Strain Fitness in Sphingobium sp. HT1-2 around GFF2128

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,162,895	+		GFF2127	0.23	-1.2
2,162,914	+		GFF2127	0.25	-0.8
2,162,914	+		GFF2127	0.25	+0.7
2,162,914	+		GFF2127	0.25	-2.0
2,162,941	+		GFF2127	0.27	-0.3
2,162,941	+		GFF2127	0.27	-0.5
2,162,995	+		GFF2127	0.32	-1.5
2,163,015	+		GFF2127	0.34	-0.7
2,163,017	-		GFF2127	0.34	-0.7
2,163,068	-		GFF2127	0.39	-0.9
2,163,099	-		GFF2127	0.41	-2.2
2,163,099	-		GFF2127	0.41	+0.3
2,163,112	+		GFF2127	0.42	-1.3
2,163,136	+		GFF2127	0.45	-0.1
2,163,161	+		GFF2127	0.47	+1.1
2,163,176	+		GFF2127	0.48	-0.9
2,163,176	+		GFF2127	0.48	+0.9
2,163,176	+		GFF2127	0.48	+0.4
2,163,184	-		GFF2127	0.49	+0.2
2,163,184	-		GFF2127	0.49	+0.9
2,163,184	-		GFF2127	0.49	+1.8
2,163,184	-		GFF2127	0.49	-2.0
2,163,201	-		GFF2127	0.50	-0.3
2,163,201	-		GFF2127	0.50	+0.8
2,163,206	+		GFF2127	0.51	-1.4
2,163,206	-		GFF2127	0.51	-1.7
2,163,231	+		GFF2127	0.53	+0.7
2,163,264	-		GFF2127	0.56	-0.5
2,163,267	+		GFF2127	0.56	-0.7
2,163,273	+		GFF2127	0.57	-0.8
2,163,279	-		GFF2127	0.57	+0.2
2,163,287	+		GFF2127	0.58	+0.3
2,163,290	-		GFF2127	0.58	-0.4
2,163,308	+		GFF2127	0.60	-1.2
2,163,313	-		GFF2127	0.60	-2.5
2,163,336	+		GFF2127	0.62	+0.2
2,163,336	+		GFF2127	0.62	+1.0
2,163,336	+		GFF2127	0.62	-1.7
2,163,336	+		GFF2127	0.62	-1.0
2,163,344	-		GFF2127	0.63	-1.0
2,163,344	-		GFF2127	0.63	-1.4
2,163,344	-		GFF2127	0.63	-0.3
2,163,344	-		GFF2127	0.63	-0.9
2,163,345	-		GFF2127	0.63	-0.2
2,163,350	-		GFF2127	0.64	-0.7
2,163,360	+		GFF2127	0.64	-1.4
2,163,368	-		GFF2127	0.65	-0.2
2,163,393	+		GFF2127	0.67	-1.6
2,163,393	+		GFF2127	0.67	+0.6
2,163,401	-		GFF2127	0.68	-2.5
2,163,401	-		GFF2127	0.68	-2.1
2,163,420	+		GFF2127	0.70	-2.2
2,163,422	-		GFF2127	0.70	-1.7
2,163,448	-		GFF2127	0.72	-0.0
2,163,467	+		GFF2127	0.74	+0.9
2,163,478	+		GFF2127	0.75	+0.6
2,163,484	+		GFF2127	0.75	-0.6
2,163,488	+		GFF2127	0.76	+1.0
2,163,489	+		GFF2127	0.76	+0.7
2,163,497	-		GFF2127	0.77	-1.0
2,163,521	+		GFF2127	0.79	-0.8
2,163,529	-		GFF2127	0.79	+1.0
2,163,566	-		GFF2127	0.83	+0.5
2,163,568	-		GFF2127	0.83	-1.2
2,163,576	-		GFF2127	0.84	+0.0
2,163,584	+		GFF2127	0.84	-0.7
2,163,593	+		GFF2127	0.85	+0.8
2,163,601	-		GFF2127	0.86	+0.1
2,163,622	+		GFF2127	0.88	+0.7
2,163,622	+		GFF2127	0.88	+0.2
2,163,622	+		GFF2127	0.88	-0.7
2,163,622	+		GFF2127	0.88	+1.1
2,163,622	+		GFF2127	0.88	-2.0
2,163,630	-		GFF2127	0.88	-1.3
2,163,630	-		GFF2127	0.88	-0.2
2,163,630	-		GFF2127	0.88	+0.8
2,163,630	-		GFF2127	0.88	-0.2
2,163,630	-		GFF2127	0.88	-0.5
2,163,670	+				-0.2
2,163,670	+				-0.4
2,163,670	+				-1.3
2,163,670	+				-0.8
2,163,670	+				-2.9
2,163,670	+				+0.5
2,163,670	+				-0.4
2,163,670	+				-1.3
2,163,670	+				-2.9
2,163,670	+				-1.3
2,163,670	+				-1.3
2,163,670	+				-1.1
2,163,670	+				+0.8
2,163,670	+				-0.2
2,163,670	+				+0.9
2,163,670	+				+0.6
2,163,670	+				-0.2
2,163,670	+				-0.7
2,163,670	+				+0.1
2,163,677	+				-2.0
2,163,678	-				-0.8
2,163,678	-				+1.2
2,163,678	-				+0.5
2,163,678	-				+0.0
2,163,678	-				+0.4
2,163,678	-				-0.2
2,163,678	-				+1.1
2,163,678	-				-1.0
2,163,678	-				+0.3
2,163,678	-				+0.1
2,163,678	-				+0.2
2,163,678	-				-2.9
2,163,726	+				-1.0
2,163,737	-				+0.2
2,163,739	-				+0.7
2,163,739	-				-0.6
2,163,739	-				-0.5
2,163,762	-				-0.8
2,163,771	-				-1.2
2,163,776	-				-0.4
2,163,776	-				-0.2
2,163,791	-				+1.0
2,163,791	-				-0.1
2,163,801	-				-0.1
2,163,801	-				+0.6
2,163,801	-				-0.9
2,163,801	-				+0.1
2,163,802	-				-0.1
2,163,813	+				-0.0
2,163,813	+				+1.1
2,163,813	+				+0.9
2,163,813	+				+0.2
2,163,814	+				-1.3
2,163,815	-				+0.6
2,163,821	-				+0.1
2,163,874	+				-1.0
2,163,882	-				-0.3
2,163,882	-				+0.9
2,163,882	-				+1.3
2,163,882	-				-0.0
2,163,882	-				-0.8
2,163,884	+				-2.6
2,163,884	+				-2.1
2,163,892	-				+0.8
2,163,898	+				-0.2
2,163,900	-				-0.1
2,163,911	-				+1.1
2,163,917	-				-0.6
2,163,919	+				-0.1
2,164,811	-				-1.2
2,164,816	-				-1.3
2,164,818	-				+0.6
2,164,822	-				-1.2
2,164,876	-				-1.2
2,164,878	-				-0.9
2,164,891	-				-0.3
2,164,925	-				-1.4
2,164,935	-				-1.0
2,164,940	+				-0.8
2,164,947	+				-0.3
2,164,948	-				+0.0
2,164,948	-				+0.1
2,164,949	+				-0.4
2,164,949	+				-0.2
2,164,955	-				-2.0
2,164,957	-				-2.2
2,164,964	+				-0.6
2,164,975	+				-0.4
2,165,003	-				-0.0
2,165,003	-				+0.5
2,165,013	-				+0.2
2,165,019	+				+0.8
2,165,026	+				-1.0
2,165,026	+				-0.7
2,165,026	+				-0.2
2,165,081	+				-0.1
2,165,082	+				-2.3
2,165,088	+				-0.6
2,165,088	+				-0.2
2,165,088	+				-0.2
2,165,106	-				+0.3
2,165,117	-		GFF2129	0.11	-1.6
2,165,121	-		GFF2129	0.12	-1.2
2,165,167	+		GFF2129	0.21	-0.2
2,165,181	+		GFF2129	0.24	-0.1
2,165,203	+		GFF2129	0.29	-1.0
2,165,203	+		GFF2129	0.29	-1.2
2,165,203	+		GFF2129	0.29	-0.4
2,165,203	+		GFF2129	0.29	-1.2
2,165,210	+		GFF2129	0.30	-0.2
2,165,211	-		GFF2129	0.30	-2.1
2,165,214	+		GFF2129	0.31	-1.0
2,165,244	+		GFF2129	0.37	-0.3
2,165,244	+		GFF2129	0.37	-1.1
2,165,248	-		GFF2129	0.38	-0.9
2,165,257	-		GFF2129	0.40	+0.2
2,165,286	+		GFF2129	0.45	+1.8
2,165,291	-		GFF2129	0.46	-0.1
2,165,331	+		GFF2129	0.54	+0.1
2,165,340	+		GFF2129	0.56	-0.6
2,165,340	+		GFF2129	0.56	-0.1
2,165,348	-		GFF2129	0.58	-0.6
2,165,348	-		GFF2129	0.58	+1.2
2,165,359	+		GFF2129	0.60	+0.4
2,165,367	-		GFF2129	0.62	-2.0
2,165,378	+		GFF2129	0.64	+0.7
2,165,381	+		GFF2129	0.64	-0.2
2,165,386	+		GFF2129	0.65	-0.2
2,165,386	-		GFF2129	0.65	-0.0
2,165,404	+		GFF2129	0.69	-0.4
2,165,412	-		GFF2129	0.71	+0.4
2,165,423	-		GFF2129	0.73	-0.5
2,165,428	+		GFF2129	0.74	-0.8
2,165,430	+		GFF2129	0.74	-0.6
2,165,473	+		GFF2129	0.83	-1.1
2,165,473	+		GFF2129	0.83	-0.2
2,165,481	-		GFF2129	0.85	-0.0
2,165,481	-		GFF2129	0.85	-0.1
2,165,499	+		GFF2129	0.88	-0.1
2,165,521	+				+0.8
2,165,521	+				+0.3
2,165,521	+				-0.0
2,165,529	-				+1.2
2,165,529	-				-0.3
2,165,529	-				-0.2
2,165,554	-				-0.2
2,165,572	+				+0.6
2,165,580	-				-0.6
2,165,625	+				-0.4
2,165,652	+				-0.1
2,165,660	-				-0.7
2,165,679	+				-0.3
2,165,679	+				+0.8
2,165,679	+				-0.4
2,165,679	+				-0.7
2,165,679	+				+0.6
2,165,679	+				-0.8
2,165,687	-				+0.7
2,165,687	-				-0.1
2,165,687	-				-1.4
2,165,722	+				+1.9
2,165,722	+				-0.0
2,165,738	+				-1.2
2,165,738	+				+1.0
2,165,741	+				-0.1
2,165,746	-				-0.0
2,165,746	-				-1.7
2,165,746	-				-1.0
2,165,746	-				-1.0
2,165,746	-				-0.8
2,165,746	-				-2.0
2,165,781	-		GFF2130	0.12	-0.1