Strain Fitness in Sphingobium sp. HT1-2 around GFF2251

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,281,338	+				-1.5
2,281,346	-				-1.5
2,281,362	+				+1.0
2,281,370	-				-1.9
2,281,370	-				+0.9
2,281,381	-				-2.2
2,281,382	-				-1.0
2,281,388	+				-1.0
2,281,397	+				-1.0
2,281,397	+				-1.5
2,281,405	-				+1.0
2,281,405	-				-0.1
2,281,427	-				+0.3
2,281,442	-				-1.1
2,281,453	+				-0.0
2,281,453	+				-1.8
2,281,454	+				-0.3
2,281,461	-				+0.1
2,281,463	+				+1.6
2,281,469	+				+0.4
2,281,544	-				-0.4
2,281,558	+				-0.9
2,281,561	-				+1.2
2,281,566	-				+1.4
2,281,568	+				-0.5
2,281,604	+				+0.0
2,281,605	-				+0.2
2,281,612	-				-1.2
2,281,619	+				-0.5
2,281,619	-				-0.1
2,281,625	+				+1.1
2,281,625	+				-0.0
2,281,625	+				-1.4
2,281,625	+				+0.8
2,281,625	+				-0.2
2,281,625	+				-0.4
2,281,625	+				+0.3
2,281,625	+				-0.5
2,281,626	-				-0.1
2,281,628	-				-2.5
2,281,628	-				-2.6
2,281,628	-				+0.2
2,281,633	-				-0.3
2,281,633	-				+0.4
2,281,633	-				-0.1
2,281,646	+				-2.0
2,281,663	+				-0.7
2,281,670	+				+0.3
2,281,671	+				+1.5
2,281,671	-				-2.0
2,281,678	-				+0.5
2,281,679	-				-0.8
2,281,679	-				+0.0
2,281,679	-				-0.6
2,281,689	+				-0.9
2,281,690	+				-0.5
2,281,690	+				+0.5
2,281,690	+				-1.4
2,281,690	+				-0.7
2,281,690	+				-0.3
2,281,690	+				-0.4
2,281,694	+				-0.4
2,281,698	-				+0.3
2,281,698	-				-0.3
2,281,698	-				-2.2
2,281,698	-				-0.3
2,281,698	-				+0.8
2,281,698	-				-0.8
2,281,702	-				-1.3
2,281,708	-				+1.0
2,281,743	+				-0.3
2,281,743	+				-0.4
2,281,743	+				-0.2
2,281,751	-				+1.4
2,281,755	+				-0.6
2,281,755	+				-1.3
2,281,755	+				-0.8
2,281,755	+				-1.0
2,281,755	+				-0.6
2,281,755	+				+0.7
2,281,755	+				-1.0
2,281,755	+				-2.3
2,281,755	+				-0.6
2,281,755	+				-0.5
2,281,755	+				-1.3
2,281,763	-				+0.1
2,281,763	-				-0.5
2,281,763	-				-1.7
2,281,763	-				-1.5
2,281,763	-				-0.6
2,281,763	-				-0.3
2,281,766	+				-0.5
2,281,766	+				+0.5
2,281,766	+				+0.7
2,281,766	+				-0.3
2,281,772	-				-1.0
2,281,774	-				+1.4
2,281,774	-				-0.2
2,281,774	-				-0.5
2,281,774	-				-1.4
2,281,788	+				+0.4
2,281,832	-		GFF2250	0.18	+0.1
2,281,845	-		GFF2250	0.21	-0.0
2,281,853	+		GFF2250	0.23	+0.9
2,281,861	-		GFF2250	0.25	+0.6
2,281,866	-		GFF2250	0.26	-1.9
2,281,912	+		GFF2250	0.35	-0.1
2,281,915	-		GFF2250	0.36	+0.2
2,281,952	+		GFF2250	0.44	+0.3
2,281,989	-		GFF2250	0.52	+1.0
2,282,015	+		GFF2250	0.57	-0.6
2,282,026	+		GFF2250	0.60	+0.9
2,282,034	-		GFF2250	0.61	-2.0
2,282,038	-		GFF2250	0.62	-1.5
2,282,038	-		GFF2250	0.62	+0.8
2,282,069	+		GFF2250	0.69	+0.5
2,282,077	-		GFF2250	0.70	-1.0
2,282,095	+		GFF2250	0.74	-2.0
2,282,095	+		GFF2250	0.74	-0.2
2,282,103	-		GFF2250	0.76	-2.1
2,282,103	-		GFF2250	0.76	-1.0
2,282,103	-		GFF2250	0.76	-1.2
2,282,103	-		GFF2250	0.76	-2.0
2,282,123	-		GFF2250	0.80	-0.1
2,282,154	+		GFF2250	0.87	+0.2
2,282,157	-		GFF2250	0.87	-1.3
2,282,157	-		GFF2250	0.87	+0.1
2,282,160	-		GFF2250	0.88	-0.6
2,282,191	+				+0.9
2,282,191	+				+0.5
2,282,207	+				-1.8
2,282,230	-				+0.8
2,282,231	+				+1.4
2,282,239	+				+0.8
2,282,247	-				-0.3
2,282,251	+				+0.9
2,282,252	-				-1.2
2,282,252	-				-0.8
2,282,339	+				+0.4
2,282,356	-				-2.6
2,282,400	-		GFF2251	0.28	-2.0
2,282,429	-		GFF2251	0.41	+0.2
2,282,429	-		GFF2251	0.41	-0.6
2,282,429	-		GFF2251	0.41	-2.6
2,282,429	-		GFF2251	0.41	-1.0
2,282,453	-		GFF2251	0.52	-1.7
2,282,490	+		GFF2251	0.68	-0.4
2,282,490	+		GFF2251	0.68	+0.1
2,282,490	+		GFF2251	0.68	-0.0
2,282,490	+		GFF2251	0.68	-2.0
2,282,498	-		GFF2251	0.72	-1.6
2,282,498	-		GFF2251	0.72	-1.0
2,282,500	+		GFF2251	0.73	+1.0
2,282,500	+		GFF2251	0.73	-0.6
2,282,503	-		GFF2251	0.74	-1.5
2,282,510	+		GFF2251	0.77	-1.5
2,282,518	-		GFF2251	0.81	+0.4
2,282,531	+		GFF2251	0.87	-0.5
2,282,539	-				-0.3
2,282,539	-				+0.4
2,282,539	-				+0.6
2,282,539	-				+1.0
2,282,558	-				-0.1
2,282,568	+				+0.1
2,282,568	+				+0.2
2,282,575	+				-0.4
2,282,618	-				-0.3
2,282,627	+				-0.6
2,282,657	+				-0.2
2,282,683	+				+1.1
2,282,692	+				+0.2
2,282,693	-				+0.9
2,282,693	-				+0.1
2,282,700	-				-0.4
2,282,726	-		GFF2252	0.15	-1.7
2,282,726	-		GFF2252	0.15	-0.0
2,282,758	+		GFF2252	0.35	+0.4
2,282,758	+		GFF2252	0.35	-0.5
2,282,758	+		GFF2252	0.35	-1.4
2,282,758	+		GFF2252	0.35	-1.0
2,282,766	-		GFF2252	0.40	+0.1
2,282,766	-		GFF2252	0.40	-0.2
2,282,785	+		GFF2252	0.52	-1.0
2,282,816	-		GFF2252	0.72	+0.5
2,282,829	-		GFF2252	0.80	-1.5
2,282,843	+		GFF2252	0.89	-0.6
2,282,855	+				-1.6
2,282,855	+				+1.2
2,282,855	+				-0.4
2,282,855	+				-1.3
2,282,863	-				-0.1
2,282,863	-				-0.1
2,282,863	-				+0.7
2,282,894	-				+0.3
2,282,919	+				+0.1
2,282,919	+				+0.1
2,282,927	-				-0.2
2,282,930	-				-0.3
2,282,930	-				+0.1
2,282,942	+				+1.5
2,282,971	+				-1.2
2,282,978	+				-0.0
2,282,979	+				+0.9
2,282,987	-				-2.6
2,282,987	-				+0.2
2,283,007	+				-0.7
2,283,007	+				-0.5
2,283,015	-				+0.2
2,283,018	+				+0.7
2,283,021	-				-1.7
2,283,021	-				-1.2
2,283,023	+				-1.5
2,283,023	+				-1.5
2,283,031	-				-0.4
2,283,031	-				-0.3
2,283,031	-				-2.1
2,283,033	+				-1.0
2,283,033	+				+1.1
2,283,033	+				-0.4
2,283,033	+				-2.0
2,283,040	+				+0.1
2,283,048	-				+1.9
2,283,048	-				-2.1
2,283,064	+				-0.8
2,283,088	+				-0.6
2,283,096	-				-1.0
2,283,096	-				-0.8
2,283,096	-				+1.3
2,283,096	-				-1.1
2,283,140	-				+0.2
2,283,193	+				-2.4
2,283,199	-				-1.2
2,283,203	-				-2.3
2,283,226	+		GFF2253	0.16	-1.2
2,283,234	-		GFF2253	0.18	+0.0
2,283,237	+		GFF2253	0.19	-1.7
2,283,285	+		GFF2253	0.32	+1.2
2,283,314	-		GFF2253	0.40	-1.7
2,283,314	-		GFF2253	0.40	+0.4
2,283,315	+		GFF2253	0.40	-0.9
2,283,316	+		GFF2253	0.40	+0.4
2,283,316	+		GFF2253	0.40	+0.7
2,283,316	+		GFF2253	0.40	-0.9
2,283,324	-		GFF2253	0.42	-0.9
2,283,324	-		GFF2253	0.42	+0.4
2,283,326	+		GFF2253	0.43	+0.7
2,283,326	+		GFF2253	0.43	-2.3
2,283,326	+		GFF2253	0.43	+0.3
2,283,326	+		GFF2253	0.43	+0.4
2,283,326	+		GFF2253	0.43	+0.5
2,283,326	+		GFF2253	0.43	+0.2
2,283,326	+		GFF2253	0.43	+0.1
2,283,326	+		GFF2253	0.43	-0.6
2,283,326	+		GFF2253	0.43	-0.6
2,283,326	+		GFF2253	0.43	-1.3
2,283,326	+		GFF2253	0.43	-2.0
2,283,326	+		GFF2253	0.43	-0.3
2,283,326	+		GFF2253	0.43	-0.2
2,283,326	+		GFF2253	0.43	+0.2
2,283,326	+		GFF2253	0.43	-0.1
2,283,326	+		GFF2253	0.43	+0.3
2,283,326	+		GFF2253	0.43	-1.9
2,283,326	+		GFF2253	0.43	-1.2
2,283,326	+		GFF2253	0.43	-2.0
2,283,326	+		GFF2253	0.43	-1.7
2,283,326	+		GFF2253	0.43	+0.1
2,283,326	+		GFF2253	0.43	-0.3
2,283,326	+		GFF2253	0.43	-1.1
2,283,326	+		GFF2253	0.43	+0.0
2,283,326	+		GFF2253	0.43	-3.3
2,283,326	+		GFF2253	0.43	-1.5
2,283,326	+		GFF2253	0.43	-0.8
2,283,326	+		GFF2253	0.43	-2.5
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	+0.5
2,283,326	+		GFF2253	0.43	-0.9
2,283,326	+		GFF2253	0.43	-0.0
2,283,326	+		GFF2253	0.43	-0.2
2,283,326	+		GFF2253	0.43	-0.0
2,283,326	+		GFF2253	0.43	-1.0
2,283,326	+		GFF2253	0.43	+0.9
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	-1.7
2,283,334	-		GFF2253	0.45	+0.9
2,283,334	-		GFF2253	0.45	-0.8
2,283,334	-		GFF2253	0.45	-0.5
2,283,334	-		GFF2253	0.45	-0.1
2,283,334	-		GFF2253	0.45	+0.3
2,283,334	-		GFF2253	0.45	-0.3
2,283,334	-		GFF2253	0.45	-0.6
2,283,334	-		GFF2253	0.45	-0.8
2,283,334	-		GFF2253	0.45	-1.4
2,283,334	-		GFF2253	0.45	+0.1
2,283,334	-		GFF2253	0.45	-1.8
2,283,334	-		GFF2253	0.45	-0.5
2,283,334	-		GFF2253	0.45	-0.8
2,283,334	-		GFF2253	0.45	-2.3
2,283,334	-		GFF2253	0.45	+0.3
2,283,334	-		GFF2253	0.45	+0.4
2,283,334	-		GFF2253	0.45	-0.2
2,283,334	-		GFF2253	0.45	+0.7
2,283,334	-		GFF2253	0.45	-0.3
2,283,334	-		GFF2253	0.45	-0.2
2,283,334	-		GFF2253	0.45	-0.4
2,283,334	-		GFF2253	0.45	-0.9
2,283,334	-		GFF2253	0.45	-0.4
2,283,334	-		GFF2253	0.45	-1.4
2,283,339	-		GFF2253	0.46	+1.3
2,283,341	+		GFF2253	0.47	-1.0
2,283,341	+		GFF2253	0.47	+0.2
2,283,341	+		GFF2253	0.47	+0.6
2,283,349	-		GFF2253	0.49	-1.4
2,283,349	-		GFF2253	0.49	+1.4
2,283,363	-		GFF2253	0.53	-2.9
2,283,410	+		GFF2253	0.66	-0.2
2,283,410	-		GFF2253	0.66	-0.5
2,283,410	-		GFF2253	0.66	-1.2
2,283,419	+		GFF2253	0.68	-2.0
2,283,424	+		GFF2253	0.69	-0.1
2,283,432	-		GFF2253	0.72	-2.0
2,283,434	+		GFF2253	0.72	-0.1
2,283,437	-		GFF2253	0.73	+0.3
2,283,462	+		GFF2253	0.80	-0.2
2,283,488	+		GFF2253	0.87	-0.3
2,283,488	+		GFF2253	0.87	-2.0
2,283,488	+		GFF2253	0.87	+0.7
2,283,488	-		GFF2253	0.87	-0.3
2,283,496	-		GFF2253	0.89	+0.6
2,283,496	-		GFF2253	0.89	+0.1
2,283,497	-		GFF2253	0.89	+0.5
2,283,558	-				-0.4