Strain Fitness in Sphingobium sp. HT1-2 around GFF2249

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,278,616	+		GFF2248	0.77	-1.1
2,278,617	-		GFF2248	0.77	-0.4
2,278,624	-		GFF2248	0.77	-0.4
2,278,626	+		GFF2248	0.77	-0.2
2,278,626	+		GFF2248	0.77	-0.2
2,278,626	+		GFF2248	0.77	-1.9
2,278,634	-		GFF2248	0.77	-0.7
2,278,634	-		GFF2248	0.77	+0.1
2,278,634	-		GFF2248	0.77	-1.1
2,278,634	-		GFF2248	0.77	-1.7
2,278,634	-		GFF2248	0.77	-1.4
2,278,636	+		GFF2248	0.77	-0.8
2,278,640	-		GFF2248	0.77	-1.2
2,278,649	-		GFF2248	0.77	-0.4
2,278,657	-		GFF2248	0.78	-1.8
2,278,658	+		GFF2248	0.78	-0.2
2,278,673	+		GFF2248	0.78	+0.5
2,278,678	+		GFF2248	0.78	-0.1
2,278,720	-		GFF2248	0.79	-1.1
2,278,727	+		GFF2248	0.79	-0.6
2,278,727	+		GFF2248	0.79	-1.3
2,278,732	+		GFF2248	0.79	-1.4
2,278,732	+		GFF2248	0.79	+0.2
2,278,732	+		GFF2248	0.79	+0.2
2,278,732	+		GFF2248	0.79	-1.2
2,278,732	+		GFF2248	0.79	+0.3
2,278,732	+		GFF2248	0.79	-0.6
2,278,732	+		GFF2248	0.79	-1.5
2,278,732	+		GFF2248	0.79	-0.2
2,278,732	+		GFF2248	0.79	+0.7
2,278,732	+		GFF2248	0.79	-1.7
2,278,740	-		GFF2248	0.80	+0.1
2,278,740	-		GFF2248	0.80	-0.6
2,278,740	-		GFF2248	0.80	-0.2
2,278,740	-		GFF2248	0.80	-0.4
2,278,740	-		GFF2248	0.80	-0.1
2,278,740	-		GFF2248	0.80	+0.5
2,278,742	+		GFF2248	0.80	+0.6
2,278,747	-		GFF2248	0.80	+0.5
2,278,749	+		GFF2248	0.80	-0.6
2,278,749	+		GFF2248	0.80	-1.2
2,278,752	-		GFF2248	0.80	-1.9
2,278,771	-		GFF2248	0.80	+0.1
2,278,804	+		GFF2248	0.81	+1.4
2,278,804	+		GFF2248	0.81	+0.4
2,278,817	-		GFF2248	0.81	-0.2
2,278,884	+		GFF2248	0.83	-1.2
2,278,928	-		GFF2248	0.84	+0.6
2,278,928	-		GFF2248	0.84	-0.2
2,278,928	-		GFF2248	0.84	+0.6
2,278,928	-		GFF2248	0.84	-0.6
2,278,936	-		GFF2248	0.84	-1.0
2,278,945	-		GFF2248	0.84	-1.4
2,278,973	+		GFF2248	0.85	-1.4
2,278,977	+		GFF2248	0.85	-0.5
2,278,978	+		GFF2248	0.85	+0.0
2,278,978	+		GFF2248	0.85	+0.3
2,278,985	-		GFF2248	0.85	+0.5
2,278,986	-		GFF2248	0.85	-1.8
2,279,041	+		GFF2248	0.87	+0.2
2,279,041	+		GFF2248	0.87	-0.6
2,279,051	+		GFF2248	0.87	+0.0
2,279,059	-		GFF2248	0.87	-0.8
2,279,061	-		GFF2248	0.87	-0.8
2,279,068	-		GFF2248	0.87	-0.8
2,279,069	+		GFF2248	0.87	-1.5
2,279,077	-		GFF2248	0.88	-1.9
2,279,107	-		GFF2248	0.88	-1.6
2,279,137	+		GFF2248	0.89	+0.3
2,279,145	-		GFF2248	0.89	+0.5
2,279,159	-		GFF2248	0.90	-0.9
2,279,174	+		GFF2248	0.90	-0.1
2,279,180	+				-1.7
2,279,183	-				-2.5
2,279,188	-				-0.0
2,279,202	-				-0.8
2,279,221	-				+0.4
2,279,236	-				+0.8
2,279,236	-				-0.7
2,279,251	+				+0.8
2,279,255	-				+1.0
2,279,259	-				-1.1
2,279,259	-				+1.2
2,279,266	+				+0.9
2,279,266	+				+0.0
2,279,266	+				-1.4
2,279,274	-				-2.1
2,279,274	-				+1.4
2,279,274	-				-0.1
2,279,278	-				-0.6
2,279,306	+				-2.0
2,279,311	+				-0.0
2,279,312	+				-0.8
2,279,316	+				-1.4
2,279,316	+				-2.3
2,279,316	+				-0.3
2,279,316	+				-0.7
2,279,316	+				-1.0
2,279,320	-				-0.7
2,279,321	+				-1.6
2,279,324	-				-0.4
2,279,324	-				-1.7
2,279,324	-				+0.1
2,279,324	-				+0.2
2,279,324	-				-0.3
2,279,326	+				-2.0
2,279,329	-				-0.3
2,279,334	-				+0.8
2,279,339	-				+0.9
2,279,339	-				+0.0
2,279,362	-				-0.3
2,279,377	-				-0.4
2,279,377	-				+0.1
2,279,384	+				-1.6
2,279,438	-				+0.6
2,279,438	-				+1.1
2,279,455	-				-0.6
2,279,460	-				-1.6
2,279,604	+				-0.9
2,279,607	-				-0.2
2,279,633	+				+0.7
2,279,661	-				+0.5
2,279,685	-				+1.0
2,279,687	+				-1.0
2,279,690	-				-0.2
2,279,695	-				-2.7
2,279,697	+				-0.2
2,279,697	+				+0.3
2,279,697	+				-0.6
2,279,697	+				+0.1
2,279,704	-				-0.3
2,279,706	-				+0.5
2,279,712	+				-0.3
2,279,713	+				+0.1
2,279,717	+				-1.7
2,279,717	+				-1.0
2,279,730	-				-1.2
2,279,735	+				+0.5
2,279,743	-				+0.1
2,279,750	+				-0.4
2,279,766	+				-0.5
2,279,774	-				-0.8
2,279,856	+		GFF2249	0.14	-0.2
2,279,875	+		GFF2249	0.15	-0.1
2,279,902	+		GFF2249	0.16	-0.1
2,279,910	-		GFF2249	0.16	-0.3
2,279,932	+		GFF2249	0.18	-1.9
2,279,932	+		GFF2249	0.18	+0.3
2,279,943	-		GFF2249	0.18	-1.3
2,279,978	+		GFF2249	0.20	-1.6
2,279,978	+		GFF2249	0.20	-1.3
2,279,981	-		GFF2249	0.20	+0.5
2,279,983	+		GFF2249	0.20	-0.8
2,279,986	-		GFF2249	0.20	+0.2
2,279,990	+		GFF2249	0.21	-1.1
2,280,001	-		GFF2249	0.21	-0.3
2,280,029	+		GFF2249	0.23	-1.3
2,280,048	+		GFF2249	0.24	-1.2
2,280,056	+		GFF2249	0.24	-2.1
2,280,056	-		GFF2249	0.24	-0.5
2,280,066	+		GFF2249	0.25	+0.4
2,280,074	-		GFF2249	0.25	-1.7
2,280,080	-		GFF2249	0.25	+0.8
2,280,081	-		GFF2249	0.25	-0.2
2,280,092	+		GFF2249	0.26	+1.7
2,280,092	+		GFF2249	0.26	-1.0
2,280,097	+		GFF2249	0.26	-1.6
2,280,100	-		GFF2249	0.26	-0.9
2,280,100	-		GFF2249	0.26	+0.3
2,280,100	-		GFF2249	0.26	-3.3
2,280,105	-		GFF2249	0.27	-1.8
2,280,105	-		GFF2249	0.27	-0.4
2,280,116	+		GFF2249	0.27	+0.2
2,280,132	-		GFF2249	0.28	-0.7
2,280,133	+		GFF2249	0.28	-1.0
2,280,136	-		GFF2249	0.28	-2.2
2,280,141	-		GFF2249	0.29	-0.1
2,280,153	+		GFF2249	0.29	-0.4
2,280,169	-		GFF2249	0.30	+1.2
2,280,171	+		GFF2249	0.30	-0.5
2,280,176	+		GFF2249	0.30	-0.2
2,280,179	-		GFF2249	0.31	-0.5
2,280,179	-		GFF2249	0.31	+0.7
2,280,184	-		GFF2249	0.31	-2.5
2,280,184	-		GFF2249	0.31	-1.2
2,280,184	-		GFF2249	0.31	-0.3
2,280,184	-		GFF2249	0.31	-0.1
2,280,196	+		GFF2249	0.31	-1.0
2,280,243	+		GFF2249	0.34	+1.7
2,280,245	+		GFF2249	0.34	+0.9
2,280,245	+		GFF2249	0.34	-0.7
2,280,245	+		GFF2249	0.34	-2.3
2,280,253	-		GFF2249	0.34	-0.5
2,280,253	-		GFF2249	0.34	-1.1
2,280,273	-		GFF2249	0.35	-1.0
2,280,273	-		GFF2249	0.35	-0.4
2,280,284	+		GFF2249	0.36	-0.4
2,280,284	+		GFF2249	0.36	+1.1
2,280,294	-		GFF2249	0.37	-1.2
2,280,307	-		GFF2249	0.37	+1.1
2,280,307	-		GFF2249	0.37	+1.4
2,280,319	+		GFF2249	0.38	+0.9
2,280,319	+		GFF2249	0.38	-2.8
2,280,319	+		GFF2249	0.38	+0.1
2,280,325	-		GFF2249	0.38	+0.6
2,280,325	-		GFF2249	0.38	-0.3
2,280,327	-		GFF2249	0.38	-1.3
2,280,327	-		GFF2249	0.38	-0.2
2,280,332	+		GFF2249	0.39	-1.4
2,280,332	+		GFF2249	0.39	+0.8
2,280,340	-		GFF2249	0.39	+1.5
2,280,342	-		GFF2249	0.39	-0.5
2,280,365	+		GFF2249	0.40	-2.1
2,280,365	+		GFF2249	0.40	-0.6
2,280,368	-		GFF2249	0.40	-2.0
2,280,373	-		GFF2249	0.41	-1.0
2,280,375	+		GFF2249	0.41	-2.8
2,280,375	+		GFF2249	0.41	-0.5
2,280,375	+		GFF2249	0.41	-1.2
2,280,375	+		GFF2249	0.41	+0.4
2,280,375	+		GFF2249	0.41	-0.1
2,280,375	+		GFF2249	0.41	+0.4
2,280,375	+		GFF2249	0.41	-1.0
2,280,380	+		GFF2249	0.41	-0.4
2,280,380	+		GFF2249	0.41	-0.4
2,280,380	+		GFF2249	0.41	-0.2
2,280,388	-		GFF2249	0.42	-3.3
2,280,405	-		GFF2249	0.42	+0.6
2,280,415	+		GFF2249	0.43	-0.5
2,280,420	+		GFF2249	0.43	-0.1
2,280,423	-		GFF2249	0.43	+0.6
2,280,425	+		GFF2249	0.43	-2.3
2,280,428	-		GFF2249	0.44	+1.1
2,280,434	+		GFF2249	0.44	-2.0
2,280,434	+		GFF2249	0.44	-0.8
2,280,434	+		GFF2249	0.44	+0.6
2,280,442	-		GFF2249	0.44	-1.0
2,280,442	-		GFF2249	0.44	+0.2
2,280,442	-		GFF2249	0.44	+0.4
2,280,442	-		GFF2249	0.44	+0.0
2,280,444	+		GFF2249	0.44	-0.4
2,280,461	+		GFF2249	0.45	-1.2
2,280,461	+		GFF2249	0.45	+0.2
2,280,461	+		GFF2249	0.45	+0.9
2,280,469	-		GFF2249	0.46	-0.5
2,280,469	-		GFF2249	0.46	+0.7
2,280,478	+		GFF2249	0.46	-2.1
2,280,478	+		GFF2249	0.46	-0.9
2,280,502	+		GFF2249	0.48	+0.4
2,280,502	+		GFF2249	0.48	-2.0
2,280,510	-		GFF2249	0.48	+0.9
2,280,510	-		GFF2249	0.48	-0.1
2,280,510	-		GFF2249	0.48	-1.1
2,280,512	+		GFF2249	0.48	-1.5
2,280,512	+		GFF2249	0.48	+0.7
2,280,522	+		GFF2249	0.49	-2.2
2,280,522	+		GFF2249	0.49	+0.3
2,280,522	+		GFF2249	0.49	+0.2
2,280,530	-		GFF2249	0.49	+0.3
2,280,530	-		GFF2249	0.49	-0.7
2,280,530	-		GFF2249	0.49	-0.2
2,280,535	+		GFF2249	0.49	-1.1
2,280,535	+		GFF2249	0.49	-0.7
2,280,543	-		GFF2249	0.50	-0.4
2,280,543	-		GFF2249	0.50	-0.5
2,280,543	-		GFF2249	0.50	-0.7
2,280,543	-		GFF2249	0.50	-2.1
2,280,564	+		GFF2249	0.51	-2.0
2,280,566	-		GFF2249	0.51	-0.2
2,280,571	+		GFF2249	0.51	+1.4
2,280,572	-		GFF2249	0.51	+0.4
2,280,586	+		GFF2249	0.52	+0.6
2,280,612	+		GFF2249	0.53	-1.4
2,280,613	+		GFF2249	0.53	+0.8
2,280,621	-		GFF2249	0.54	-1.3
2,280,626	+		GFF2249	0.54	-1.1
2,280,626	+		GFF2249	0.54	-0.2
2,280,658	-		GFF2249	0.56	+0.1
2,280,665	-		GFF2249	0.56	+0.6
2,280,672	+		GFF2249	0.56	-0.3
2,280,680	-		GFF2249	0.57	-1.1
2,280,680	-		GFF2249	0.57	+0.1
2,280,695	+		GFF2249	0.58	-0.4
2,280,737	-		GFF2249	0.60	+0.8
2,280,740	+		GFF2249	0.60	+1.0
2,280,740	+		GFF2249	0.60	-1.9
2,280,743	-		GFF2249	0.60	-2.5
2,280,743	-		GFF2249	0.60	+0.2
2,280,745	+		GFF2249	0.60	-0.9
2,280,745	+		GFF2249	0.60	+0.8
2,280,745	+		GFF2249	0.60	-1.3
2,280,753	-		GFF2249	0.61	+0.4
2,280,753	-		GFF2249	0.61	+0.5
2,280,753	-		GFF2249	0.61	+0.5
2,280,781	-		GFF2249	0.62	-0.1
2,280,811	-		GFF2249	0.64	+1.0
2,280,844	-		GFF2249	0.66	-1.3
2,280,854	+		GFF2249	0.66	-1.0
2,280,863	+		GFF2249	0.67	-0.3
2,280,863	+		GFF2249	0.67	-0.4
2,280,871	-		GFF2249	0.67	+0.7
2,280,871	-		GFF2249	0.67	+0.7
2,280,881	-		GFF2249	0.67	+0.7
2,280,881	-		GFF2249	0.67	-1.5
2,280,881	-		GFF2249	0.67	+0.3
2,280,881	-		GFF2249	0.67	-0.4
2,280,881	-		GFF2249	0.67	-0.7
2,280,899	+		GFF2249	0.68	-0.1
2,280,901	+		GFF2249	0.69	-1.1
2,280,915	+		GFF2249	0.69	+1.2
2,280,916	+		GFF2249	0.69	-0.4
2,280,940	+		GFF2249	0.71	-1.2
2,280,940	+		GFF2249	0.71	+0.3
2,280,940	+		GFF2249	0.71	+0.9
2,280,948	-		GFF2249	0.71	-0.5
2,280,985	+		GFF2249	0.73	-1.0
2,280,985	+		GFF2249	0.73	-0.3
2,280,992	+		GFF2249	0.73	-0.8
2,280,993	-		GFF2249	0.73	-1.5
2,281,000	-		GFF2249	0.74	+0.3
2,281,000	-		GFF2249	0.74	-2.6
2,281,003	+		GFF2249	0.74	-1.5
2,281,011	-		GFF2249	0.74	+0.3
2,281,030	+		GFF2249	0.75	+0.7
2,281,032	+		GFF2249	0.75	-1.7
2,281,038	-		GFF2249	0.76	+1.2
2,281,039	+		GFF2249	0.76	-1.6
2,281,085	-		GFF2249	0.78	-1.4
2,281,116	-		GFF2249	0.80	+0.8
2,281,137	-		GFF2249	0.81	+0.4
2,281,165	+		GFF2249	0.82	+0.4
2,281,168	+		GFF2249	0.83	-0.6
2,281,171	+		GFF2249	0.83	-1.4
2,281,171	+		GFF2249	0.83	-0.7
2,281,173	+		GFF2249	0.83	-0.5
2,281,174	-		GFF2249	0.83	-0.6
2,281,178	+		GFF2249	0.83	-0.5
2,281,181	-		GFF2249	0.83	-0.5
2,281,199	+		GFF2249	0.84	-0.3
2,281,199	+		GFF2249	0.84	-1.5
2,281,199	+		GFF2249	0.84	+0.9
2,281,199	+		GFF2249	0.84	+0.0
2,281,199	+		GFF2249	0.84	-0.1
2,281,207	-		GFF2249	0.85	-1.4
2,281,207	-		GFF2249	0.85	-0.1
2,281,207	-		GFF2249	0.85	-2.2
2,281,207	-		GFF2249	0.85	-1.3
2,281,207	-		GFF2249	0.85	+0.2
2,281,213	+		GFF2249	0.85	+1.0
2,281,213	-		GFF2249	0.85	-0.6
2,281,220	+		GFF2249	0.85	+1.0
2,281,225	+		GFF2249	0.86	-0.8
2,281,230	+		GFF2249	0.86	+0.1
2,281,230	+		GFF2249	0.86	-0.2
2,281,230	+		GFF2249	0.86	-0.4
2,281,230	+		GFF2249	0.86	-0.8
2,281,230	+		GFF2249	0.86	-0.1
2,281,230	+		GFF2249	0.86	+0.2
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2,281,338	+				-1.5
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2,282,498	-		GFF2251	0.72	-1.0