Strain Fitness in Sphingobium sp. HT1-2 around GFF2000

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,018,918	+		GFF1999	0.16	+0.5
2,018,921	-		GFF1999	0.17	+0.3
2,018,921	-		GFF1999	0.17	+0.1
2,018,921	-		GFF1999	0.17	-0.2
2,018,926	-		GFF1999	0.17	-1.7
2,018,926	-		GFF1999	0.17	-0.0
2,018,926	-		GFF1999	0.17	-0.2
2,018,926	-		GFF1999	0.17	-1.6
2,018,969	+		GFF1999	0.21	-1.0
2,018,972	-		GFF1999	0.21	+1.0
2,018,972	-		GFF1999	0.21	+0.7
2,018,982	-		GFF1999	0.22	-0.0
2,018,982	-		GFF1999	0.22	+0.4
2,018,983	+		GFF1999	0.22	-0.8
2,019,002	-		GFF1999	0.23	-0.1
2,019,005	+		GFF1999	0.24	-3.1
2,019,013	-		GFF1999	0.24	+1.4
2,019,013	-		GFF1999	0.24	-0.1
2,019,018	-		GFF1999	0.25	-0.0
2,019,022	+		GFF1999	0.25	+0.6
2,019,049	+		GFF1999	0.27	-2.1
2,019,049	+		GFF1999	0.27	-0.8
2,019,057	-		GFF1999	0.28	+0.1
2,019,057	-		GFF1999	0.28	-1.3
2,019,057	-		GFF1999	0.28	-1.3
2,019,057	-		GFF1999	0.28	+0.4
2,019,057	-		GFF1999	0.28	+0.6
2,019,059	-		GFF1999	0.28	+0.3
2,019,071	-		GFF1999	0.29	-0.7
2,019,115	+		GFF1999	0.33	+0.0
2,019,130	-		GFF1999	0.34	-2.3
2,019,142	+		GFF1999	0.35	-1.1
2,019,142	+		GFF1999	0.35	-0.9
2,019,152	+		GFF1999	0.36	-0.1
2,019,152	+		GFF1999	0.36	-1.0
2,019,160	-		GFF1999	0.37	-1.3
2,019,160	-		GFF1999	0.37	-1.1
2,019,160	-		GFF1999	0.37	-0.1
2,019,160	-		GFF1999	0.37	-1.4
2,019,160	-		GFF1999	0.37	-1.7
2,019,160	-		GFF1999	0.37	+0.8
2,019,160	-		GFF1999	0.37	+0.3
2,019,160	-		GFF1999	0.37	-0.2
2,019,160	-		GFF1999	0.37	+0.2
2,019,160	-		GFF1999	0.37	-0.3
2,019,243	+		GFF1999	0.44	-1.8
2,019,253	+		GFF1999	0.45	+0.3
2,019,260	+		GFF1999	0.45	-0.4
2,019,276	+		GFF1999	0.47	-1.1
2,019,276	+		GFF1999	0.47	+0.3
2,019,284	-		GFF1999	0.47	-0.1
2,019,284	-		GFF1999	0.47	-1.5
2,019,284	-		GFF1999	0.47	-1.8
2,019,284	-		GFF1999	0.47	+0.3
2,019,291	+		GFF1999	0.48	+0.9
2,019,347	+		GFF1999	0.53	-0.4
2,019,355	+		GFF1999	0.53	+0.5
2,019,355	-		GFF1999	0.53	-1.8
2,019,386	-		GFF1999	0.56	+1.6
2,019,485	-		GFF1999	0.65	+0.3
2,019,485	-		GFF1999	0.65	+0.3
2,019,491	-		GFF1999	0.65	-0.3
2,019,527	-		GFF1999	0.68	-1.5
2,019,544	-		GFF1999	0.70	+0.6
2,019,569	-		GFF1999	0.72	-1.0
2,019,580	-		GFF1999	0.73	-0.3
2,019,600	+		GFF1999	0.74	+0.4
2,019,608	-		GFF1999	0.75	-0.3
2,019,608	-		GFF1999	0.75	-2.1
2,019,631	+		GFF1999	0.77	-1.5
2,019,631	+		GFF1999	0.77	-2.7
2,019,639	+		GFF1999	0.78	+0.6
2,019,639	-		GFF1999	0.78	-0.2
2,019,649	-		GFF1999	0.78	-1.4
2,019,657	-		GFF1999	0.79	-1.7
2,019,668	+		GFF1999	0.80	-0.9
2,019,669	+		GFF1999	0.80	+0.2
2,019,669	+		GFF1999	0.80	+0.2
2,019,669	+		GFF1999	0.80	+1.0
2,019,669	+		GFF1999	0.80	-0.4
2,019,677	-		GFF1999	0.81	-2.5
2,019,677	-		GFF1999	0.81	+0.6
2,019,702	+		GFF1999	0.83	-1.2
2,019,702	+		GFF1999	0.83	-0.2
2,019,702	+		GFF1999	0.83	-1.0
2,019,702	+		GFF1999	0.83	+0.4
2,019,702	+		GFF1999	0.83	+0.1
2,019,702	+		GFF1999	0.83	-1.3
2,019,710	-		GFF1999	0.84	+0.4
2,019,710	-		GFF1999	0.84	-0.4
2,019,710	-		GFF1999	0.84	+0.9
2,019,710	-		GFF1999	0.84	-1.2
2,019,710	-		GFF1999	0.84	-0.7
2,019,710	-		GFF1999	0.84	-0.2
2,019,746	+		GFF1999	0.87	+0.3
2,019,746	+		GFF1999	0.87	-0.5
2,019,772	+		GFF1999	0.89	+0.6
2,019,772	+		GFF1999	0.89	-0.9
2,019,772	+		GFF1999	0.89	+0.2
2,019,772	+		GFF1999	0.89	-0.4
2,019,772	+		GFF1999	0.89	-0.0
2,019,772	+		GFF1999	0.89	-0.1
2,019,777	+		GFF1999	0.89	-1.1
2,019,780	-		GFF1999	0.90	+0.7
2,019,780	-		GFF1999	0.90	-0.8
2,019,785	-				-0.4
2,019,790	+				-1.7
2,019,798	-				-2.1
2,019,805	+				-0.6
2,019,851	-				-2.3
2,019,902	-				-1.8
2,019,912	+				-1.1
2,019,918	-				+1.1
2,019,920	-				-0.3
2,019,929	+				+0.7
2,020,485	+		GFF2000	0.39	-1.8
2,020,877	-		GFF2000	0.66	-1.4
2,021,405	-				+0.1
2,021,409	-				-1.8
2,021,464	+				-0.2
2,021,472	-				-2.3
2,021,473	-				-1.3
2,021,504	+				-0.8
2,021,504	+				-0.7
2,021,512	-				+0.4
2,021,546	+				+0.9
2,021,551	+				+0.5
2,021,551	+				+0.6
2,021,551	+				-1.9
2,021,551	+				-1.1
2,021,551	+				-0.3
2,021,556	+				-0.2
2,021,556	+				-0.0
2,021,556	+				-0.2
2,021,556	+				-0.9
2,021,556	+				+1.1
2,021,556	+				+0.1
2,021,559	-				-1.6
2,021,559	-				-1.6
2,021,564	-				-1.3
2,021,564	-				-1.5
2,021,564	-				-0.6
2,021,564	-				+0.3
2,021,564	-				-1.3
2,021,564	-				+0.4
2,021,566	+				-0.1
2,021,574	-				-0.5
2,021,595	+				-0.3
2,021,617	+				+0.4
2,021,617	+				-0.4
2,021,625	-				-0.1
2,021,667	-				-1.0
2,021,667	-				-0.7
2,021,687	-				-0.7
2,021,692	-				-0.6
2,021,693	-				-0.9
2,021,697	-		GFF2001	0.10	+0.3
2,021,766	+		GFF2001	0.14	+0.3
2,021,766	+		GFF2001	0.14	-2.6
2,021,766	+		GFF2001	0.14	-1.9
2,021,766	-		GFF2001	0.14	-0.1
2,021,774	-		GFF2001	0.15	-0.1
2,021,778	+		GFF2001	0.15	-0.7
2,021,778	+		GFF2001	0.15	-2.7
2,021,778	+		GFF2001	0.15	-1.7
2,021,778	+		GFF2001	0.15	-2.2
2,021,783	+		GFF2001	0.15	-1.4
2,021,784	-		GFF2001	0.15	-0.7
2,021,786	-		GFF2001	0.15	+1.9
2,021,786	-		GFF2001	0.15	-2.2
2,021,788	+		GFF2001	0.16	+0.1
2,021,788	+		GFF2001	0.16	-0.1
2,021,788	+		GFF2001	0.16	-0.9
2,021,788	+		GFF2001	0.16	-0.6
2,021,788	+		GFF2001	0.16	-2.1
2,021,791	-		GFF2001	0.16	-1.9
2,021,791	-		GFF2001	0.16	-1.5
2,021,796	-		GFF2001	0.16	-0.3
2,021,796	-		GFF2001	0.16	-0.9
2,021,796	-		GFF2001	0.16	-0.6
2,021,796	-		GFF2001	0.16	-1.0
2,021,801	-		GFF2001	0.16	-1.4
2,021,810	-		GFF2001	0.17	-0.2
2,021,824	+		GFF2001	0.18	+0.4
2,021,832	-		GFF2001	0.18	-1.9
2,021,839	-		GFF2001	0.19	-1.6
2,021,864	-		GFF2001	0.20	+1.0
2,021,872	-		GFF2001	0.21	-1.9
2,021,888	+		GFF2001	0.22	+0.2
2,021,912	+		GFF2001	0.23	-2.1
2,021,914	+		GFF2001	0.23	-2.5
2,021,942	+		GFF2001	0.25	+0.1
2,021,949	+		GFF2001	0.25	-1.4
2,021,950	-		GFF2001	0.25	-1.0
2,021,950	-		GFF2001	0.25	-0.1
2,021,950	-		GFF2001	0.25	-1.2
2,021,959	+		GFF2001	0.26	-0.4
2,021,967	+		GFF2001	0.26	+0.0
2,021,967	+		GFF2001	0.26	+0.3
2,021,967	+		GFF2001	0.26	+1.1
2,021,967	+		GFF2001	0.26	-0.9
2,021,967	+		GFF2001	0.26	+1.5
2,021,967	+		GFF2001	0.26	-0.1
2,021,967	+		GFF2001	0.26	-0.2
2,021,975	-		GFF2001	0.27	-0.2
2,021,975	-		GFF2001	0.27	+0.8
2,021,975	-		GFF2001	0.27	-0.2
2,021,975	-		GFF2001	0.27	+0.1
2,021,975	-		GFF2001	0.27	-0.5
2,021,975	-		GFF2001	0.27	-0.3
2,021,975	-		GFF2001	0.27	-2.7
2,021,975	-		GFF2001	0.27	-0.0
2,021,975	-		GFF2001	0.27	-1.9
2,021,975	-		GFF2001	0.27	-1.3
2,021,980	-		GFF2001	0.27	+0.4
2,021,982	+		GFF2001	0.27	-0.5
2,021,995	+		GFF2001	0.28	-0.9
2,022,010	-		GFF2001	0.29	+1.4
2,022,089	-		GFF2001	0.34	-3.1
2,022,091	+		GFF2001	0.34	-1.1
2,022,099	-		GFF2001	0.34	-0.6
2,022,099	-		GFF2001	0.34	+1.1
2,022,105	-		GFF2001	0.35	+1.0
2,022,126	+		GFF2001	0.36	+0.2
2,022,131	+		GFF2001	0.36	-0.3
2,022,131	+		GFF2001	0.36	-1.1
2,022,131	+		GFF2001	0.36	-2.5
2,022,134	-		GFF2001	0.37	-0.5
2,022,139	-		GFF2001	0.37	-1.3
2,022,139	-		GFF2001	0.37	-0.5
2,022,141	+		GFF2001	0.37	-1.0
2,022,166	-		GFF2001	0.39	+0.4
2,022,188	+		GFF2001	0.40	-0.6
2,022,214	+		GFF2001	0.41	+0.7
2,022,220	+		GFF2001	0.42	+1.8
2,022,254	-		GFF2001	0.44	-0.0
2,022,293	-		GFF2001	0.46	+0.3
2,022,297	-		GFF2001	0.47	+1.7
2,022,304	+		GFF2001	0.47	+1.0
2,022,311	+		GFF2001	0.47	-0.1
2,022,319	-		GFF2001	0.48	-0.2
2,022,345	-		GFF2001	0.49	-1.3
2,022,369	+		GFF2001	0.51	-0.6