Strain Fitness in Sphingobium sp. HT1-2 around GFF2133

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,168,227	+				-2.6
2,168,232	+				-1.7
2,168,232	+				-1.6
2,168,235	-				-0.4
2,168,235	-				-0.2
2,168,261	-		GFF2132	0.12	-2.4
2,168,308	-		GFF2132	0.16	-2.5
2,168,316	+		GFF2132	0.17	-1.4
2,168,316	+		GFF2132	0.17	+0.2
2,168,316	+		GFF2132	0.17	-3.3
2,168,324	-		GFF2132	0.18	-1.8
2,168,326	+		GFF2132	0.18	-1.5
2,168,333	-		GFF2132	0.19	+0.4
2,168,336	+		GFF2132	0.19	-0.7
2,168,344	-		GFF2132	0.20	-0.9
2,168,344	-		GFF2132	0.20	-1.0
2,168,344	-		GFF2132	0.20	-2.5
2,168,344	-		GFF2132	0.20	-2.2
2,168,344	-		GFF2132	0.20	-1.6
2,168,344	-		GFF2132	0.20	-2.5
2,168,344	-		GFF2132	0.20	-0.3
2,168,345	-		GFF2132	0.20	-0.6
2,168,363	+		GFF2132	0.22	-0.0
2,168,363	+		GFF2132	0.22	-0.2
2,168,363	+		GFF2132	0.22	-1.9
2,168,363	+		GFF2132	0.22	-0.8
2,168,363	+		GFF2132	0.22	+0.0
2,168,363	+		GFF2132	0.22	-0.8
2,168,363	+		GFF2132	0.22	-1.7
2,168,363	+		GFF2132	0.22	-0.9
2,168,363	+		GFF2132	0.22	-2.3
2,168,363	+		GFF2132	0.22	-2.3
2,168,363	+		GFF2132	0.22	-0.5
2,168,363	+		GFF2132	0.22	-0.2
2,168,363	+		GFF2132	0.22	-0.7
2,168,363	+		GFF2132	0.22	-1.5
2,168,371	-		GFF2132	0.23	-1.3
2,168,371	-		GFF2132	0.23	-0.6
2,168,371	-		GFF2132	0.23	-0.9
2,168,371	-		GFF2132	0.23	+0.4
2,168,371	-		GFF2132	0.23	-0.4
2,168,371	-		GFF2132	0.23	-0.8
2,168,371	-		GFF2132	0.23	-2.0
2,168,371	-		GFF2132	0.23	+0.1
2,168,371	-		GFF2132	0.23	-0.4
2,168,371	-		GFF2132	0.23	-1.5
2,168,371	-		GFF2132	0.23	-1.6
2,168,371	-		GFF2132	0.23	-1.5
2,168,371	-		GFF2132	0.23	-1.4
2,168,371	-		GFF2132	0.23	-0.6
2,168,371	-		GFF2132	0.23	-0.6
2,168,371	-		GFF2132	0.23	-1.2
2,168,371	-		GFF2132	0.23	-2.0
2,168,371	-		GFF2132	0.23	-1.4
2,168,371	-		GFF2132	0.23	-1.6
2,168,371	-		GFF2132	0.23	-1.1
2,168,371	-		GFF2132	0.23	-1.5
2,168,371	-		GFF2132	0.23	-0.5
2,168,371	-		GFF2132	0.23	-2.7
2,168,371	-		GFF2132	0.23	-1.0
2,168,371	-		GFF2132	0.23	-1.1
2,168,371	-		GFF2132	0.23	-1.3
2,168,371	-		GFF2132	0.23	-0.4
2,168,371	-		GFF2132	0.23	+0.4
2,168,371	-		GFF2132	0.23	-2.2
2,168,371	-		GFF2132	0.23	-1.5
2,168,371	-		GFF2132	0.23	-0.7
2,168,371	-		GFF2132	0.23	-2.8
2,168,371	-		GFF2132	0.23	-2.7
2,168,375	+		GFF2132	0.23	+0.7
2,168,408	+		GFF2132	0.26	-1.7
2,168,408	+		GFF2132	0.26	-1.6
2,168,416	-		GFF2132	0.27	-2.0
2,168,429	+		GFF2132	0.28	-1.5
2,168,440	-		GFF2132	0.29	-1.5
2,168,457	+		GFF2132	0.31	-0.8
2,168,465	+		GFF2132	0.32	-0.5
2,168,465	-		GFF2132	0.32	-2.2
2,168,479	-		GFF2132	0.33	-2.1
2,168,479	-		GFF2132	0.33	-1.1
2,168,489	+		GFF2132	0.34	-2.7
2,168,489	+		GFF2132	0.34	-3.5
2,168,527	+		GFF2132	0.38	-1.3
2,168,528	+		GFF2132	0.38	-2.8
2,168,544	+		GFF2132	0.40	-2.6
2,168,552	-		GFF2132	0.40	-0.6
2,168,552	-		GFF2132	0.40	-2.6
2,168,571	-		GFF2132	0.42	-0.3
2,168,579	+		GFF2132	0.43	-1.4
2,168,583	+		GFF2132	0.44	-1.4
2,168,591	-		GFF2132	0.44	-1.6
2,168,591	-		GFF2132	0.44	-1.9
2,168,598	+		GFF2132	0.45	-1.4
2,168,601	+		GFF2132	0.45	-0.8
2,168,606	+		GFF2132	0.46	-0.8
2,168,606	+		GFF2132	0.46	-1.6
2,168,614	-		GFF2132	0.47	-1.8
2,168,614	-		GFF2132	0.47	-2.8
2,168,616	+		GFF2132	0.47	+0.1
2,168,719	+		GFF2132	0.57	-1.5
2,168,721	+		GFF2132	0.57	-1.3
2,168,742	+		GFF2132	0.59	-1.7
2,168,750	+		GFF2132	0.60	-1.5
2,168,752	+		GFF2132	0.60	-1.6
2,168,752	+		GFF2132	0.60	-0.7
2,168,784	+		GFF2132	0.63	-1.4
2,168,810	+		GFF2132	0.66	-2.6
2,168,813	+		GFF2132	0.66	-0.6
2,168,815	+		GFF2132	0.66	-0.4
2,168,820	+		GFF2132	0.67	+0.0
2,168,831	+		GFF2132	0.68	-0.8
2,168,857	+		GFF2132	0.71	+0.4
2,168,863	+		GFF2132	0.71	-0.4
2,168,902	+		GFF2132	0.75	-0.7
2,168,909	+		GFF2132	0.76	-1.4
2,168,922	+		GFF2132	0.77	-2.4
2,168,935	-		GFF2132	0.78	-0.8
2,168,935	-		GFF2132	0.78	-1.6
2,168,935	-		GFF2132	0.78	-2.4
2,168,982	-		GFF2132	0.83	-0.3
2,169,008	+		GFF2132	0.86	-2.6
2,169,008	+		GFF2132	0.86	-0.8
2,169,016	+		GFF2132	0.86	-1.7
2,169,016	-		GFF2132	0.86	-0.4
2,169,023	+		GFF2132	0.87	-2.1
2,169,023	+		GFF2132	0.87	-1.3
2,169,023	+		GFF2132	0.87	-2.1
2,169,023	+		GFF2132	0.87	-2.6
2,169,023	+		GFF2132	0.87	-1.2
2,169,024	-		GFF2132	0.87	-2.4
2,169,031	-		GFF2132	0.88	-3.5
2,169,031	-		GFF2132	0.88	-2.6
2,169,031	-		GFF2132	0.88	-1.3
2,169,037	-		GFF2132	0.88	+0.3
2,169,069	+				+0.1
2,169,077	-				-3.4
2,169,080	+				-2.6
2,169,088	-				-1.9
2,169,110	-				-2.0
2,169,110	-				-2.1
2,169,128	+				-1.0
2,169,129	-				-0.4
2,169,163	-				-1.2
2,169,181	+				-1.5
2,169,181	+				-0.5
2,169,181	+				+0.8
2,169,181	+				-1.9
2,169,183	+				-1.0
2,169,188	-				+0.5
2,169,189	-				+0.2
2,169,189	-				-0.6
2,169,189	-				-0.7
2,169,206	+				-2.8
2,169,206	+				-0.4
2,169,206	+				-2.4
2,169,206	+				-0.5
2,169,211	+				-2.3
2,169,214	-				+1.2
2,169,214	-				+1.2
2,169,214	-				-0.1
2,169,214	-				+0.7
2,169,214	-				-0.6
2,169,214	-				-1.3
2,169,214	-				+0.5
2,169,214	-				-0.6
2,169,214	-				+0.4
2,169,214	-				-0.5
2,171,261	-		GFF2134	0.49	+1.0
2,171,282	+		GFF2134	0.61	-1.1
2,171,290	-		GFF2134	0.66	-2.9
2,171,357	+				-0.3
2,171,370	-		GFF2135	0.14	-1.5
2,171,386	+		GFF2135	0.23	-0.3
2,171,391	+		GFF2135	0.25	-0.6
2,171,394	-		GFF2135	0.27	+0.4
2,171,396	+		GFF2135	0.28	+0.6
2,171,402	+		GFF2135	0.32	+0.3
2,171,405	-		GFF2135	0.33	+0.0
2,171,415	-		GFF2135	0.39	-0.3
2,171,419	+		GFF2135	0.41	+1.6
2,171,466	+		GFF2135	0.68	+1.1
2,171,525	-				-0.3
2,171,526	-				+0.2
2,171,549	+		GFF2136	0.10	+0.1
2,171,557	-		GFF2136	0.12	-0.2
2,171,562	-		GFF2136	0.14	-1.0
2,171,613	+		GFF2136	0.29	-0.8
2,171,613	+		GFF2136	0.29	-1.6
2,171,614	+		GFF2136	0.29	+0.2
2,171,621	-		GFF2136	0.32	-0.4
2,171,621	-		GFF2136	0.32	-2.0
2,171,621	-		GFF2136	0.32	+0.6
2,171,624	+		GFF2136	0.32	-0.9
2,171,624	+		GFF2136	0.32	+0.5
2,171,624	+		GFF2136	0.32	+0.4
2,171,632	-		GFF2136	0.35	-0.8
2,171,634	+		GFF2136	0.35	-0.3
2,171,642	+		GFF2136	0.38	-0.3
2,171,642	+		GFF2136	0.38	-2.8
2,171,646	+		GFF2136	0.39	-3.0
2,171,650	-		GFF2136	0.40	+0.4
2,171,650	-		GFF2136	0.40	-1.3
2,171,650	-		GFF2136	0.40	+0.3
2,171,651	+		GFF2136	0.40	-0.2
2,171,658	+		GFF2136	0.43	+1.8
2,171,659	+		GFF2136	0.43	-1.3
2,171,659	-		GFF2136	0.43	-0.2
2,171,665	+		GFF2136	0.45	-0.8
2,171,666	-		GFF2136	0.45	-0.3
2,171,685	+		GFF2136	0.51	+0.5
2,171,685	+		GFF2136	0.51	-0.8
2,171,685	+		GFF2136	0.51	-1.3
2,171,685	+		GFF2136	0.51	-0.3
2,171,685	+		GFF2136	0.51	-0.4
2,171,685	+		GFF2136	0.51	+0.5
2,171,688	-		GFF2136	0.51	-1.2
2,171,693	-		GFF2136	0.53	+0.2
2,171,693	-		GFF2136	0.53	-1.2
2,171,717	-		GFF2136	0.60	-1.6
2,171,746	+		GFF2136	0.69	+0.6
2,171,751	+		GFF2136	0.70	-0.1
2,171,751	+		GFF2136	0.70	-1.3
2,171,782	+		GFF2136	0.79	-0.3
2,171,790	-		GFF2136	0.82	+0.2
2,171,790	-		GFF2136	0.82	-0.3
2,171,811	+		GFF2136	0.88	+0.4
2,171,864	+				-0.2
2,171,894	+				+0.9
2,171,926	+				-1.0
2,171,930	-				-1.3
2,171,938	+				-2.1
2,171,961	-				-1.4
2,172,020	+				+0.5
2,172,028	-				-0.8
2,172,032	-				-0.3
2,172,043	+				+1.5
2,172,047	-				-0.7
2,172,051	-				-2.2
2,172,075	+				-0.8
2,172,083	-				-0.3
2,172,083	-				+0.8
2,172,083	-				+0.5
2,172,141	+		GFF2137	0.16	-1.2
2,172,141	+		GFF2137	0.16	+0.5
2,172,142	-		GFF2137	0.16	+0.4
2,172,142	-		GFF2137	0.16	-0.7
2,172,154	+		GFF2137	0.18	+1.2