Strain Fitness in Sphingobium sp. HT1-2 around GFF1987

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,007,584	-		GFF1984	0.45	-0.3
2,007,588	+		GFF1984	0.45	-0.3
2,007,625	+		GFF1984	0.54	-0.8
2,007,625	+		GFF1984	0.54	+1.1
2,007,643	+		GFF1984	0.58	+1.5
2,007,643	+		GFF1984	0.58	+0.5
2,007,643	+		GFF1984	0.58	+1.0
2,007,643	+		GFF1984	0.58	-1.1
2,007,643	+		GFF1984	0.58	-0.2
2,007,643	+		GFF1984	0.58	+0.2
2,007,643	+		GFF1984	0.58	-0.5
2,007,648	+		GFF1984	0.59	-0.3
2,007,651	-		GFF1984	0.60	-0.1
2,007,651	-		GFF1984	0.60	-0.2
2,007,651	-		GFF1984	0.60	+0.0
2,007,651	-		GFF1984	0.60	-2.1
2,007,651	-		GFF1984	0.60	+0.2
2,007,651	-		GFF1984	0.60	-0.5
2,007,661	-		GFF1984	0.62	+0.3
2,007,661	-		GFF1984	0.62	-1.0
2,007,681	+		GFF1984	0.67	-1.7
2,007,719	+		GFF1984	0.76	+0.3
2,007,727	+		GFF1984	0.78	+0.2
2,007,727	+		GFF1984	0.78	+0.3
2,007,735	-		GFF1984	0.80	+0.6
2,007,735	-		GFF1984	0.80	-0.5
2,007,735	-		GFF1984	0.80	-0.4
2,007,735	-		GFF1984	0.80	-1.7
2,007,742	-		GFF1984	0.81	+1.7
2,007,765	+		GFF1984	0.87	+1.1
2,007,765	+		GFF1984	0.87	-1.4
2,007,765	+		GFF1984	0.87	-0.5
2,007,765	+		GFF1984	0.87	+0.2
2,007,765	+		GFF1984	0.87	-0.1
2,007,765	+		GFF1984	0.87	-1.5
2,007,770	+		GFF1984	0.88	-0.3
2,007,770	+		GFF1984	0.88	+0.8
2,007,773	-		GFF1984	0.89	+0.9
2,007,773	-		GFF1984	0.89	-0.5
2,007,795	+				-2.0
2,007,795	+				-0.3
2,007,795	+				-0.6
2,007,795	+				-0.4
2,007,795	+				+1.3
2,007,795	+				+0.3
2,007,795	+				-1.4
2,007,795	+				-0.8
2,007,795	+				+0.3
2,007,795	+				+0.7
2,007,795	+				+0.2
2,007,795	+				+0.0
2,007,795	+				+0.3
2,007,795	+				-0.1
2,007,795	+				-0.9
2,007,800	+				+1.7
2,007,800	+				+0.8
2,007,803	-				-0.1
2,007,803	-				+0.4
2,007,803	-				+0.9
2,007,803	-				+0.6
2,007,803	-				+0.8
2,007,803	-				+0.3
2,007,803	-				+1.1
2,007,803	-				+0.6
2,007,803	-				-2.0
2,007,803	-				+0.6
2,007,803	-				+0.3
2,007,803	-				-1.1
2,007,803	-				+0.3
2,007,803	-				+2.2
2,007,803	-				+0.8
2,007,810	+				-0.4
2,007,818	-				+0.6
2,007,818	-				+0.6
2,007,823	-				-2.3
2,007,831	-				-0.5
2,007,878	+				+0.8
2,007,883	+				+0.0
2,007,891	-				-0.2
2,007,891	-				+0.2
2,007,901	-				+1.0
2,007,911	-				+1.4
2,007,913	+				-1.3
2,007,922	+				-0.5
2,007,930	-		GFF1985	0.12	-0.1
2,007,953	+		GFF1985	0.19	-2.0
2,007,954	-		GFF1985	0.19	+0.5
2,007,956	-		GFF1985	0.19	+2.1
2,007,964	-		GFF1985	0.22	-1.9
2,007,973	+		GFF1985	0.24	-0.3
2,007,975	+		GFF1985	0.25	-0.9
2,007,975	+		GFF1985	0.25	+1.0
2,007,975	+		GFF1985	0.25	+0.5
2,007,975	+		GFF1985	0.25	+0.4
2,007,975	-		GFF1985	0.25	-0.6
2,007,981	-		GFF1985	0.27	+0.2
2,007,983	-		GFF1985	0.27	-1.8
2,007,983	-		GFF1985	0.27	-0.5
2,007,983	-		GFF1985	0.27	-0.2
2,008,020	+		GFF1985	0.38	-0.3
2,008,020	+		GFF1985	0.38	-2.2
2,008,028	-		GFF1985	0.41	-0.4
2,008,033	-		GFF1985	0.42	-0.3
2,008,033	-		GFF1985	0.42	+0.9
2,008,048	+		GFF1985	0.47	+0.0
2,008,058	+		GFF1985	0.50	-0.5
2,008,066	-		GFF1985	0.52	-0.6
2,008,094	+		GFF1985	0.60	-0.9
2,008,137	-		GFF1985	0.73	-2.0
2,008,158	+		GFF1985	0.79	+0.4
2,008,163	+		GFF1985	0.81	-2.8
2,008,166	-		GFF1985	0.81	-2.1
2,008,168	+		GFF1985	0.82	-1.0
2,008,170	+		GFF1985	0.83	-2.0
2,008,178	-		GFF1985	0.85	+0.6
2,008,180	+		GFF1985	0.86	-1.7
2,008,194	+		GFF1985	0.90	-0.1
2,008,195	+				+0.4
2,008,207	-				+0.5
2,008,219	-				+0.2
2,008,429	+				-0.6
2,008,436	+				+1.7
2,008,449	+				+0.0
2,008,462	-				-1.3
2,008,464	+				-0.3
2,008,469	+				+0.6
2,008,469	+				-0.4
2,008,471	+				-0.1
2,008,471	+				+0.6
2,008,471	+				+0.5
2,008,471	+				-0.4
2,008,471	+				-0.1
2,008,471	+				+1.4
2,008,477	-				+0.6
2,008,496	+				+0.3
2,009,625	-				-1.6
2,009,644	+				+0.2
2,009,686	-				-1.6
2,009,700	+				+0.5
2,009,700	+				+0.2
2,009,700	+				+0.0
2,009,700	+				-0.2
2,009,700	+				-0.6
2,009,700	+				-1.5
2,009,700	+				-2.0
2,009,708	-				-1.3
2,009,708	-				-0.6
2,009,708	-				-0.2
2,009,708	-				-0.6
2,009,708	-				-1.8
2,009,713	-				-0.7
2,009,727	-				-1.1
2,009,729	+				-0.1
2,009,737	-				-0.9
2,009,741	+				-1.8
2,009,763	+				+0.7
2,009,763	+				-1.6
2,009,771	-				+0.5
2,009,824	-				-0.4
2,009,839	+				+0.7
2,009,839	+				-1.3
2,009,839	+				-0.3
2,009,839	+				+1.0
2,009,840	+				-0.4
2,009,847	-		GFF1988	0.10	+0.1
2,009,852	-		GFF1988	0.11	+2.0
2,009,857	-		GFF1988	0.11	-0.8
2,009,858	+		GFF1988	0.11	+1.3
2,009,866	-		GFF1988	0.12	+0.2
2,009,916	-		GFF1988	0.16	-0.9
2,009,936	+		GFF1988	0.18	+0.7
2,009,944	-		GFF1988	0.19	-1.1
2,009,958	+		GFF1988	0.20	-2.6
2,009,969	+		GFF1988	0.21	+0.3
2,009,977	-		GFF1988	0.22	+0.0
2,009,979	-		GFF1988	0.22	-1.5
2,009,988	+		GFF1988	0.23	+0.2
2,009,988	+		GFF1988	0.23	-0.8
2,009,990	+		GFF1988	0.23	+0.2
2,009,990	+		GFF1988	0.23	-1.7
2,009,996	-		GFF1988	0.24	+0.2
2,009,998	-		GFF1988	0.24	+0.1
2,009,998	-		GFF1988	0.24	+0.5
2,010,008	+		GFF1988	0.25	+1.1
2,010,009	+		GFF1988	0.25	-0.5
2,010,014	+		GFF1988	0.25	-1.8
2,010,014	+		GFF1988	0.25	-0.0
2,010,014	+		GFF1988	0.25	-1.6
2,010,014	+		GFF1988	0.25	+0.1
2,010,014	+		GFF1988	0.25	+0.0
2,010,014	+		GFF1988	0.25	-1.2
2,010,014	+		GFF1988	0.25	+0.6
2,010,017	-		GFF1988	0.25	-0.6
2,010,022	-		GFF1988	0.26	-1.4
2,010,022	-		GFF1988	0.26	-0.1
2,010,022	-		GFF1988	0.26	+0.8
2,010,022	-		GFF1988	0.26	-0.5
2,010,022	-		GFF1988	0.26	-0.4
2,010,022	-		GFF1988	0.26	+1.6
2,010,022	-		GFF1988	0.26	-0.4
2,010,022	-		GFF1988	0.26	-0.9
2,010,043	-		GFF1988	0.28	+0.4
2,010,046	+		GFF1988	0.28	-1.9
2,010,084	-		GFF1988	0.31	-0.5
2,010,102	+		GFF1988	0.33	-0.1
2,010,102	+		GFF1988	0.33	+1.2
2,010,102	+		GFF1988	0.33	-0.5
2,010,102	+		GFF1988	0.33	-1.6
2,010,102	+		GFF1988	0.33	+0.7
2,010,102	+		GFF1988	0.33	-1.1
2,010,102	+		GFF1988	0.33	+0.2
2,010,110	-		GFF1988	0.34	+1.0
2,010,110	-		GFF1988	0.34	-1.5
2,010,110	-		GFF1988	0.34	+0.2
2,010,110	-		GFF1988	0.34	-1.7
2,010,110	-		GFF1988	0.34	-1.3
2,010,110	-		GFF1988	0.34	+0.2
2,010,158	+		GFF1988	0.38	+0.6
2,010,163	+		GFF1988	0.38	-1.5
2,010,166	-		GFF1988	0.39	-0.1
2,010,166	-		GFF1988	0.39	+0.1
2,010,166	-		GFF1988	0.39	+0.0
2,010,194	+		GFF1988	0.41	-1.5
2,010,195	+		GFF1988	0.41	+0.1
2,010,203	-		GFF1988	0.42	-0.9
2,010,210	+		GFF1988	0.43	-1.3
2,010,211	-		GFF1988	0.43	-1.1
2,010,241	+		GFF1988	0.45	+1.2
2,010,294	+		GFF1988	0.50	-0.9
2,010,317	-		GFF1988	0.52	-0.2
2,010,322	-		GFF1988	0.53	-1.8
2,010,359	+		GFF1988	0.56	-2.5
2,010,380	+		GFF1988	0.58	-1.0
2,010,380	+		GFF1988	0.58	-1.1
2,010,380	+		GFF1988	0.58	-1.8
2,010,380	+		GFF1988	0.58	+0.6
2,010,380	+		GFF1988	0.58	-1.8
2,010,380	+		GFF1988	0.58	-1.1
2,010,380	+		GFF1988	0.58	-0.9
2,010,388	-		GFF1988	0.58	+0.2
2,010,388	-		GFF1988	0.58	+0.3
2,010,388	-		GFF1988	0.58	-1.1
2,010,388	-		GFF1988	0.58	+0.8
2,010,388	-		GFF1988	0.58	+0.9
2,010,388	-		GFF1988	0.58	-0.7
2,010,388	-		GFF1988	0.58	+0.9
2,010,407	+		GFF1988	0.60	+1.2
2,010,415	-		GFF1988	0.61	-0.6
2,010,466	+		GFF1988	0.65	-0.5
2,010,533	-		GFF1988	0.71	-0.7
2,010,552	+		GFF1988	0.73	-0.7
2,010,552	+		GFF1988	0.73	-0.1
2,010,560	-		GFF1988	0.74	-0.8
2,010,563	+		GFF1988	0.74	-1.9
2,010,563	+		GFF1988	0.74	+0.3
2,010,568	+		GFF1988	0.74	+0.2
2,010,571	-		GFF1988	0.75	+0.8
2,010,571	-		GFF1988	0.75	-0.3
2,010,571	-		GFF1988	0.75	+0.0
2,010,576	-		GFF1988	0.75	+1.0
2,010,576	-		GFF1988	0.75	-1.5
2,010,580	+		GFF1988	0.75	+0.9
2,010,588	-		GFF1988	0.76	+0.1
2,010,609	+		GFF1988	0.78	-1.0
2,010,617	-		GFF1988	0.79	+0.4
2,010,617	-		GFF1988	0.79	-0.7
2,010,629	+		GFF1988	0.80	-1.3
2,010,633	-		GFF1988	0.80	-1.1
2,010,634	-		GFF1988	0.80	-2.3
2,010,646	+		GFF1988	0.81	-0.6