Strain Fitness in Sphingobium sp. HT1-2 around GFF2047

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,084,437	-		GFF2046	0.12	-1.2
2,084,438	-		GFF2046	0.12	-2.3
2,084,438	-		GFF2046	0.12	-1.3
2,084,438	-		GFF2046	0.12	-1.3
2,084,458	-		GFF2046	0.14	+0.5
2,084,460	-		GFF2046	0.14	+0.4
2,084,495	-		GFF2046	0.17	+0.1
2,084,498	+		GFF2046	0.18	-0.2
2,084,498	+		GFF2046	0.18	+0.7
2,084,498	+		GFF2046	0.18	-0.1
2,084,510	+		GFF2046	0.19	+0.8
2,084,510	+		GFF2046	0.19	-0.2
2,084,515	+		GFF2046	0.19	-2.0
2,084,520	+		GFF2046	0.19	+0.4
2,084,528	-		GFF2046	0.20	+0.4
2,084,536	+		GFF2046	0.21	+1.3
2,084,536	+		GFF2046	0.21	+0.0
2,084,536	+		GFF2046	0.21	+0.4
2,084,544	-		GFF2046	0.22	-1.3
2,084,544	-		GFF2046	0.22	-2.5
2,084,550	+		GFF2046	0.22	-0.3
2,084,558	-		GFF2046	0.23	-0.5
2,084,558	-		GFF2046	0.23	-2.1
2,084,567	-		GFF2046	0.24	-0.3
2,084,590	-		GFF2046	0.26	-1.5
2,084,595	-		GFF2046	0.26	-1.9
2,084,595	-		GFF2046	0.26	+0.2
2,084,598	-		GFF2046	0.26	+0.1
2,084,598	-		GFF2046	0.26	-1.1
2,084,598	-		GFF2046	0.26	+1.2
2,084,598	-		GFF2046	0.26	-1.1
2,084,600	+		GFF2046	0.27	-2.3
2,084,625	+		GFF2046	0.29	-0.8
2,084,633	-		GFF2046	0.30	-2.2
2,084,652	+		GFF2046	0.31	+0.5
2,084,662	+		GFF2046	0.32	-1.6
2,084,662	+		GFF2046	0.32	-1.7
2,084,662	+		GFF2046	0.32	-0.7
2,084,662	+		GFF2046	0.32	-1.1
2,084,670	-		GFF2046	0.33	-0.1
2,084,672	+		GFF2046	0.33	+1.7
2,084,678	+		GFF2046	0.34	-0.3
2,084,681	-		GFF2046	0.34	-1.6
2,084,705	+		GFF2046	0.36	-0.1
2,084,713	-		GFF2046	0.37	-0.9
2,084,713	-		GFF2046	0.37	-1.7
2,084,745	+		GFF2046	0.39	-0.0
2,084,745	+		GFF2046	0.39	-2.3
2,084,752	+		GFF2046	0.40	+0.8
2,084,755	+		GFF2046	0.40	-0.1
2,084,797	+		GFF2046	0.44	-0.6
2,084,799	-		GFF2046	0.44	+1.8
2,084,802	+		GFF2046	0.45	-1.2
2,084,802	+		GFF2046	0.45	+0.5
2,084,802	+		GFF2046	0.45	+0.5
2,084,802	+		GFF2046	0.45	-1.3
2,084,802	+		GFF2046	0.45	-0.1
2,084,802	+		GFF2046	0.45	+0.1
2,084,810	-		GFF2046	0.45	+0.1
2,084,810	-		GFF2046	0.45	+0.5
2,084,810	-		GFF2046	0.45	-0.4
2,084,810	-		GFF2046	0.45	-0.4
2,084,810	-		GFF2046	0.45	+0.4
2,084,822	+		GFF2046	0.46	-0.5
2,084,830	-		GFF2046	0.47	-0.9
2,084,830	-		GFF2046	0.47	+0.3
2,084,866	+		GFF2046	0.50	-1.2
2,084,866	+		GFF2046	0.50	-0.7
2,084,871	+		GFF2046	0.51	-0.6
2,084,872	+		GFF2046	0.51	-0.4
2,084,872	+		GFF2046	0.51	-1.3
2,084,872	-		GFF2046	0.51	-0.1
2,084,874	-		GFF2046	0.51	+0.2
2,084,875	+		GFF2046	0.51	-0.4
2,084,885	+		GFF2046	0.52	-0.7
2,084,891	-		GFF2046	0.52	-0.4
2,084,912	+		GFF2046	0.54	-0.7
2,084,936	-		GFF2046	0.56	+1.2
2,084,936	-		GFF2046	0.56	-0.4
2,084,957	-		GFF2046	0.58	+0.5
2,084,959	+		GFF2046	0.58	-0.8
2,084,974	+		GFF2046	0.60	-0.3
2,084,974	+		GFF2046	0.60	-0.2
2,084,974	+		GFF2046	0.60	+0.7
2,084,974	+		GFF2046	0.60	-0.2
2,084,979	+		GFF2046	0.60	-1.8
2,084,982	-		GFF2046	0.61	+0.5
2,084,988	+		GFF2046	0.61	-0.8
2,084,988	+		GFF2046	0.61	-1.6
2,084,993	+		GFF2046	0.62	+0.8
2,084,996	-		GFF2046	0.62	-1.8
2,084,996	-		GFF2046	0.62	+1.0
2,085,029	-		GFF2046	0.65	+1.3
2,085,048	+		GFF2046	0.66	+0.7
2,085,051	-		GFF2046	0.67	+0.0
2,085,055	-		GFF2046	0.67	-1.7
2,085,060	-		GFF2046	0.67	+0.6
2,085,081	+		GFF2046	0.69	-0.3
2,085,081	+		GFF2046	0.69	-0.1
2,085,081	+		GFF2046	0.69	+0.0
2,085,088	+		GFF2046	0.70	-1.5
2,085,088	-		GFF2046	0.70	+0.8
2,085,088	-		GFF2046	0.70	+0.4
2,085,089	-		GFF2046	0.70	-0.4
2,085,108	-		GFF2046	0.72	+0.5
2,085,127	-		GFF2046	0.73	+0.9
2,085,129	+		GFF2046	0.74	-0.4
2,085,130	-		GFF2046	0.74	+0.2
2,085,133	+		GFF2046	0.74	-0.8
2,085,140	+		GFF2046	0.75	-0.0
2,085,140	+		GFF2046	0.75	-0.7
2,085,145	+		GFF2046	0.75	-1.2
2,085,145	+		GFF2046	0.75	-0.6
2,085,145	+		GFF2046	0.75	-0.7
2,085,145	+		GFF2046	0.75	+0.3
2,085,148	-		GFF2046	0.75	-0.8
2,085,148	-		GFF2046	0.75	-0.9
2,085,148	-		GFF2046	0.75	-0.9
2,085,148	-		GFF2046	0.75	-0.1
2,085,149	-		GFF2046	0.75	-0.1
2,085,149	-		GFF2046	0.75	-1.3
2,085,153	-		GFF2046	0.76	+0.1
2,085,153	-		GFF2046	0.76	-0.5
2,085,153	-		GFF2046	0.76	+0.1
2,085,153	-		GFF2046	0.76	-1.2
2,085,158	-		GFF2046	0.76	-1.2
2,085,174	-		GFF2046	0.78	-0.6
2,085,180	+		GFF2046	0.78	-1.2
2,085,182	-		GFF2046	0.78	+0.1
2,085,188	-		GFF2046	0.79	+1.4
2,085,188	-		GFF2046	0.79	-0.2
2,085,190	+		GFF2046	0.79	-0.2
2,085,224	+		GFF2046	0.82	-0.6
2,085,290	-		GFF2046	0.88	-1.0
2,085,314	+				-1.5
2,085,324	-				-3.4
2,085,360	-				-0.3
2,085,370	-				-1.5
2,085,370	-				-2.1
2,085,391	+				-0.4
2,085,399	-				+0.6
2,085,418	-				-0.7
2,085,418	-				-0.5
2,085,420	+				-2.2
2,085,420	+				-1.0
2,085,428	-				+0.5
2,085,886	-				-0.0
2,085,899	+				+0.1
2,085,899	+				+0.5
2,085,899	+				-1.5
2,085,904	+				-1.5
2,085,904	+				-1.7
2,085,904	+				-2.7
2,085,914	+				-0.4
2,085,914	+				-1.4
2,085,914	+				-0.5
2,085,914	+				-0.6
2,085,917	-				+1.1
2,085,917	-				-0.2
2,085,917	-				+0.2
2,085,917	-				-0.3
2,085,922	-				+0.6
2,085,922	-				-0.6
2,085,922	-				-0.2
2,085,922	-				-0.4
2,085,922	-				+0.6
2,085,922	-				-1.4
2,085,922	-				+0.0
2,085,922	-				+1.4
2,085,922	-				-0.0
2,085,922	-				-1.7
2,085,922	-				+1.3
2,085,922	-				+0.4
2,085,922	-				-1.1
2,085,926	+				+0.4
2,085,942	-				+1.0
2,085,986	+				+0.7
2,085,987	+				-0.8
2,085,995	-				-2.0
2,085,995	-				-0.2
2,085,995	-				-0.1
2,085,995	-				-0.4
2,086,055	+				-1.2
2,086,055	+				-0.4
2,086,063	-				+0.1
2,086,063	-				+0.3
2,086,065	+				-0.1
2,086,115	-				-0.2
2,086,120	+				+0.4
2,086,128	-				-0.4
2,086,128	-				+0.8
2,086,158	+				-1.6
2,086,163	+				-0.7
2,086,173	-				-0.4
2,086,176	-				+1.1
2,086,178	-				-0.9
2,086,178	-				-0.0
2,086,199	-				-0.9
2,086,213	+				-0.3
2,086,221	+				-0.6
2,086,221	+				-1.0
2,086,256	-				-0.6
2,086,286	+				-1.7
2,086,286	+				-1.5
2,086,294	-				+0.1
2,086,294	-				+0.3
2,086,294	-				-1.4
2,086,329	+				-1.4
2,086,365	+				+0.4
2,086,368	-				-0.7
2,086,371	-				-0.2
2,086,371	-				-0.3
2,086,371	-				-1.0
2,086,373	-				-0.0
2,086,378	+				-0.5
2,086,418	-		GFF2048	0.16	+1.3
2,086,435	-		GFF2048	0.21	+0.3
2,086,449	-		GFF2048	0.24	+0.1
2,086,468	-		GFF2048	0.29	-0.5
2,086,475	-		GFF2048	0.30	-0.4
2,086,531	+		GFF2048	0.44	+0.2
2,086,533	-		GFF2048	0.45	+0.1
2,086,533	-		GFF2048	0.45	-0.9
2,086,544	-		GFF2048	0.47	-0.0
2,086,547	+		GFF2048	0.48	+0.5
2,086,547	+		GFF2048	0.48	-0.9
2,086,569	+		GFF2048	0.53	+0.0
2,086,569	+		GFF2048	0.53	-0.1
2,086,575	+		GFF2048	0.55	-0.2
2,086,577	-		GFF2048	0.55	+0.6
2,086,632	+		GFF2048	0.69	-1.6
2,086,632	+		GFF2048	0.69	-1.2
2,086,635	-		GFF2048	0.70	-0.6
2,086,640	-		GFF2048	0.71	+1.3
2,086,640	-		GFF2048	0.71	-1.2
2,086,667	+		GFF2048	0.77	+0.2
2,086,692	+		GFF2048	0.84	-0.6
2,086,700	-		GFF2048	0.86	-0.8
2,086,707	+		GFF2048	0.87	-0.2
2,086,717	+		GFF2048	0.90	-0.5
2,086,719	-				+1.3
2,086,727	+				-1.9
2,086,735	-				+0.1
2,086,735	-				-0.5
2,086,735	-				+0.1
2,086,778	+				-0.3
2,086,804	-				+0.1
2,086,804	-				-1.3
2,086,804	-				-1.3
2,086,828	+				-0.2
2,086,828	+				-0.9
2,086,830	+				-1.2
2,086,836	-				+0.2
2,086,836	-				-0.1
2,086,836	-				+0.8
2,086,843	-				-0.7
2,086,868	-				-0.3
2,086,870	+				+0.1
2,086,870	+				-0.7
2,086,870	+				+0.1
2,086,873	-				+0.1
2,086,878	-				-1.4
2,086,883	-				-0.0
2,086,883	-				-0.0
2,086,883	-				+0.2
2,086,886	-				+0.6
2,086,898	+				+0.5
2,086,898	+				-0.2
2,086,900	-				-1.1
2,086,902	+				-1.8
2,086,905	-		GFF2049	0.10	-0.4
2,086,905	-		GFF2049	0.10	+0.8