Strain Fitness in Sphingobium sp. HT1-2 around GFF2259

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,287,276	-				-0.0
2,287,276	-				-0.5
2,287,279	+				+0.6
2,287,283	-				-1.2
2,287,283	-				+0.3
2,287,326	+				+0.4
2,287,334	-				-0.7
2,287,334	-				-1.2
2,287,335	+				+0.0
2,287,365	+		GFF2259	0.14	-1.8
2,287,373	+		GFF2259	0.15	-0.3
2,287,373	-		GFF2259	0.15	-0.2
2,287,378	-		GFF2259	0.16	-2.5
2,287,380	+		GFF2259	0.16	-1.1
2,287,383	-		GFF2259	0.16	-1.1
2,287,383	-		GFF2259	0.16	-0.2
2,287,385	+		GFF2259	0.16	+0.3
2,287,385	+		GFF2259	0.16	+0.0
2,287,385	+		GFF2259	0.16	+1.0
2,287,385	+		GFF2259	0.16	-0.5
2,287,385	+		GFF2259	0.16	-0.4
2,287,385	+		GFF2259	0.16	-1.4
2,287,392	+		GFF2259	0.17	+0.4
2,287,392	+		GFF2259	0.17	-0.8
2,287,392	+		GFF2259	0.17	-0.2
2,287,393	-		GFF2259	0.18	-0.1
2,287,393	-		GFF2259	0.18	-0.9
2,287,400	-		GFF2259	0.18	-0.3
2,287,400	-		GFF2259	0.18	+1.8
2,287,400	-		GFF2259	0.18	-0.2
2,287,400	-		GFF2259	0.18	-0.6
2,287,400	-		GFF2259	0.18	-2.0
2,287,419	+		GFF2259	0.21	+0.1
2,287,422	-		GFF2259	0.21	+0.5
2,287,439	+		GFF2259	0.24	-0.3
2,287,447	-		GFF2259	0.25	-0.3
2,287,480	-		GFF2259	0.29	+0.4
2,287,529	+		GFF2259	0.35	-1.5
2,287,542	+		GFF2259	0.37	-2.2
2,287,550	-		GFF2259	0.38	-2.3
2,287,558	+		GFF2259	0.39	-1.1
2,287,559	+		GFF2259	0.39	+0.2
2,287,559	+		GFF2259	0.39	-1.3
2,287,559	+		GFF2259	0.39	+0.4
2,287,566	-		GFF2259	0.40	+1.4
2,287,567	-		GFF2259	0.40	+0.9
2,287,625	+		GFF2259	0.48	+0.0
2,287,631	+		GFF2259	0.49	+0.1
2,287,637	+		GFF2259	0.49	+0.4
2,287,637	+		GFF2259	0.49	-1.6
2,287,637	+		GFF2259	0.49	+0.4
2,287,638	-		GFF2259	0.50	-0.9
2,287,644	-		GFF2259	0.50	-1.2
2,287,644	-		GFF2259	0.50	+0.0
2,287,644	-		GFF2259	0.50	-0.5
2,287,644	-		GFF2259	0.50	-1.1
2,287,645	-		GFF2259	0.50	+1.5
2,287,664	+		GFF2259	0.53	-0.1
2,287,665	-		GFF2259	0.53	-0.4
2,287,682	+		GFF2259	0.55	-0.2
2,287,687	+		GFF2259	0.56	-0.5
2,287,687	+		GFF2259	0.56	-0.0
2,287,687	+		GFF2259	0.56	-0.5
2,287,687	+		GFF2259	0.56	-1.6
2,287,687	+		GFF2259	0.56	+0.1
2,287,687	+		GFF2259	0.56	-0.3
2,287,687	+		GFF2259	0.56	-0.0
2,287,687	+		GFF2259	0.56	-1.3
2,287,687	+		GFF2259	0.56	+0.7
2,287,687	+		GFF2259	0.56	-0.6
2,287,687	+		GFF2259	0.56	+0.7
2,287,687	+		GFF2259	0.56	+1.2
2,287,687	+		GFF2259	0.56	-1.0
2,287,687	+		GFF2259	0.56	+0.3
2,287,687	+		GFF2259	0.56	-1.8
2,287,687	+		GFF2259	0.56	+0.1
2,287,690	-		GFF2259	0.56	-1.4
2,287,695	-		GFF2259	0.57	+0.1
2,287,695	-		GFF2259	0.57	+0.0
2,287,695	-		GFF2259	0.57	+0.4
2,287,695	-		GFF2259	0.57	-0.6
2,287,695	-		GFF2259	0.57	+0.3
2,287,695	-		GFF2259	0.57	-0.1
2,287,695	-		GFF2259	0.57	-3.1
2,287,695	-		GFF2259	0.57	-0.3
2,287,695	-		GFF2259	0.57	-0.3
2,287,695	-		GFF2259	0.57	+0.4
2,287,695	-		GFF2259	0.57	+1.6
2,287,695	-		GFF2259	0.57	-0.8
2,287,695	-		GFF2259	0.57	-0.5
2,287,695	-		GFF2259	0.57	+0.1
2,287,695	-		GFF2259	0.57	-0.4
2,287,695	-		GFF2259	0.57	-0.1
2,287,695	-		GFF2259	0.57	+0.1
2,287,742	-		GFF2259	0.63	-1.0
2,287,747	-		GFF2259	0.64	-0.8
2,287,750	-		GFF2259	0.64	+0.3
2,287,772	+		GFF2259	0.67	-1.1
2,287,777	+		GFF2259	0.68	+0.1
2,287,782	+		GFF2259	0.68	+1.1
2,287,782	+		GFF2259	0.68	-2.6
2,287,782	+		GFF2259	0.68	+0.1
2,287,783	+		GFF2259	0.68	-0.4
2,287,783	+		GFF2259	0.68	-0.5
2,287,783	+		GFF2259	0.68	-1.9
2,287,783	+		GFF2259	0.68	-0.7
2,287,783	+		GFF2259	0.68	+1.1
2,287,783	+		GFF2259	0.68	-0.2
2,287,783	+		GFF2259	0.68	-1.6
2,287,783	+		GFF2259	0.68	+0.6
2,287,783	+		GFF2259	0.68	-0.9
2,287,783	+		GFF2259	0.68	+1.0
2,287,783	+		GFF2259	0.68	-0.6
2,287,783	+		GFF2259	0.68	-1.0
2,287,783	+		GFF2259	0.68	+0.9
2,287,783	+		GFF2259	0.68	-1.2
2,287,783	+		GFF2259	0.68	-1.6
2,287,783	+		GFF2259	0.68	-0.5
2,287,783	+		GFF2259	0.68	-0.4
2,287,783	+		GFF2259	0.68	-1.1
2,287,783	+		GFF2259	0.68	-1.4
2,287,783	+		GFF2259	0.68	-1.3
2,287,783	+		GFF2259	0.68	+0.2
2,287,783	+		GFF2259	0.68	-2.6
2,287,783	+		GFF2259	0.68	-1.7
2,287,783	+		GFF2259	0.68	-1.3
2,287,783	+		GFF2259	0.68	-1.4
2,287,785	-		GFF2259	0.69	-2.5
2,287,790	-		GFF2259	0.69	-0.2
2,287,790	-		GFF2259	0.69	-0.4
2,287,790	-		GFF2259	0.69	+0.4
2,287,790	-		GFF2259	0.69	-0.3
2,287,791	-		GFF2259	0.70	+0.7
2,287,791	-		GFF2259	0.70	-1.0
2,287,791	-		GFF2259	0.70	+0.4
2,287,791	-		GFF2259	0.70	-0.7
2,287,791	-		GFF2259	0.70	-1.0
2,287,791	-		GFF2259	0.70	+1.1
2,287,791	-		GFF2259	0.70	+0.4
2,287,791	-		GFF2259	0.70	-0.7
2,287,791	-		GFF2259	0.70	-1.5
2,287,791	-		GFF2259	0.70	+0.9
2,287,791	-		GFF2259	0.70	+0.4
2,287,791	-		GFF2259	0.70	-0.8
2,287,791	-		GFF2259	0.70	+1.3
2,287,791	-		GFF2259	0.70	-1.6
2,287,791	-		GFF2259	0.70	+0.0
2,287,791	-		GFF2259	0.70	+0.1
2,287,791	-		GFF2259	0.70	-1.3
2,287,791	-		GFF2259	0.70	-1.3
2,287,791	-		GFF2259	0.70	+0.6
2,287,791	-		GFF2259	0.70	+0.2
2,287,791	-		GFF2259	0.70	+0.7
2,287,791	-		GFF2259	0.70	-0.5
2,287,791	-		GFF2259	0.70	+0.3
2,287,791	-		GFF2259	0.70	-0.3
2,287,791	-		GFF2259	0.70	-2.0
2,287,810	-		GFF2259	0.72	+0.9
2,287,820	-		GFF2259	0.73	+0.2
2,287,838	-		GFF2259	0.76	-1.5
2,287,878	+		GFF2259	0.81	+0.6
2,287,883	+		GFF2259	0.82	-2.3
2,287,883	+		GFF2259	0.82	-0.9
2,287,883	+		GFF2259	0.82	-1.2
2,287,886	-		GFF2259	0.82	-0.9
2,287,891	-		GFF2259	0.83	+0.7
2,287,891	-		GFF2259	0.83	-1.7
2,287,892	-		GFF2259	0.83	+0.1
2,287,909	+		GFF2259	0.85	-1.1
2,287,914	+		GFF2259	0.86	-0.2
2,287,950	+				-0.2
2,287,981	+				+1.0
2,288,011	-				-1.0
2,288,022	+				-0.3
2,288,022	+				-0.4
2,288,022	+				+0.5
2,288,022	+				+0.0
2,288,022	+				+0.2
2,288,022	+				-1.4
2,288,022	+				+0.4
2,288,022	+				-0.5
2,288,022	+				-2.1
2,288,030	-				+0.7
2,288,030	-				-0.8
2,288,030	-				-0.1
2,288,030	-				-0.3
2,288,030	-				-1.0
2,288,030	-				-0.7
2,288,030	-				+0.0
2,288,030	-				-0.3
2,288,030	-				-0.4
2,288,030	-				-1.8
2,288,030	-				+0.2
2,288,030	-				+0.4
2,288,030	-				-1.3
2,288,030	-				-1.2
2,288,030	-				+0.4
2,288,030	-				+0.6
2,288,030	-				+0.1
2,288,030	-				-0.6
2,288,030	-				-0.3
2,288,043	+				-0.9
2,288,043	+				+1.3
2,288,051	-				-1.9
2,288,051	-				-1.5
2,288,055	+				-1.2
2,288,055	+				+0.0
2,288,087	-				-0.0
2,288,112	+				+1.7
2,288,112	+				-0.6
2,288,117	+				-1.5
2,288,122	-				-0.3
2,288,128	+				-1.2
2,288,128	+				+0.1
2,288,128	+				-0.2
2,288,128	+				-1.3
2,288,128	+				-1.2
2,288,128	+				-0.0
2,288,128	+				-0.2
2,288,128	+				+0.7
2,288,128	+				-1.0
2,288,128	+				+0.0
2,288,128	+				+0.5
2,288,128	+				+0.3
2,288,128	+				-1.3
2,288,128	+				-1.2
2,288,128	+				-0.9
2,288,128	+				-0.5
2,288,128	+				+0.7
2,288,128	+				-0.4
2,288,131	-				-2.6
2,288,133	+				-0.9
2,288,133	+				-0.6
2,288,133	+				+1.2
2,288,136	-				+1.0
2,288,136	-				-1.4
2,288,136	-				+1.1
2,288,136	-				-1.1
2,288,136	-				-2.2
2,288,136	-				+0.5
2,288,136	-				+0.3
2,288,136	-				+0.2
2,288,136	-				+0.4
2,288,136	-				+0.4
2,288,136	-				+0.3
2,288,136	-				-0.2
2,288,136	-				-0.8
2,288,136	-				-0.4
2,288,136	-				+0.3
2,288,136	-				+0.7
2,288,136	-				+0.5
2,288,136	-				+0.4
2,288,136	-				-1.5
2,288,141	-				-1.2
2,288,141	-				-0.2
2,288,141	-				-0.1
2,288,153	-				-0.8
2,288,155	+				-0.8
2,288,155	-				-0.8
2,288,160	+				-0.1
2,288,160	+				-0.5
2,288,162	+		GFF2260	0.10	-1.9
2,288,168	-		GFF2260	0.11	-1.4
2,288,184	-		GFF2260	0.12	-0.5
2,288,218	+		GFF2260	0.15	-0.6
2,288,226	-		GFF2260	0.16	-1.0
2,288,239	-		GFF2260	0.17	-0.4
2,288,247	-		GFF2260	0.18	-1.6
2,288,247	-		GFF2260	0.18	-1.3
2,288,252	+		GFF2260	0.18	-1.0
2,288,253	+		GFF2260	0.18	+0.8
2,288,261	-		GFF2260	0.19	-0.4
2,288,262	+		GFF2260	0.19	-1.6
2,288,262	+		GFF2260	0.19	+0.2
2,288,262	+		GFF2260	0.19	-1.4
2,288,262	+		GFF2260	0.19	+0.1
2,288,262	+		GFF2260	0.19	+0.6
2,288,262	+		GFF2260	0.19	-0.2
2,288,262	+		GFF2260	0.19	-0.1
2,288,262	+		GFF2260	0.19	+0.4
2,288,262	+		GFF2260	0.19	-0.6
2,288,262	+		GFF2260	0.19	+0.8
2,288,270	-		GFF2260	0.20	+0.9
2,288,270	-		GFF2260	0.20	+0.4
2,288,270	-		GFF2260	0.20	+0.6
2,288,270	-		GFF2260	0.20	-0.2
2,288,270	-		GFF2260	0.20	-0.0
2,288,270	-		GFF2260	0.20	-0.1
2,288,270	-		GFF2260	0.20	-1.7
2,288,270	-		GFF2260	0.20	-0.0
2,288,270	-		GFF2260	0.20	-1.2
2,288,270	-		GFF2260	0.20	-0.9
2,288,270	-		GFF2260	0.20	-1.6
2,288,270	-		GFF2260	0.20	+0.3
2,288,270	-		GFF2260	0.20	+0.5
2,288,270	-		GFF2260	0.20	-0.2
2,288,280	+		GFF2260	0.20	-0.9
2,288,280	+		GFF2260	0.20	-0.1
2,288,285	-		GFF2260	0.21	-2.7
2,288,293	-		GFF2260	0.22	+0.2
2,288,311	+		GFF2260	0.23	-0.2
2,288,311	+		GFF2260	0.23	+1.4
2,288,311	+		GFF2260	0.23	-0.5
2,288,313	+		GFF2260	0.23	-2.1
2,288,313	+		GFF2260	0.23	-1.6
2,288,313	+		GFF2260	0.23	-0.2
2,288,313	+		GFF2260	0.23	-0.6
2,288,318	+		GFF2260	0.24	-0.1
2,288,319	-		GFF2260	0.24	-1.3
2,288,319	-		GFF2260	0.24	+0.6
2,288,321	+		GFF2260	0.24	-0.3
2,288,321	-		GFF2260	0.24	+0.4
2,288,321	-		GFF2260	0.24	-0.3
2,288,321	-		GFF2260	0.24	+0.1
2,288,321	-		GFF2260	0.24	+0.4
2,288,328	+		GFF2260	0.25	-1.0
2,288,332	+		GFF2260	0.25	-1.7
2,288,333	+		GFF2260	0.25	-0.4
2,288,333	+		GFF2260	0.25	+0.6
2,288,348	-		GFF2260	0.26	-0.3
2,288,366	+		GFF2260	0.28	-0.6
2,288,399	-		GFF2260	0.31	-0.9
2,288,399	-		GFF2260	0.31	-0.6
2,288,399	-		GFF2260	0.31	+1.5
2,288,404	+		GFF2260	0.31	-0.3
2,288,407	-		GFF2260	0.32	+0.7
2,288,409	+		GFF2260	0.32	+0.2
2,288,409	+		GFF2260	0.32	-1.7
2,288,411	+		GFF2260	0.32	+0.1
2,288,423	+		GFF2260	0.33	+0.7
2,288,423	+		GFF2260	0.33	+0.7
2,288,428	+		GFF2260	0.33	-1.8
2,288,428	+		GFF2260	0.33	+0.3
2,288,428	+		GFF2260	0.33	-0.9
2,288,428	+		GFF2260	0.33	+0.2
2,288,428	+		GFF2260	0.33	-1.7
2,288,428	+		GFF2260	0.33	-2.6
2,288,428	+		GFF2260	0.33	-0.1
2,288,428	+		GFF2260	0.33	-0.5
2,288,428	+		GFF2260	0.33	+0.2
2,288,436	-		GFF2260	0.34	+0.1
2,288,436	-		GFF2260	0.34	-0.1
2,288,436	-		GFF2260	0.34	-2.2
2,288,436	-		GFF2260	0.34	-0.3
2,288,436	-		GFF2260	0.34	-1.2
2,288,436	-		GFF2260	0.34	+0.8
2,288,437	+		GFF2260	0.34	+1.0
2,288,467	-		GFF2260	0.37	-0.1
2,288,467	-		GFF2260	0.37	+0.7
2,288,475	+		GFF2260	0.38	-1.0
2,288,475	+		GFF2260	0.38	+0.2
2,288,477	-		GFF2260	0.38	-0.6
2,288,483	-		GFF2260	0.38	+0.5
2,288,502	+		GFF2260	0.40	+0.1
2,288,502	+		GFF2260	0.40	-0.1
2,288,502	+		GFF2260	0.40	-0.9
2,288,502	+		GFF2260	0.40	+1.2
2,288,502	+		GFF2260	0.40	-0.6
2,288,502	+		GFF2260	0.40	+0.3
2,288,502	+		GFF2260	0.40	+0.1
2,288,510	-		GFF2260	0.41	-1.9
2,288,510	-		GFF2260	0.41	+1.3
2,288,510	-		GFF2260	0.41	-0.5
2,288,510	-		GFF2260	0.41	+1.5
2,288,510	-		GFF2260	0.41	-0.0
2,288,514	+		GFF2260	0.41	+0.1
2,288,520	+		GFF2260	0.41	+0.7
2,288,543	-		GFF2260	0.44	-1.3
2,288,547	+		GFF2260	0.44	-0.2
2,288,547	+		GFF2260	0.44	+0.5
2,288,555	+		GFF2260	0.45	-0.3
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