,012	-		GFF2261	0.78	-2.2
2,290,036	+		GFF2261	0.81	-1.0
2,290,054	+		GFF2261	0.82	+0.3
2,290,054	+		GFF2261	0.82	-0.7
2,290,067	-		GFF2261	0.83	-0.2
2,290,099	+		GFF2261	0.86	+0.9
2,290,099	+		GFF2261	0.86	-1.3
2,290,099	+		GFF2261	0.86	-1.0
2,290,099	+		GFF2261	0.86	+0.3
2,290,105	+		GFF2261	0.87	-0.3
2,290,105	+		GFF2261	0.87	+0.3
2,290,105	+		GFF2261	0.87	+0.4
2,290,107	-		GFF2261	0.87	+0.2
2,290,107	-		GFF2261	0.87	+0.1
2,290,107	-		GFF2261	0.87	+0.1
2,290,113	-		GFF2261	0.88	-1.9
2,290,113	-		GFF2261	0.88	-0.6
2,290,113	-		GFF2261	0.88	+0.5
2,290,113	-		GFF2261	0.88	+0.7
2,290,113	-		GFF2261	0.88	-0.5
2,290,113	-		GFF2261	0.88	-0.1
2,290,118	+		GFF2261	0.88	+0.1
2,290,152	-				-1.1
2,290,170	+				+0.7
2,290,170	+				+1.0
2,290,170	+				-0.6
2,290,170	+				-0.7
2,290,170	+				+1.2
2,290,170	+				-0.4
2,290,170	+				-0.9
2,290,178	-				-0.4
2,290,178	-				+0.6
2,290,178	-				-0.7
2,290,178	-				-0.8
2,290,178	-				+0.1
2,290,178	-				+0.4
2,290,221	-				+0.3
2,290,250	-				+0.5
2,290,307	+		GFF2262	0.54	+1.1
2,290,317	-		GFF2262	0.62	+0.7
2,290,322	-		GFF2262	0.67	+0.7
2,290,324	+		GFF2262	0.68	-0.2
2,290,327	-		GFF2262	0.71	+0.9
2,290,363	-				+0.2
2,290,505	+				+0.9
2,290,526	-				-0.0
2,290,549	+				-0.4
2,290,557	-				-1.0
2,290,561	+				+0.6
2,290,569	-				+0.4
2,290,572	+				+0.3
2,290,600	+				-0.1
2,290,600	+				-0.4
2,290,600	+				-1.5
2,290,608	-				+0.5
2,290,614	+				-0.4
2,290,616	+				-0.8
2,290,619	+				-2.5
2,290,624	-				+0.4
2,290,660	+				-0.1
2,290,661	-				-0.1
2,290,661	-				-1.9
2,290,661	-				-1.5
2,290,668	-				+0.8
2,290,668	-				-0.4
2,290,696	-		GFF2263	0.11	-1.6
2,290,696	-		GFF2263	0.11	+0.0
2,290,706	-		GFF2263	0.11	+1.1
2,290,710	+		GFF2263	0.11	+0.0
2,290,710	+		GFF2263	0.11	+0.8
2,290,710	+		GFF2263	0.11	+0.1
2,290,735	+		GFF2263	0.12	+0.9
2,290,735	+		GFF2263	0.12	+0.4
2,290,743	-		GFF2263	0.12	-1.1
2,290,752	+		GFF2263	0.13	-0.7
2,290,758	+		GFF2263	0.13	+0.6
2,290,758	+		GFF2263	0.13	-0.7
2,290,758	+		GFF2263	0.13	-0.5
2,290,762	+		GFF2263	0.13	-1.1
2,290,766	-		GFF2263	0.13	+0.1
2,290,766	-		GFF2263	0.13	-0.9
2,290,766	-		GFF2263	0.13	-0.7
2,290,766	-		GFF2263	0.13	+0.9
2,290,766	-		GFF2263	0.13	+1.2
2,290,766	-		GFF2263	0.13	+0.9
2,290,766	-		GFF2263	0.13	+0.5
2,290,776	-		GFF2263	0.13	-1.2
2,290,783	-		GFF2263	0.14	-0.7
2,290,785	+		GFF2263	0.14	-0.5
2,290,832	+		GFF2263	0.15	-0.8
2,290,836	-		GFF2263	0.16	-0.4
2,290,861	+		GFF2263	0.16	-2.0
2,290,869	-		GFF2263	0.17	-3.7
2,290,869	-		GFF2263	0.17	+1.3
2,290,869	-		GFF2263	0.17	-1.0
2,290,869	-		GFF2263	0.17	-1.4
2,290,876	+		GFF2263	0.17	-2.6
2,290,876	+		GFF2263	0.17	+0.3
2,290,876	-		GFF2263	0.17	+1.1
2,290,876	-		GFF2263	0.17	-0.6
2,290,889	-		GFF2263	0.17	+0.2
2,290,902	-		GFF2263	0.18	+1.2
2,290,908	-		GFF2263	0.18	-1.7
2,290,910	+		GFF2263	0.18	-0.3
2,290,918	-		GFF2263	0.18	+0.0
2,290,972	+		GFF2263	0.20	+1.1
2,290,972	+		GFF2263	0.20	+0.1
2,290,972	+		GFF2263	0.20	+1.1
2,290,972	+		GFF2263	0.20	-0.2
2,290,972	+		GFF2263	0.20	-1.3
2,290,980	+		GFF2263	0.21	+0.7
2,290,980	+		GFF2263	0.21	+0.7
2,290,980	+		GFF2263	0.21	+0.8
2,290,980	+		GFF2263	0.21	-0.4
2,290,980	+		GFF2263	0.21	-2.1
2,290,980	+		GFF2263	0.21	-0.0
2,290,980	-		GFF2263	0.21	-0.6
2,290,980	-		GFF2263	0.21	-1.3
2,290,980	-		GFF2263	0.21	-0.2
2,290,980	-		GFF2263	0.21	-0.9
2,290,980	-		GFF2263	0.21	-2.3
2,290,988	-		GFF2263	0.21	-0.3
2,290,988	-		GFF2263	0.21	+0.1
2,290,988	-		GFF2263	0.21	-0.1
2,290,988	-		GFF2263	0.21	-0.4
2,290,988	-		GFF2263	0.21	-1.8
2,290,990	+		GFF2263	0.21	+1.1
2,291,003	+		GFF2263	0.21	-1.0
2,291,004	+		GFF2263	0.21	+0.2
2,291,004	+		GFF2263	0.21	+0.3
2,291,004	+		GFF2263	0.21	-0.6
2,291,004	+		GFF2263	0.21	-0.6
2,291,004	+		GFF2263	0.21	-0.1
2,291,004	+		GFF2263	0.21	-2.8
2,291,004	+		GFF2263	0.21	-2.0
2,291,004	+		GFF2263	0.21	-1.4
2,291,004	+		GFF2263	0.21	-0.4
2,291,004	+		GFF2263	0.21	-1.1
2,291,012	-		GFF2263	0.22	-1.8
2,291,012	-		GFF2263	0.22	-0.0
2,291,012	-		GFF2263	0.22	+0.2
2,291,019	-		GFF2263	0.22	-0.5
2,291,042	-		GFF2263	0.23	-0.6
2,291,044	+		GFF2263	0.23	+0.4
2,291,075	+		GFF2263	0.24	-0.1
2,291,108	+		GFF2263	0.25	-0.3
2,291,116	-		GFF2263	0.25	-0.7
2,291,116	-		GFF2263	0.25	+0.1
2,291,118	+		GFF2263	0.25	+0.4
2,291,118	+		GFF2263	0.25	-1.5
2,291,118	+		GFF2263	0.25	-0.3
2,291,118	+		GFF2263	0.25	+0.5
2,291,118	+		GFF2263	0.25	-0.4
2,291,118	+		GFF2263	0.25	+0.1
2,291,118	+		GFF2263	0.25	+0.8
2,291,118	+		GFF2263	0.25	+0.3
2,291,118	+		GFF2263	0.25	-0.7
2,291,118	+		GFF2263	0.25	-0.3
2,291,118	+		GFF2263	0.25	+1.1
2,291,118	+		GFF2263	0.25	-1.6
2,291,118	+		GFF2263	0.25	-1.4
2,291,118	+		GFF2263	0.25	-1.7
2,291,126	-		GFF2263	0.26	-2.0
2,291,126	-		GFF2263	0.26	-0.4
2,291,126	-		GFF2263	0.26	-0.3
2,291,126	-		GFF2263	0.26	+0.5
2,291,126	-		GFF2263	0.26	-0.7
2,291,126	-		GFF2263	0.26	-0.5
2,291,126	-		GFF2263	0.26	-2.0
2,291,126	-		GFF2263	0.26	-0.0
2,291,126	-		GFF2263	0.26	-0.2
2,291,129	+		GFF2263	0.26	-0.2
2,291,137	-		GFF2263	0.26	+0.4
2,291,137	-		GFF2263	0.26	-1.6
2,291,137	-		GFF2263	0.26	+0.3
2,291,137	-		GFF2263	0.26	-1.0
2,291,142	+		GFF2263	0.26	-0.4
2,291,142	+		GFF2263	0.26	-1.5
2,291,155	-		GFF2263	0.27	-2.2
2,291,209	-		GFF2263	0.29	+0.3
2,291,235	-		GFF2263	0.30	-0.9
2,291,235	-		GFF2263	0.30	-1.0
2,291,246	-		GFF2263	0.30	+0.2
2,291,247	+		GFF2263	0.30	-0.9
2,291,264	-		GFF2263	0.31	-0.2
2,291,284	+		GFF2263	0.31	+1.0
2,291,304	+		GFF2263	0.32	+0.4
2,291,312	-		GFF2263	0.32	+1.4
2,291,317	-		GFF2263	0.33	+0.7
2,291,341	+		GFF2263	0.33	-1.1