Strain Fitness in Sphingobium sp. HT1-2 around GFF2211

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,224,857	-		GFF2210	0.23	-0.7
2,224,870	+		GFF2210	0.24	+0.8
2,224,870	+		GFF2210	0.24	-0.4
2,224,875	+		GFF2210	0.24	+0.4
2,224,875	+		GFF2210	0.24	+0.3
2,224,883	-		GFF2210	0.25	-0.6
2,224,883	-		GFF2210	0.25	-0.6
2,224,883	-		GFF2210	0.25	-0.1
2,224,885	-		GFF2210	0.25	+1.4
2,224,885	-		GFF2210	0.25	+0.4
2,224,888	-		GFF2210	0.25	+0.2
2,224,895	+		GFF2210	0.25	-1.0
2,224,907	+		GFF2210	0.26	-1.6
2,224,912	+		GFF2210	0.27	-0.6
2,224,912	+		GFF2210	0.27	+0.4
2,224,912	+		GFF2210	0.27	-1.7
2,224,914	-		GFF2210	0.27	+0.4
2,224,920	-		GFF2210	0.27	+0.3
2,224,920	-		GFF2210	0.27	-0.2
2,224,920	-		GFF2210	0.27	+1.2
2,224,929	+		GFF2210	0.28	+0.3
2,224,945	-		GFF2210	0.29	+1.1
2,224,945	-		GFF2210	0.29	-2.3
2,224,945	-		GFF2210	0.29	-0.2
2,224,945	-		GFF2210	0.29	-0.6
2,224,945	-		GFF2210	0.29	-0.2
2,224,952	-		GFF2210	0.30	-0.7
2,224,953	+		GFF2210	0.30	+1.9
2,224,954	+		GFF2210	0.30	-0.0
2,224,998	+		GFF2210	0.34	-0.1
2,224,998	+		GFF2210	0.34	-0.5
2,224,998	+		GFF2210	0.34	-0.4
2,225,003	+		GFF2210	0.34	-0.8
2,225,006	-		GFF2210	0.34	-1.0
2,225,006	-		GFF2210	0.34	-1.0
2,225,006	-		GFF2210	0.34	-0.5
2,225,006	-		GFF2210	0.34	-0.7
2,225,022	-		GFF2210	0.35	-1.4
2,225,034	+		GFF2210	0.36	-1.7
2,225,034	+		GFF2210	0.36	+0.1
2,225,034	+		GFF2210	0.36	-1.6
2,225,040	+		GFF2210	0.37	-0.9
2,225,042	-		GFF2210	0.37	+0.4
2,225,042	-		GFF2210	0.37	-2.1
2,225,042	-		GFF2210	0.37	-1.5
2,225,044	+		GFF2210	0.37	-0.5
2,225,048	-		GFF2210	0.37	-1.5
2,225,052	-		GFF2210	0.38	-2.1
2,225,053	-		GFF2210	0.38	+0.4
2,225,058	-		GFF2210	0.38	-1.2
2,225,096	+		GFF2210	0.41	-1.6
2,225,101	+		GFF2210	0.42	-1.2
2,225,103	+		GFF2210	0.42	+2.1
2,225,109	-		GFF2210	0.42	+0.0
2,225,130	-		GFF2210	0.44	+1.0
2,225,132	+		GFF2210	0.44	+0.8
2,225,136	-		GFF2210	0.44	-2.5
2,225,177	+		GFF2210	0.48	+1.9
2,225,177	+		GFF2210	0.48	+0.4
2,225,178	+		GFF2210	0.48	+0.8
2,225,178	+		GFF2210	0.48	+1.0
2,225,178	+		GFF2210	0.48	-1.9
2,225,185	-		GFF2210	0.48	-0.0
2,225,185	-		GFF2210	0.48	-0.3
2,225,186	-		GFF2210	0.48	-0.6
2,225,187	+		GFF2210	0.48	-0.5
2,225,196	+		GFF2210	0.49	-0.4
2,225,204	+		GFF2210	0.50	+0.8
2,225,207	+		GFF2210	0.50	-2.0
2,225,207	+		GFF2210	0.50	-0.1
2,225,212	-		GFF2210	0.50	-0.1
2,225,212	-		GFF2210	0.50	-1.2
2,225,223	+		GFF2210	0.51	-1.4
2,225,223	-		GFF2210	0.51	+0.4
2,225,224	-		GFF2210	0.51	-0.8
2,225,231	-		GFF2210	0.52	-1.2
2,225,233	+		GFF2210	0.52	-2.2
2,225,238	+		GFF2210	0.52	-0.1
2,225,246	-		GFF2210	0.53	+1.5
2,225,246	-		GFF2210	0.53	-1.1
2,225,246	-		GFF2210	0.53	-1.5
2,225,246	-		GFF2210	0.53	-1.2
2,225,267	+		GFF2210	0.55	+1.8
2,225,268	+		GFF2210	0.55	+0.6
2,225,273	+		GFF2210	0.55	-1.6
2,225,276	-		GFF2210	0.55	-0.8
2,225,276	-		GFF2210	0.55	-0.6
2,225,276	-		GFF2210	0.55	-1.0
2,225,299	+		GFF2210	0.57	+0.7
2,225,299	+		GFF2210	0.57	-2.0
2,225,306	+		GFF2210	0.58	-0.3
2,225,307	-		GFF2210	0.58	+0.1
2,225,307	-		GFF2210	0.58	+0.6
2,225,307	-		GFF2210	0.58	-0.0
2,225,307	-		GFF2210	0.58	+1.3
2,225,307	-		GFF2210	0.58	+0.5
2,225,307	-		GFF2210	0.58	+0.1
2,225,309	+		GFF2210	0.58	+0.2
2,225,309	+		GFF2210	0.58	-0.1
2,225,314	-		GFF2210	0.58	-1.5
2,225,314	-		GFF2210	0.58	+1.0
2,225,326	+		GFF2210	0.59	-2.0
2,225,373	+		GFF2210	0.63	+0.2
2,225,373	+		GFF2210	0.63	-0.7
2,225,373	+		GFF2210	0.63	+0.1
2,225,373	+		GFF2210	0.63	-0.2
2,225,373	+		GFF2210	0.63	-0.2
2,225,373	-		GFF2210	0.63	-0.8
2,225,373	-		GFF2210	0.63	-1.4
2,225,373	-		GFF2210	0.63	+0.6
2,225,373	-		GFF2210	0.63	-0.6
2,225,373	-		GFF2210	0.63	-2.5
2,225,373	-		GFF2210	0.63	-0.8
2,225,375	+		GFF2210	0.63	-0.6
2,225,375	+		GFF2210	0.63	+0.5
2,225,375	+		GFF2210	0.63	-1.7
2,225,375	+		GFF2210	0.63	-1.4
2,225,375	+		GFF2210	0.63	+0.9
2,225,381	-		GFF2210	0.64	-0.2
2,225,381	-		GFF2210	0.64	-2.6
2,225,383	-		GFF2210	0.64	+0.1
2,225,383	-		GFF2210	0.64	-0.0
2,225,383	-		GFF2210	0.64	+0.4
2,225,390	+		GFF2210	0.64	+1.1
2,225,400	+		GFF2210	0.65	-1.6
2,225,408	+		GFF2210	0.66	+0.6
2,225,416	-		GFF2210	0.66	-1.4
2,225,416	-		GFF2210	0.66	-2.5
2,225,432	+		GFF2210	0.68	+0.2
2,225,433	-		GFF2210	0.68	+0.2
2,225,433	-		GFF2210	0.68	+0.3
2,225,433	-		GFF2210	0.68	-0.4
2,225,434	+		GFF2210	0.68	-0.2
2,225,442	-		GFF2210	0.68	+0.8
2,225,488	-		GFF2210	0.72	+0.3
2,225,489	-		GFF2210	0.72	+0.5
2,225,489	-		GFF2210	0.72	-1.4
2,225,489	-		GFF2210	0.72	-0.9
2,225,498	-		GFF2210	0.73	-0.6
2,225,530	+		GFF2210	0.75	-0.6
2,225,530	+		GFF2210	0.75	+0.5
2,225,538	+		GFF2210	0.76	+0.2
2,225,538	+		GFF2210	0.76	-0.4
2,225,538	+		GFF2210	0.76	-1.0
2,225,538	+		GFF2210	0.76	-1.1
2,225,538	+		GFF2210	0.76	-0.2
2,225,538	-		GFF2210	0.76	+1.6
2,225,538	-		GFF2210	0.76	-0.4
2,225,540	+		GFF2210	0.76	-0.1
2,225,540	+		GFF2210	0.76	-2.0
2,225,540	+		GFF2210	0.76	+0.7
2,225,540	+		GFF2210	0.76	+1.5
2,225,540	+		GFF2210	0.76	+0.1
2,225,540	+		GFF2210	0.76	-0.4
2,225,540	+		GFF2210	0.76	+1.2
2,225,540	+		GFF2210	0.76	+1.1
2,225,540	+		GFF2210	0.76	-1.2
2,225,546	-		GFF2210	0.77	-0.9
2,225,546	-		GFF2210	0.77	+0.2
2,225,546	-		GFF2210	0.77	-0.5
2,225,546	-		GFF2210	0.77	-1.1
2,225,546	-		GFF2210	0.77	+0.8
2,225,546	-		GFF2210	0.77	+0.4
2,225,546	-		GFF2210	0.77	+0.1
2,225,548	-		GFF2210	0.77	-0.1
2,225,561	+		GFF2210	0.78	-1.4
2,225,566	+		GFF2210	0.78	-0.5
2,225,574	-		GFF2210	0.79	-0.8
2,225,582	+		GFF2210	0.79	-0.1
2,225,582	+		GFF2210	0.79	-1.2
2,225,582	+		GFF2210	0.79	-2.1
2,225,582	+		GFF2210	0.79	+0.4
2,225,582	+		GFF2210	0.79	-1.2
2,225,582	+		GFF2210	0.79	+1.2
2,225,590	-		GFF2210	0.80	+0.4
2,225,590	-		GFF2210	0.80	-0.3
2,225,590	-		GFF2210	0.80	+0.1
2,225,590	-		GFF2210	0.80	-1.1
2,225,590	-		GFF2210	0.80	-1.7
2,225,590	-		GFF2210	0.80	+0.1
2,225,590	-		GFF2210	0.80	-0.9
2,225,593	+		GFF2210	0.80	+0.5
2,225,593	+		GFF2210	0.80	-2.0
2,225,612	+		GFF2210	0.82	+0.1
2,225,612	+		GFF2210	0.82	-0.5
2,225,612	+		GFF2210	0.82	-1.6
2,225,620	-		GFF2210	0.82	-1.3
2,225,620	-		GFF2210	0.82	-0.1
2,225,620	-		GFF2210	0.82	-0.1
2,225,662	-		GFF2210	0.86	-1.5
2,225,664	+		GFF2210	0.86	-0.2
2,225,667	-		GFF2210	0.86	-0.5
2,225,672	-		GFF2210	0.86	-1.3
2,225,684	+		GFF2210	0.87	-0.3
2,225,684	+		GFF2210	0.87	+0.8
2,225,689	+		GFF2210	0.88	-0.1
2,225,689	+		GFF2210	0.88	+0.5
2,225,689	+		GFF2210	0.88	-1.1
2,225,689	+		GFF2210	0.88	+1.6
2,225,689	+		GFF2210	0.88	-0.6
2,225,692	-		GFF2210	0.88	-0.5
2,225,697	-		GFF2210	0.88	+0.4
2,225,697	-		GFF2210	0.88	-1.0
2,225,697	-		GFF2210	0.88	-1.0
2,225,697	-		GFF2210	0.88	-0.5
2,225,697	-		GFF2210	0.88	-1.4
2,225,703	-		GFF2210	0.89	-1.0
2,225,717	-				+0.3
2,225,738	+				-1.2
2,225,739	+				+0.8
2,225,745	+				-1.7
2,225,753	-				+0.2
2,225,781	+				-1.9
2,225,790	-				+0.3
2,225,840	-				-0.6
2,225,855	+				-0.6
2,225,855	+				+0.4
2,225,860	-				+0.4
2,225,860	-				-0.6
2,225,862	-				-1.4
2,225,863	-				-0.2
2,225,863	-				-0.7
2,225,863	-				+0.4
2,225,863	-				-0.4
2,225,870	-				+0.5
2,225,887	+				-1.3
2,225,887	+				-1.6
2,225,932	-				-0.1
2,225,991	+		GFF2211	0.13	-2.6
2,225,999	-		GFF2211	0.14	+0.6
2,225,999	-		GFF2211	0.14	-0.2
2,226,022	+		GFF2211	0.16	-0.1
2,226,030	-		GFF2211	0.16	-0.7
2,226,030	-		GFF2211	0.16	+0.8
2,226,030	-		GFF2211	0.16	+0.8
2,226,036	+		GFF2211	0.17	-0.6
2,226,065	-		GFF2211	0.20	-0.6
2,226,070	-		GFF2211	0.20	+0.4
2,226,083	+		GFF2211	0.21	+1.4
2,226,093	+		GFF2211	0.22	-1.7
2,226,093	-		GFF2211	0.22	-0.7
2,226,122	-		GFF2211	0.25	+1.0
2,226,144	-		GFF2211	0.27	-2.9
2,226,151	+		GFF2211	0.27	-1.4
2,226,151	+		GFF2211	0.27	-0.3
2,226,157	+		GFF2211	0.28	-1.1
2,226,159	-		GFF2211	0.28	-0.9
2,226,159	-		GFF2211	0.28	-1.7
2,226,159	-		GFF2211	0.28	+0.4
2,226,160	-		GFF2211	0.28	+0.4
2,226,162	+		GFF2211	0.28	+0.8
2,226,162	+		GFF2211	0.28	-2.2
2,226,162	+		GFF2211	0.28	+2.1
2,226,162	+		GFF2211	0.28	-0.2
2,226,177	-		GFF2211	0.30	+0.7
2,226,179	-		GFF2211	0.30	+0.0
2,226,192	+		GFF2211	0.31	-0.4
2,226,192	+		GFF2211	0.31	-1.2
2,226,192	+		GFF2211	0.31	-0.7
2,226,192	+		GFF2211	0.31	-0.2
2,226,197	+		GFF2211	0.31	-0.5
2,226,200	-		GFF2211	0.32	+0.8
2,226,200	-		GFF2211	0.32	+0.6
2,226,200	-		GFF2211	0.32	-0.1
2,226,200	-		GFF2211	0.32	-0.4
2,226,200	-		GFF2211	0.32	+0.2
2,226,200	-		GFF2211	0.32	+0.3
2,226,200	-		GFF2211	0.32	-0.9
2,226,204	+		GFF2211	0.32	-0.5
2,226,212	-		GFF2211	0.33	+1.8
2,226,214	-		GFF2211	0.33	-0.9
2,226,220	+		GFF2211	0.33	-1.6
2,226,223	-		GFF2211	0.34	+0.8
2,226,223	-		GFF2211	0.34	+0.2
2,226,231	-		GFF2211	0.34	-0.4
2,226,240	+		GFF2211	0.35	-0.3
2,226,250	+		GFF2211	0.36	-0.9
2,226,271	+		GFF2211	0.38	-2.0
2,226,271	+		GFF2211	0.38	-0.4
2,226,273	+		GFF2211	0.38	+0.5
2,226,279	-		GFF2211	0.39	+0.5
2,226,279	-		GFF2211	0.39	+0.0
2,226,305	+		GFF2211	0.41	-1.5
2,226,305	+		GFF2211	0.41	+0.4
2,226,313	-		GFF2211	0.42	-1.7
2,226,332	+		GFF2211	0.43	+0.3
2,226,332	+		GFF2211	0.43	-0.7
2,226,341	-		GFF2211	0.44	+0.4
2,226,350	+		GFF2211	0.45	-0.5
2,226,358	-		GFF2211	0.46	+0.8
2,226,383	+		GFF2211	0.48	-0.2
2,226,391	-		GFF2211	0.48	-0.7
2,226,400	-		GFF2211	0.49	-0.7
2,226,402	+		GFF2211	0.49	-0.8
2,226,426	-		GFF2211	0.52	+0.5
2,226,441	+		GFF2211	0.53	+0.3
2,226,447	-		GFF2211	0.53	+0.8
2,226,449	+		GFF2211	0.54	+1.7
2,226,449	+		GFF2211	0.54	-0.2
2,226,449	-		GFF2211	0.54	+0.3
2,226,451	+		GFF2211	0.54	+1.1
2,226,477	+		GFF2211	0.56	-1.7
2,226,530	+		GFF2211	0.61	-2.1
2,226,531	-		GFF2211	0.61	-1.2
2,226,531	-		GFF2211	0.61	-2.4
2,226,532	+		GFF2211	0.61	+1.5
2,226,532	+		GFF2211	0.61	-0.4
2,226,532	+		GFF2211	0.61	-0.0
2,226,532	+		GFF2211	0.61	+0.6
2,226,534	-		GFF2211	0.61	+0.0
2,226,540	-		GFF2211	0.62	+0.6
2,226,540	-		GFF2211	0.62	-1.4
2,226,555	-		GFF2211	0.63	+0.1
2,226,558	-		GFF2211	0.63	-0.4
2,226,571	+		GFF2211	0.64	-0.6
2,226,571	+		GFF2211	0.64	+0.7
2,226,571	+		GFF2211	0.64	+1.1
2,226,571	+		GFF2211	0.64	-0.3
2,226,571	+		GFF2211	0.64	-1.6
2,226,571	+		GFF2211	0.64	+0.4
2,226,571	+		GFF2211	0.64	-1.5
2,226,571	+		GFF2211	0.64	-2.4
2,226,571	+		GFF2211	0.64	-1.1
2,226,571	+		GFF2211	0.64	+0.1
2,226,571	+		GFF2211	0.64	-0.2
2,226,571	+		GFF2211	0.64	+0.6
2,226,571	+		GFF2211	0.64	-1.1
2,226,571	+		GFF2211	0.64	-0.6
2,226,574	-		GFF2211	0.65	+0.3
2,226,579	-		GFF2211	0.65	-0.6
2,226,579	-		GFF2211	0.65	+0.3
2,226,579	-		GFF2211	0.65	-1.2
2,226,579	-		GFF2211	0.65	-0.5
2,226,579	-		GFF2211	0.65	+0.5
2,226,579	-		GFF2211	0.65	-0.8
2,226,579	-		GFF2211	0.65	+0.9
2,226,579	-		GFF2211	0.65	-1.0
2,226,579	-		GFF2211	0.65	+0.5
2,226,586	+		GFF2211	0.66	-0.5
2,226,620	+		GFF2211	0.69	+0.4
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