Strain Fitness in Sphingobium sp. HT1-2 around GFF2113

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2112 and GFF2113 overlap by 4 nucleotidesGFF2113 and GFF2114 are separated by 2 nucleotides GFF2112 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 2,149,401 to 2,150,450 GFF2112 GFF2113 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 2,150,447 to 2,152,453 GFF2113 GFF2114 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 2,152,456 to 2,153,790 GFF2114 Position (kb) 2150 2151 2152 2153Strain fitness (log2 ratio) -2 -1 0 1at 2152.461 kb on - strandat 2152.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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2,152,461 - -2.2
2,152,489 - -1.5

Or see this region's nucleotide sequence