Strain Fitness in Sphingobium sp. HT1-2 around GFF2111

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2108 and GFF2109 are separated by 10 nucleotidesGFF2109 and GFF2110 overlap by 4 nucleotidesGFF2110 and GFF2111 are separated by 29 nucleotidesGFF2111 and GFF2112 overlap by 4 nucleotides GFF2108 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 2,145,884 to 2,147,965 GFF2108 GFF2109 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3), at 2,147,976 to 2,148,281 GFF2109 GFF2110 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 2,148,278 to 2,148,889 GFF2110 GFF2111 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 2,148,919 to 2,149,404 GFF2111 GFF2112 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 2,149,401 to 2,150,450 GFF2112 Position (kb) 2148 2149 2150Strain fitness (log2 ratio) -1 0 1at 2149.435 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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2,149,435 - -1.3

Or see this region's nucleotide sequence