Strain Fitness in Sphingobium sp. HT1-2 around GFF2069

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,105,132	-		GFF2067	0.47	-0.6
2,105,133	+		GFF2067	0.47	+0.0
2,105,185	+		GFF2067	0.52	-1.2
2,105,190	+		GFF2067	0.52	-1.2
2,105,192	-		GFF2067	0.52	-1.2
2,105,193	-		GFF2067	0.52	-0.9
2,105,202	-		GFF2067	0.53	+1.3
2,105,202	-		GFF2067	0.53	-0.6
2,105,203	-		GFF2067	0.53	-0.2
2,105,205	+		GFF2067	0.54	-1.9
2,105,235	+		GFF2067	0.57	+0.6
2,105,265	+		GFF2067	0.60	-1.9
2,105,265	+		GFF2067	0.60	-1.2
2,105,275	+		GFF2067	0.61	-0.9
2,105,293	+		GFF2067	0.62	+1.0
2,105,293	+		GFF2067	0.62	+0.7
2,105,293	-		GFF2067	0.62	-1.9
2,105,301	-		GFF2067	0.63	-1.5
2,105,301	-		GFF2067	0.63	+0.2
2,105,301	-		GFF2067	0.63	-0.3
2,105,301	-		GFF2067	0.63	-1.1
2,105,306	-		GFF2067	0.64	-1.7
2,105,325	-		GFF2067	0.65	-1.0
2,105,332	-		GFF2067	0.66	-0.7
2,105,339	+		GFF2067	0.67	-0.9
2,105,357	-		GFF2067	0.69	-0.2
2,105,393	-		GFF2067	0.72	-0.2
2,105,436	-		GFF2067	0.76	-0.4
2,105,458	-		GFF2067	0.78	-2.7
2,105,470	+		GFF2067	0.80	-0.1
2,105,543	-		GFF2067	0.87	-0.5
2,105,553	+		GFF2067	0.88	-1.6
2,105,575	+		GFF2067	0.90	+0.8
2,105,632	+				-0.3
2,105,671	+				-0.4
2,105,671	+				-2.5
2,105,679	-				-1.6
2,105,681	+				-0.9
2,105,681	+				-1.0
2,105,681	+				+1.0
2,105,699	-				+1.0
2,105,720	-				-0.2
2,105,736	+				-0.6
2,105,740	+		GFF2068	0.11	-0.7
2,105,746	+		GFF2068	0.13	+0.7
2,105,748	-		GFF2068	0.13	-1.1
2,105,757	-		GFF2068	0.16	-2.1
2,105,778	-		GFF2068	0.21	+0.4
2,105,778	-		GFF2068	0.21	+0.9
2,105,827	-		GFF2068	0.34	+0.2
2,105,827	-		GFF2068	0.34	-0.0
2,105,853	-		GFF2068	0.41	+1.0
2,105,855	+		GFF2068	0.42	-0.9
2,105,864	-		GFF2068	0.44	-1.3
2,105,864	-		GFF2068	0.44	+0.6
2,105,886	+		GFF2068	0.50	-0.6
2,105,906	-		GFF2068	0.56	-0.7
2,105,912	-		GFF2068	0.57	+0.2
2,105,930	-		GFF2068	0.62	-2.3
2,105,941	-		GFF2068	0.65	-0.4
2,105,958	+		GFF2068	0.70	-0.0
2,106,029	+		GFF2068	0.89	-0.2
2,106,029	+		GFF2068	0.89	-1.3
2,106,029	+		GFF2068	0.89	-0.9
2,106,036	-				-0.1
2,106,050	+				-0.2
2,106,051	+				-2.4
2,106,051	+				-0.9
2,106,051	+				-0.8
2,106,051	+				+0.1
2,106,059	-				+0.3
2,106,063	-				+0.3
2,106,064	-				+0.7
2,106,086	-				+1.0
2,106,090	+				-0.5
2,106,090	+				-1.6
2,106,090	+				+0.6
2,106,096	+				-1.0
2,106,096	+				-0.8
2,106,096	+				+0.1
2,106,096	-				-1.5
2,106,098	-				-0.2
2,106,098	-				-0.4
2,106,098	-				-0.9
2,106,104	-				-0.4
2,106,104	-				-0.0
2,106,105	-				-0.1
2,106,116	+				-0.7
2,106,124	+				-1.4
2,106,124	-				+0.2
2,106,124	-				-1.0
2,106,124	-				-1.2
2,106,124	-				-1.1
2,106,132	-				+0.4
2,106,156	-				+0.1
2,106,174	+		GFF2069	0.13	+0.1
2,106,187	+		GFF2069	0.16	-0.2
2,106,195	+		GFF2069	0.18	-0.9
2,106,195	-		GFF2069	0.18	+0.8
2,106,195	-		GFF2069	0.18	+0.4
2,106,195	-		GFF2069	0.18	-0.9
2,106,195	-		GFF2069	0.18	-0.2
2,106,203	-		GFF2069	0.20	+0.2
2,106,231	-		GFF2069	0.27	-0.9
2,106,248	+		GFF2069	0.31	-1.0
2,106,266	+		GFF2069	0.35	-0.6
2,106,266	+		GFF2069	0.35	+0.3
2,106,298	-		GFF2069	0.43	-2.3
2,106,298	-		GFF2069	0.43	-0.2
2,106,306	-		GFF2069	0.45	-0.4
2,106,323	-		GFF2069	0.49	-0.2
2,106,349	-		GFF2069	0.56	+0.8
2,106,349	-		GFF2069	0.56	+1.6
2,106,349	-		GFF2069	0.56	-0.7
2,106,372	-		GFF2069	0.61	-1.0
2,106,420	+		GFF2069	0.73	-0.2
2,106,431	+		GFF2069	0.76	-0.6
2,106,431	+		GFF2069	0.76	-0.6
2,106,431	+		GFF2069	0.76	-0.1
2,106,431	+		GFF2069	0.76	+0.3
2,106,431	+		GFF2069	0.76	+0.6
2,106,439	-		GFF2069	0.78	+0.6
2,106,439	-		GFF2069	0.78	-1.3
2,106,439	-		GFF2069	0.78	-1.5
2,106,439	-		GFF2069	0.78	-1.0
2,106,439	-		GFF2069	0.78	-0.1
2,106,439	-		GFF2069	0.78	-1.7
2,106,439	-		GFF2069	0.78	-1.1
2,106,439	-		GFF2069	0.78	-0.8
2,106,439	-		GFF2069	0.78	-1.9
2,106,456	-		GFF2069	0.82	+1.4
2,106,464	+		GFF2069	0.84	-0.3
2,106,472	-		GFF2069	0.86	-0.8
2,106,484	-		GFF2069	0.89	-2.6
2,106,489	-				+1.6
2,106,511	+				-0.4
2,106,515	-				-0.7
2,106,519	-				-1.1
2,106,529	-				-1.0
2,106,540	+				-0.1
2,106,540	+				+0.8
2,106,548	+				-0.2
2,106,548	-				+0.1
2,106,548	-				-1.1
2,106,548	-				+0.2
2,106,563	+				-0.6
2,106,563	+				+0.1
2,106,563	+				+1.2
2,106,571	-				+0.7
2,106,571	-				-1.7
2,106,571	-				+0.5
2,106,571	-				-1.3
2,106,571	-				+0.8
2,106,571	-				+0.6
2,106,571	-				-1.4
2,106,581	-				-0.7
2,106,596	-				-1.4
2,106,662	+				+0.2
2,106,662	+				-0.6
2,106,670	-				-2.4
2,106,671	+				-0.2
2,106,696	+				-0.4
2,106,704	-				-1.7
2,106,717	-				-2.0
2,106,729	+				-1.5
2,106,737	-				+0.2
2,106,737	-				-0.8
2,106,737	-				+0.7
2,106,759	+				-0.2
2,106,759	+				-0.1
2,106,759	+				+0.0
2,106,767	-				+0.6
2,106,770	-				+0.7
2,106,772	-				-0.3
2,106,785	-				+0.2
2,106,795	-		GFF2070	0.11	-0.2
2,106,803	+		GFF2070	0.11	-1.4
2,106,803	+		GFF2070	0.11	+0.1
2,106,803	+		GFF2070	0.11	-0.4
2,106,808	+		GFF2070	0.12	-0.6
2,106,816	-		GFF2070	0.12	-0.9
2,106,830	-		GFF2070	0.13	+0.8
2,106,904	-		GFF2070	0.19	-0.1
2,106,919	-		GFF2070	0.20	-0.6
2,106,922	+		GFF2070	0.20	+0.2
2,106,924	-		GFF2070	0.20	-0.1
2,106,928	+		GFF2070	0.20	-0.8
2,106,931	-		GFF2070	0.21	-0.5
2,106,933	+		GFF2070	0.21	+1.4
2,106,933	+		GFF2070	0.21	-0.2
2,106,933	+		GFF2070	0.21	-1.4
2,106,933	+		GFF2070	0.21	+1.1
2,106,933	+		GFF2070	0.21	-0.6
2,106,933	+		GFF2070	0.21	-1.0
2,106,941	-		GFF2070	0.21	+0.0
2,106,971	+		GFF2070	0.24	+0.5
2,106,988	+		GFF2070	0.25	-1.3
2,107,045	+		GFF2070	0.29	-1.4
2,107,045	+		GFF2070	0.29	-1.4
2,107,045	+		GFF2070	0.29	+1.2
2,107,045	+		GFF2070	0.29	-1.6
2,107,053	-		GFF2070	0.30	+0.3
2,107,054	-		GFF2070	0.30	-1.2
2,107,054	-		GFF2070	0.30	+0.2
2,107,080	+		GFF2070	0.32	+0.7
2,107,080	+		GFF2070	0.32	-0.7
2,107,093	-		GFF2070	0.33	+0.2
2,107,096	-		GFF2070	0.33	-0.0
2,107,106	-		GFF2070	0.34	+0.3
2,107,116	+		GFF2070	0.34	+0.9
2,107,116	+		GFF2070	0.34	-1.3
2,107,124	-		GFF2070	0.35	+0.6
2,107,124	-		GFF2070	0.35	-0.6
2,107,208	+		GFF2070	0.41	-1.8
2,107,235	+		GFF2070	0.43	-2.2
2,107,235	+		GFF2070	0.43	-0.9
2,107,235	+		GFF2070	0.43	-0.4
2,107,240	+		GFF2070	0.44	-0.7
2,107,240	+		GFF2070	0.44	-0.4
2,107,240	+		GFF2070	0.44	-1.2
2,107,241	+		GFF2070	0.44	+1.0
2,107,243	-		GFF2070	0.44	+0.9
2,107,243	-		GFF2070	0.44	+0.1
2,107,243	-		GFF2070	0.44	-0.7
2,107,248	-		GFF2070	0.44	-0.9
2,107,249	-		GFF2070	0.44	-1.5
2,107,269	-		GFF2070	0.46	+0.0
2,107,273	+		GFF2070	0.46	+1.4
2,107,273	+		GFF2070	0.46	-0.3
2,107,274	+		GFF2070	0.46	-2.5
2,107,281	-		GFF2070	0.47	-0.9
2,107,281	-		GFF2070	0.47	+1.0
2,107,281	-		GFF2070	0.47	-1.3
2,107,281	-		GFF2070	0.47	+0.1
2,107,281	-		GFF2070	0.47	+0.7
2,107,281	-		GFF2070	0.47	-1.6
2,107,300	-		GFF2070	0.48	-1.6
2,107,305	-		GFF2070	0.48	-0.5
2,107,333	+		GFF2070	0.50	-1.3
2,107,341	-		GFF2070	0.51	-0.4
2,107,372	+		GFF2070	0.53	+0.4
2,107,373	-		GFF2070	0.53	+0.2
2,107,389	+		GFF2070	0.55	+1.8
2,107,389	+		GFF2070	0.55	-0.3
2,107,389	+		GFF2070	0.55	-1.9
2,107,389	+		GFF2070	0.55	+0.4
2,107,389	+		GFF2070	0.55	+0.8
2,107,389	+		GFF2070	0.55	+0.6
2,107,397	-		GFF2070	0.55	-0.3
2,107,397	-		GFF2070	0.55	-1.3
2,107,397	-		GFF2070	0.55	-0.4
2,107,427	+		GFF2070	0.57	+0.3
2,107,427	+		GFF2070	0.57	+0.7
2,107,427	+		GFF2070	0.57	-0.2
2,107,427	+		GFF2070	0.57	+1.3
2,107,428	+		GFF2070	0.58	-0.4
2,107,432	+		GFF2070	0.58	-0.1
2,107,435	-		GFF2070	0.58	-0.3
2,107,461	+		GFF2070	0.60	+0.1
2,107,464	-		GFF2070	0.60	-0.2
2,107,486	-		GFF2070	0.62	+0.2
2,107,491	-		GFF2070	0.62	+0.7
2,107,502	+		GFF2070	0.63	-0.6
2,107,502	+		GFF2070	0.63	-0.2
2,107,502	+		GFF2070	0.63	+0.0
2,107,502	+		GFF2070	0.63	-0.3
2,107,502	+		GFF2070	0.63	-0.8
2,107,510	-		GFF2070	0.64	+1.1
2,107,510	-		GFF2070	0.64	-1.0
2,107,510	-		GFF2070	0.64	+0.5