Strain Fitness in Sphingobium sp. HT1-2 around GFF2207

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,222,231	-		GFF2203	0.89	+0.0
2,222,238	+		GFF2203	0.90	-1.5
2,222,241	-		GFF2203	0.90	+0.5
2,222,241	-		GFF2203	0.90	+0.8
2,222,241	-		GFF2203	0.90	-1.0
2,222,241	-		GFF2203	0.90	+0.5
2,222,241	-		GFF2203	0.90	+2.0
2,222,241	-		GFF2203	0.90	-0.7
2,222,241	-		GFF2203	0.90	-0.9
2,222,243	+		GFF2203	0.90	-1.2
2,222,243	+		GFF2203	0.90	+0.4
2,222,243	+		GFF2203	0.90	-1.3
2,222,243	+		GFF2203	0.90	+0.6
2,222,243	+		GFF2203	0.90	+0.8
2,222,246	-				-0.0
2,222,248	+				+0.1
2,222,251	-				+0.5
2,222,251	-				+1.5
2,222,251	-				-1.0
2,222,251	-				-0.0
2,222,251	-				+0.1
2,222,251	-				+0.3
2,222,251	-				-2.5
2,222,251	-				-1.0
2,222,251	-				-0.0
2,222,251	-				+0.0
2,222,251	-				-1.4
2,222,251	-				-0.9
2,222,251	-				+0.5
2,222,251	-				+1.2
2,222,251	-				-1.0
2,222,258	+				-0.5
2,222,258	+				+0.4
2,222,258	+				-0.9
2,222,260	+				+0.6
2,222,260	+				-1.2
2,222,266	-				+0.0
2,222,266	-				-1.5
2,222,268	-				-0.5
2,222,268	-				-0.7
2,222,268	-				-0.7
2,222,271	-				+0.3
2,222,331	+				-0.5
2,222,381	+				+0.9
2,222,384	-				-1.0
2,222,394	-				-0.3
2,222,402	+				-0.8
2,222,412	+				-0.3
2,222,443	-		GFF2204	0.10	+0.1
2,222,449	+		GFF2204	0.12	-0.5
2,222,449	+		GFF2204	0.12	+0.9
2,222,452	-		GFF2204	0.13	+0.4
2,222,454	+		GFF2204	0.13	-0.5
2,222,478	-		GFF2204	0.20	+0.8
2,222,488	-		GFF2204	0.23	+0.8
2,222,493	+		GFF2204	0.25	-0.1
2,222,493	+		GFF2204	0.25	-1.9
2,222,507	+		GFF2204	0.28	+0.6
2,222,522	+		GFF2204	0.33	+0.1
2,222,525	-		GFF2204	0.34	+0.3
2,222,535	-		GFF2204	0.36	+0.5
2,222,535	-		GFF2204	0.36	+1.2
2,222,554	-		GFF2204	0.42	-1.0
2,222,564	-		GFF2204	0.45	+0.3
2,222,626	+		GFF2204	0.62	+1.6
2,222,626	+		GFF2204	0.62	-1.5
2,222,632	-		GFF2204	0.64	-1.6
2,222,648	+		GFF2204	0.69	-1.8
2,222,730	+				-0.3
2,222,737	+				+0.8
2,222,738	-				+0.3
2,222,738	-				-1.2
2,222,753	+				-0.6
2,222,760	-				+0.4
2,222,763	+				+0.3
2,222,771	-				-2.0
2,222,778	-		GFF2205	0.12	+0.7
2,222,778	-		GFF2205	0.12	-1.1
2,222,818	+		GFF2205	0.33	+0.5
2,222,838	+		GFF2205	0.44	-0.3
2,222,844	-		GFF2205	0.47	-1.3
2,222,855	+		GFF2205	0.53	+0.4
2,222,863	-		GFF2205	0.57	-0.3
2,222,863	-		GFF2205	0.57	+1.5
2,222,863	-		GFF2205	0.57	-0.6
2,222,870	-		GFF2205	0.60	+0.5
2,222,877	-		GFF2205	0.64	-0.4
2,222,887	-		GFF2205	0.69	-0.2
2,222,899	-		GFF2205	0.76	-3.0
2,222,951	+				-0.6
2,222,959	-				+0.1
2,222,977	-		GFF2206	0.13	+0.1
2,222,999	+		GFF2206	0.21	-0.2
2,222,999	+		GFF2206	0.21	-0.9
2,222,999	+		GFF2206	0.21	-1.2
2,222,999	+		GFF2206	0.21	-2.3
2,222,999	+		GFF2206	0.21	+0.1
2,222,999	+		GFF2206	0.21	-0.5
2,223,004	+		GFF2206	0.23	+1.0
2,223,007	-		GFF2206	0.24	-0.8
2,223,007	-		GFF2206	0.24	-1.2
2,223,007	-		GFF2206	0.24	-0.7
2,223,007	-		GFF2206	0.24	+0.0
2,223,007	-		GFF2206	0.24	-2.2
2,223,007	-		GFF2206	0.24	-0.3
2,223,009	+		GFF2206	0.25	+0.0
2,223,012	-		GFF2206	0.26	-1.3
2,223,012	-		GFF2206	0.26	+0.9
2,223,012	-		GFF2206	0.26	-0.2
2,223,021	-		GFF2206	0.29	+1.0
2,223,022	-		GFF2206	0.29	-0.1
2,223,024	+		GFF2206	0.30	+0.0
2,223,028	+		GFF2206	0.32	-1.2
2,223,035	+		GFF2206	0.34	-0.6
2,223,042	+		GFF2206	0.37	-0.2
2,223,056	+		GFF2206	0.42	+0.3
2,223,061	+		GFF2206	0.44	+0.8
2,223,069	-		GFF2206	0.47	-0.4
2,223,069	-		GFF2206	0.47	-0.5
2,223,069	-		GFF2206	0.47	-1.8
2,223,069	-		GFF2206	0.47	-1.6
2,223,102	-		GFF2206	0.59	-0.5
2,223,102	-		GFF2206	0.59	-2.3
2,223,116	+		GFF2206	0.64	-0.8
2,223,124	-		GFF2206	0.67	-0.2
2,223,140	-		GFF2206	0.73	-0.0
2,223,162	-		GFF2206	0.81	-2.6
2,223,164	+		GFF2206	0.81	-0.6
2,223,164	+		GFF2206	0.81	-2.3
2,223,172	-		GFF2206	0.84	+0.9
2,223,172	-		GFF2206	0.84	+0.3
2,223,174	+		GFF2206	0.85	+0.8
2,223,182	-		GFF2206	0.88	-1.6
2,223,198	+				-0.3
2,223,204	-				-0.3
2,223,204	-				-0.1
2,223,204	-				-0.8
2,223,206	-				+0.3
2,223,220	-				+0.6
2,223,234	+				-2.1
2,223,239	-				-0.6
2,223,244	+		GFF2207	0.12	+0.4
2,223,252	-		GFF2207	0.14	+1.1
2,223,259	-		GFF2207	0.17	-1.1
2,223,294	+		GFF2207	0.29	-0.7
2,223,298	+		GFF2207	0.31	-0.3
2,223,302	-		GFF2207	0.32	-2.2
2,223,302	-		GFF2207	0.32	+1.8
2,223,330	+		GFF2207	0.42	+0.2
2,223,347	-		GFF2207	0.48	-0.5
2,223,393	+		GFF2207	0.64	-0.4
2,223,401	-		GFF2207	0.67	+1.5
2,223,407	+		GFF2207	0.69	-0.5
2,223,437	+		GFF2207	0.79	-0.7
2,223,437	+		GFF2207	0.79	+0.1
2,223,437	+		GFF2207	0.79	+0.2
2,223,444	+		GFF2207	0.82	-0.5
2,223,445	-		GFF2207	0.82	-0.0
2,223,446	-		GFF2207	0.82	-1.6
2,223,472	-				+0.8
2,223,476	+				-0.0
2,223,480	+				-2.2
2,223,505	+				-0.7
2,223,515	-				-0.5
2,223,529	+				-2.6
2,223,535	+				+0.1
2,223,554	+		GFF2208	0.11	+0.1
2,223,562	-		GFF2208	0.12	+1.1
2,223,577	-		GFF2208	0.15	+0.1
2,223,589	+		GFF2208	0.17	-1.2
2,223,589	+		GFF2208	0.17	+0.3
2,223,589	+		GFF2208	0.17	-0.7
2,223,590	+		GFF2208	0.17	-0.2
2,223,597	+		GFF2208	0.18	+1.5
2,223,597	+		GFF2208	0.18	+0.8
2,223,597	+		GFF2208	0.18	-0.8
2,223,597	+		GFF2208	0.18	-0.9
2,223,597	-		GFF2208	0.18	-0.4
2,223,614	+		GFF2208	0.21	-1.3
2,223,624	+		GFF2208	0.23	+0.7
2,223,624	+		GFF2208	0.23	+0.2
2,223,625	+		GFF2208	0.23	-0.6
2,223,629	+		GFF2208	0.24	-0.4
2,223,642	+		GFF2208	0.26	-1.7
2,223,647	+		GFF2208	0.27	+0.2
2,223,652	+		GFF2208	0.28	+0.2
2,223,655	-		GFF2208	0.28	-2.2
2,223,658	+		GFF2208	0.29	-0.4
2,223,660	-		GFF2208	0.29	-0.3
2,223,685	-		GFF2208	0.34	-2.0
2,223,687	+		GFF2208	0.34	+0.9
2,223,703	-		GFF2208	0.37	-0.1
2,223,724	+		GFF2208	0.40	+0.7
2,223,724	+		GFF2208	0.40	-1.6
2,223,735	+		GFF2208	0.42	-0.5
2,223,769	-		GFF2208	0.48	+0.2
2,223,769	-		GFF2208	0.48	-0.2
2,223,812	+		GFF2208	0.56	-1.9
2,223,812	+		GFF2208	0.56	+0.4
2,223,812	+		GFF2208	0.56	+0.2
2,223,812	+		GFF2208	0.56	-0.3
2,223,812	+		GFF2208	0.56	-0.8
2,223,812	+		GFF2208	0.56	-0.1
2,223,812	+		GFF2208	0.56	-0.3
2,223,820	-		GFF2208	0.57	-2.0
2,223,820	-		GFF2208	0.57	-2.5
2,223,820	-		GFF2208	0.57	+1.4
2,223,820	-		GFF2208	0.57	-0.1
2,223,820	-		GFF2208	0.57	-0.9
2,223,820	-		GFF2208	0.57	+0.2
2,223,830	+		GFF2208	0.59	-2.2
2,223,830	-		GFF2208	0.59	-0.1
2,223,834	+		GFF2208	0.59	-1.3
2,223,834	+		GFF2208	0.59	-0.0
2,223,834	+		GFF2208	0.59	-0.2
2,223,837	-		GFF2208	0.60	+0.6
2,223,837	-		GFF2208	0.60	-0.3
2,223,869	+		GFF2208	0.65	-0.2
2,223,869	+		GFF2208	0.65	+0.2
2,223,877	-		GFF2208	0.67	-1.7
2,223,877	-		GFF2208	0.67	+0.6
2,223,877	-		GFF2208	0.67	+0.1
2,223,883	+		GFF2208	0.68	-0.4
2,223,888	+		GFF2208	0.69	+0.3
2,223,888	+		GFF2208	0.69	+0.4
2,223,888	+		GFF2208	0.69	+0.1
2,223,893	+		GFF2208	0.70	+0.8
2,223,894	-		GFF2208	0.70	-0.3
2,223,895	-		GFF2208	0.70	-0.3
2,223,925	-		GFF2208	0.75	-0.2
2,223,940	-		GFF2208	0.78	-1.0
2,223,953	+		GFF2208	0.80	+0.1
2,223,953	+		GFF2208	0.80	+0.4
2,223,955	+		GFF2208	0.80	-0.7
2,223,955	+		GFF2208	0.80	-1.3
2,223,955	+		GFF2208	0.80	-0.4
2,223,955	+		GFF2208	0.80	-0.5
2,223,955	+		GFF2208	0.80	-1.7
2,223,955	+		GFF2208	0.80	-1.6
2,223,955	+		GFF2208	0.80	-0.3
2,223,955	+		GFF2208	0.80	-1.0
2,223,955	+		GFF2208	0.80	-1.5
2,223,955	+		GFF2208	0.80	-1.2
2,223,955	+		GFF2208	0.80	-0.6
2,223,955	+		GFF2208	0.80	-0.3
2,223,963	-		GFF2208	0.82	+0.4
2,223,963	-		GFF2208	0.82	-0.9
2,223,963	-		GFF2208	0.82	+0.9
2,223,963	-		GFF2208	0.82	-0.4
2,223,963	-		GFF2208	0.82	-0.1
2,223,963	-		GFF2208	0.82	+0.4
2,223,963	-		GFF2208	0.82	+0.3
2,223,965	+		GFF2208	0.82	-0.8
2,223,965	+		GFF2208	0.82	+0.4
2,223,968	-		GFF2208	0.83	+1.3
2,223,973	-		GFF2208	0.84	-1.5
2,223,973	-		GFF2208	0.84	+0.7
2,223,973	-		GFF2208	0.84	-1.7
2,223,973	-		GFF2208	0.84	+0.3
2,223,973	-		GFF2208	0.84	-0.4
2,223,992	+		GFF2208	0.87	-2.5
2,224,002	+		GFF2208	0.89	-1.5
2,224,002	+		GFF2208	0.89	-1.7
2,224,002	+		GFF2208	0.89	+1.1
2,224,005	+		GFF2208	0.89	-0.8
2,224,010	-				+0.1
2,224,010	-				+0.6
2,224,015	-				-1.3
2,224,015	-				-1.7
2,224,020	-				+0.6
2,224,020	-				+0.2
2,224,022	+				+0.8
2,224,022	+				+0.4
2,224,022	+				+1.2
2,224,022	+				-0.3
2,224,025	-				+0.1
2,224,027	+				-1.5
2,224,030	-				-0.1
2,224,030	-				+0.6
2,224,030	-				-2.0
2,224,030	-				-0.1
2,224,030	-				+0.6
2,224,030	-				-0.5
2,224,030	-				-1.4
2,224,033	+				+0.1
2,224,033	+				-0.4
2,224,041	-				-0.2
2,224,043	+				+1.2
2,224,051	-				+0.3
2,224,056	-				+0.3
2,224,073	-				-1.3
2,224,074	+				-1.1
2,224,074	+				-0.8
2,224,082	-				-1.7
2,224,082	-				+0.7
2,224,092	-				+0.2
2,224,098	+				-0.6
2,224,098	+				+1.1
2,224,100	+				-1.3
2,224,100	+				-0.7
2,224,100	+				-0.7
2,224,100	+				+1.4
2,224,108	-				+0.2
2,224,116	-		GFF2209	0.10	+0.5
2,224,118	+		GFF2209	0.11	-0.3
2,224,123	-		GFF2209	0.12	+0.1
2,224,152	-		GFF2209	0.17	-1.9
2,224,168	-		GFF2209	0.21	-1.6
2,224,175	+		GFF2209	0.22	+0.6
2,224,183	-		GFF2209	0.23	+0.3
2,224,187	-		GFF2209	0.24	+1.4
2,224,207	+		GFF2209	0.28	-2.0
2,224,212	+		GFF2209	0.29	-1.8
2,224,212	+		GFF2209	0.29	+0.2
2,224,212	+		GFF2209	0.29	-0.6
2,224,220	-		GFF2209	0.31	-0.7
2,224,220	-		GFF2209	0.31	-0.4
2,224,220	-		GFF2209	0.31	-0.3
2,224,220	-		GFF2209	0.31	-1.9
2,224,238	+		GFF2209	0.34	+0.1
2,224,278	-		GFF2209	0.42	+0.4
2,224,280	+		GFF2209	0.43	-2.3
2,224,285	+		GFF2209	0.44	-0.3
2,224,285	+		GFF2209	0.44	-1.2
2,224,288	-		GFF2209	0.44	-0.2
2,224,293	-		GFF2209	0.45	+0.4
2,224,294	-		GFF2209	0.45	-1.5
2,224,334	+		GFF2209	0.53	-1.5
2,224,342	+		GFF2209	0.55	-0.4
2,224,342	+		GFF2209	0.55	+0.1
2,224,346	-		GFF2209	0.56	-0.2
2,224,346	-		GFF2209	0.56	-0.2
2,224,361	-		GFF2209	0.59	+0.3
2,224,363	+		GFF2209	0.59	+0.5
2,224,412	+		GFF2209	0.69	-1.1
2,224,417	+		GFF2209	0.70	-0.5
2,224,430	-		GFF2209	0.72	+0.5
2,224,446	-		GFF2209	0.75	-2.2
2,224,463	-		GFF2209	0.79	+0.1
2,224,463	-		GFF2209	0.79	+0.7
2,224,479	+		GFF2209	0.82	+0.2
2,224,479	+		GFF2209	0.82	-0.3
2,224,479	+		GFF2209	0.82	+0.6
2,224,482	-		GFF2209	0.82	-2.0
2,224,494	+		GFF2209	0.85	+0.4