Strain Fitness in Sphingobium sp. HT1-2 around GFF1904

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,925,874	+				-0.7
1,925,926	+		GFF1902	0.17	-2.9
1,925,940	+		GFF1902	0.20	+0.0
1,925,944	+		GFF1902	0.21	+0.3
1,925,964	+		GFF1902	0.26	-0.0
1,925,972	-		GFF1902	0.28	-2.0
1,925,972	-		GFF1902	0.28	-1.9
1,925,982	+		GFF1902	0.31	+0.1
1,926,002	+		GFF1902	0.36	-0.7
1,926,053	-		GFF1902	0.48	+0.3
1,926,095	-		GFF1902	0.58	-1.7
1,926,130	+		GFF1902	0.67	-0.5
1,926,179	-		GFF1902	0.79	-0.5
1,926,226	+				+0.0
1,926,246	+				-0.7
1,926,254	-				+0.5
1,926,254	-				+1.2
1,926,260	+				-0.3
1,926,263	+				+1.7
1,926,270	+				+0.3
1,926,271	-				+2.0
1,926,273	+				+0.3
1,926,843	-				-1.2
1,926,845	+				+0.4
1,926,845	+				-0.3
1,926,853	-				+0.1
1,926,863	+				+1.3
1,926,869	+				-1.6
1,926,881	+				+0.5
1,926,886	+				-1.5
1,927,522	+				+0.8
1,927,536	+				-1.1
1,927,543	-				-0.7
1,927,560	+				-0.8
1,927,568	-				-1.7
1,927,569	-				-0.2
1,927,599	-				-0.1
1,927,617	+				+0.2
1,927,617	-				-0.9
1,927,645	+				-1.0
1,927,653	-				-1.2
1,927,669	+				+0.4
1,927,672	-				-0.1
1,927,677	-				-1.1
1,927,680	-				-0.6
1,927,685	-				+0.1
1,927,689	+				+0.0
1,927,701	+				-1.1
1,927,701	+				-0.4
1,927,703	+				+1.2
1,927,704	-				-0.6
1,927,704	-				-0.3
1,927,704	-				-0.0
1,927,719	-				+1.6
1,927,729	+		GFF1905	0.10	-1.9
1,927,733	+		GFF1905	0.11	-2.3
1,927,800	-		GFF1905	0.17	+0.1
1,927,805	+		GFF1905	0.17	-1.4
1,927,805	-		GFF1905	0.17	+0.5
1,927,810	+		GFF1905	0.18	+0.8
1,927,840	+		GFF1905	0.21	-0.9
1,927,845	+		GFF1905	0.21	+0.9
1,927,863	+		GFF1905	0.23	+0.2
1,927,864	+		GFF1905	0.23	-0.4
1,927,864	+		GFF1905	0.23	+0.5
1,927,864	+		GFF1905	0.23	-0.0
1,927,869	+		GFF1905	0.24	-1.2
1,927,874	+		GFF1905	0.24	-0.3
1,927,874	+		GFF1905	0.24	+0.9
1,927,874	+		GFF1905	0.24	+0.7
1,927,874	+		GFF1905	0.24	-1.6
1,927,874	+		GFF1905	0.24	+0.6
1,927,874	+		GFF1905	0.24	-0.4
1,927,881	+		GFF1905	0.25	+0.7
1,927,882	-		GFF1905	0.25	-0.8
1,927,882	-		GFF1905	0.25	-0.4
1,927,882	-		GFF1905	0.25	-0.2
1,927,882	-		GFF1905	0.25	+0.2
1,927,889	-		GFF1905	0.26	-1.9
1,927,915	+		GFF1905	0.28	-1.2
1,927,918	-		GFF1905	0.28	-0.6
1,927,918	-		GFF1905	0.28	-1.5
1,927,923	-		GFF1905	0.29	-2.1
1,927,935	+		GFF1905	0.30	-0.7
1,927,952	+		GFF1905	0.32	-0.2
1,927,958	+		GFF1905	0.32	-1.1
1,927,958	+		GFF1905	0.32	-1.4
1,927,972	+		GFF1905	0.34	+1.2
1,927,980	-		GFF1905	0.34	+0.2
1,927,985	-		GFF1905	0.35	-2.0
1,927,985	-		GFF1905	0.35	-0.8
1,927,985	-		GFF1905	0.35	-1.3
1,927,989	+		GFF1905	0.35	+0.2
1,928,009	+		GFF1905	0.37	-0.5
1,928,017	-		GFF1905	0.38	+0.7
1,928,024	+		GFF1905	0.39	+0.8
1,928,032	-		GFF1905	0.39	-0.5
1,928,032	-		GFF1905	0.39	+0.5
1,928,082	+		GFF1905	0.44	-0.4
1,928,082	+		GFF1905	0.44	+0.6
1,928,089	+		GFF1905	0.45	-2.2
1,928,090	-		GFF1905	0.45	-0.2
1,928,110	+		GFF1905	0.47	-0.7
1,928,110	+		GFF1905	0.47	-1.5
1,928,110	+		GFF1905	0.47	+0.3
1,928,110	+		GFF1905	0.47	+0.3
1,928,110	+		GFF1905	0.47	-1.5
1,928,118	-		GFF1905	0.48	-0.4
1,928,118	-		GFF1905	0.48	+0.6
1,928,118	-		GFF1905	0.48	+0.4
1,928,118	-		GFF1905	0.48	-1.0
1,928,124	+		GFF1905	0.48	-0.5
1,928,139	+		GFF1905	0.50	-0.2
1,928,144	+		GFF1905	0.50	+0.6
1,928,144	+		GFF1905	0.50	-1.0
1,928,144	+		GFF1905	0.50	-1.3
1,928,147	-		GFF1905	0.51	-1.4
1,928,152	-		GFF1905	0.51	-0.1
1,928,152	-		GFF1905	0.51	+1.2
1,928,152	-		GFF1905	0.51	+0.5
1,928,152	-		GFF1905	0.51	-2.0
1,928,152	-		GFF1905	0.51	-0.6
1,928,152	-		GFF1905	0.51	-2.1
1,928,168	+		GFF1905	0.53	-1.1
1,928,173	-		GFF1905	0.53	+0.7
1,928,175	+		GFF1905	0.53	-1.1
1,928,202	-		GFF1905	0.56	-0.7
1,928,202	-		GFF1905	0.56	+0.2
1,928,202	-		GFF1905	0.56	+0.3
1,928,206	+		GFF1905	0.56	-0.4
1,928,214	-		GFF1905	0.57	+0.9
1,928,231	+		GFF1905	0.59	+0.5
1,928,240	+		GFF1905	0.60	+0.0
1,928,248	-		GFF1905	0.60	-0.7
1,928,248	-		GFF1905	0.60	-1.1
1,928,254	+		GFF1905	0.61	-0.3
1,928,281	-		GFF1905	0.63	+0.4
1,928,282	+		GFF1905	0.64	+0.2
1,928,282	+		GFF1905	0.64	+1.0
1,928,282	+		GFF1905	0.64	+1.3
1,928,282	+		GFF1905	0.64	-1.0
1,928,287	+		GFF1905	0.64	+0.8
1,928,287	+		GFF1905	0.64	+0.2
1,928,290	-		GFF1905	0.64	+0.8
1,928,290	-		GFF1905	0.64	+0.1
1,928,292	+		GFF1905	0.65	-0.9
1,928,295	-		GFF1905	0.65	-1.2
1,928,303	+		GFF1905	0.66	-0.1
1,928,309	-		GFF1905	0.66	+0.0
1,928,318	+		GFF1905	0.67	-1.1
1,928,318	+		GFF1905	0.67	-0.9
1,928,318	+		GFF1905	0.67	+0.0
1,928,318	+		GFF1905	0.67	-0.5
1,928,318	+		GFF1905	0.67	+1.3
1,928,320	+		GFF1905	0.67	+0.2
1,928,325	+		GFF1905	0.68	-1.1
1,928,325	+		GFF1905	0.68	+0.2
1,928,325	+		GFF1905	0.68	-0.8
1,928,325	+		GFF1905	0.68	-0.2
1,928,325	+		GFF1905	0.68	+1.1
1,928,325	+		GFF1905	0.68	-0.3
1,928,325	+		GFF1905	0.68	-0.3
1,928,325	+		GFF1905	0.68	+0.9
1,928,325	+		GFF1905	0.68	-0.1
1,928,325	+		GFF1905	0.68	+0.8
1,928,326	-		GFF1905	0.68	-0.8
1,928,326	-		GFF1905	0.68	+0.5
1,928,326	-		GFF1905	0.68	+0.7
1,928,333	-		GFF1905	0.69	-0.5
1,928,333	-		GFF1905	0.69	-0.8
1,928,333	-		GFF1905	0.69	+0.3
1,928,333	-		GFF1905	0.69	-0.5
1,928,333	-		GFF1905	0.69	-1.1
1,928,333	-		GFF1905	0.69	+0.3
1,928,333	-		GFF1905	0.69	-0.9
1,928,333	-		GFF1905	0.69	-2.7
1,928,333	-		GFF1905	0.69	+1.1
1,928,333	-		GFF1905	0.69	+0.8
1,928,333	-		GFF1905	0.69	-0.9
1,928,385	+		GFF1905	0.74	-2.1
1,928,435	+		GFF1905	0.78	-2.1
1,928,437	-		GFF1905	0.79	+0.2
1,928,446	+		GFF1905	0.79	-0.3
1,928,454	-		GFF1905	0.80	-1.2
1,928,463	+		GFF1905	0.81	-1.0
1,928,475	+		GFF1905	0.82	-0.8
1,928,513	+		GFF1905	0.86	-1.5