Strain Fitness in Sphingobium sp. HT1-2 around GFF2117

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2116 and GFF2117 overlap by 1 nucleotidesGFF2117 and GFF2118 are separated by 1 nucleotidesGFF2118 and GFF2119 overlap by 10 nucleotides GFF2116 - NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 2,154,470 to 2,155,705 GFF2116 GFF2117 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3), at 2,155,705 to 2,156,493 GFF2117 GFF2118 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 2,156,495 to 2,157,049 GFF2118 GFF2119 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 2,157,040 to 2,157,414 GFF2119 Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -1 0 1at 2155.711 kb on - strandat 2155.711 kb on - strandat 2155.830 kb on - strand, within GFF2117at 2156.501 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
2,155,711 - +1.4
2,155,711 - -1.6
2,155,830 - GFF2117 0.16 -0.2
2,156,501 - +1.3

Or see this region's nucleotide sequence