Strain Fitness in Sphingobium sp. HT1-2 around GFF1952

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1951 and GFF1952 overlap by 4 nucleotidesGFF1952 and GFF1953 overlap by 1 nucleotides GFF1951 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (EC 6.3.2.10), at 1,976,935 to 1,978,326 GFF1951 GFF1952 - UDP-N-acetylmuramoyl-dipeptide--2,6- diaminopimelate ligase (EC 6.3.2.13), at 1,978,323 to 1,979,765 GFF1952 GFF1953 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 1,979,765 to 1,981,468 GFF1953 Position (kb) 1978 1979 1980Strain fitness (log2 ratio) -1 0 1at 1979.780 kb on - strandat 1979.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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1,979,780 - +0.7
1,979,784 - +1.7

Or see this region's nucleotide sequence