Strain Fitness in Sphingobium sp. HT1-2 around GFF2104

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2103 and GFF2104 overlap by 4 nucleotidesGFF2104 and GFF2105 are separated by 10 nucleotidesGFF2105 and GFF2106 are separated by 44 nucleotides GFF2103 - Ribonuclease J (endonuclease and 5, at 2,139,758 to 2,141,395 GFF2103 GFF2104 - Pantothenate kinase type III, CoaX-like (EC 2.7.1.33), at 2,141,392 to 2,142,174 GFF2104 GFF2105 - Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15), at 2,142,185 to 2,142,850 GFF2105 GFF2106 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 2,142,895 to 2,144,331 GFF2106 Position (kb) 2141 2142 2143Strain fitness (log2 ratio) -2 -1 0 1at 2142.191 kb on - strandat 2142.191 kb on - strandat 2142.882 kb on + strandat 2142.882 kb on + strandat 2142.882 kb on + strandat 2142.893 kb on + strandat 2142.901 kb on - strandat 2142.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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2,142,191 - -1.5
2,142,191 - -1.3
2,142,882 + -0.2
2,142,882 + -0.4
2,142,882 + +0.9
2,142,893 + -1.0
2,142,901 - -2.0
2,142,901 - -0.5

Or see this region's nucleotide sequence