Strain Fitness in Sphingobium sp. HT1-2 around GFF1951

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1950 and GFF1951 overlap by 1 nucleotidesGFF1951 and GFF1952 overlap by 4 nucleotides GFF1950 - Phospho-N-acetylmuramoyl-pentapeptide- transferase (EC 2.7.8.13), at 1,975,862 to 1,976,935 GFF1950 GFF1951 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (EC 6.3.2.10), at 1,976,935 to 1,978,326 GFF1951 GFF1952 - UDP-N-acetylmuramoyl-dipeptide--2,6- diaminopimelate ligase (EC 6.3.2.13), at 1,978,323 to 1,979,765 GFF1952 Position (kb) 1976 1977 1978 1979Strain fitness (log2 ratio) -1 0 1at 1976.946 kb on - strandat 1976.946 kb on - strandat 1976.946 kb on - strandat 1976.946 kb on - strandat 1976.946 kb on - strandat 1976.946 kb on - strandat 1976.946 kb on - strandat 1976.946 kb on - strandat 1976.968 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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1,976,946 - +0.9
1,976,946 - +0.2
1,976,946 - +0.5
1,976,946 - -0.3
1,976,946 - -1.1
1,976,946 - +1.3
1,976,946 - +0.1
1,976,946 - +1.0
1,976,968 - -1.3

Or see this region's nucleotide sequence